Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0096 ATGCCCAAGTTAATGGGTTCTCAGATACCAAAATCTGTAAGGTTTGGACATCCAACTGCTGGAGGTTACCGATACAGAAGCAGACTGTCTCCAGGGTCAATATTGGAAAGCATAGAGAGAAAATTTTCAAGTGTTTCTAATAGCTTTAGAAGAATAATAACACACTTAGGCTTCAAGCATCCAGGTGATCAGTCAGTAAAGAAACCAAAATTTTGGAAGAAAATTCTTGATCCACATAAGCCATTTCTTCAGCAATGGAACAAGATATTTGTGCTCTCATCTGTCATAGCAGTAGCTGTGGATCCTCTCTTCTTTTACGTCCCAGTGATCGATGCACAACGTCAATGCCTAACCATGGACCGACAACTTATGATCATTGCTTGTGTTCTTCGTTCATTCATCGATTTATTTTATCTACTTCACATGATCTTTGAATTTCGAACTGGTTTTCTTCCCCCTTCTTTACCGGTTTTTGGAAGTGGTGAATTAATCAAAGATCCAGCCAAAATAGCAAAGAAATATCTCTTCTCAAACTTCTTGATCGATATCTTATCCATTCTCCCACTACCTCAGCTTTTGGTATTAGCAATCGTACCTGCAGCAAAAGGCTCAACTGCCTTGAAGACAAAGAACGTCGTGAAGACTGCAGTTCTTTTGCAATATGTTCCAAGACTTCTCCGAATTTATCCACTATACAGAGAAGTAACCAGAACTTCTGGCATACTGACAGAAACAGCCTGGAGTGGAGCTGCCTTCAATCTCCTCATTTATATGCAAGCTAGTCATGTAGTTGGTGCCATTTGGTATTTGTTATCAATAGAACGACAAGCCAAATGCTGGCTCCAAGCATGCAGCAAAGATGAATGTATTGACAATTTTCTGCACTGTGGAGATCGTAAAAAACAAATCTCCCAGTCTATAAATGAGTTTTGCTCTCCTAAAGAGTCTGAAGATGGAAAGAGCTTCGAGTTTGGGATGTATGTTGAAGCCCTCAAGTTTAACTTAACTGAGACGACGAGTTTTCGCCGCAAATTCTGCTATTCCTTTTGGTGGGCTCTGCGAAATGTCGGCTCTAGCGGACAAAACCTTGATGTAGGCAATTACATAGGGGAGGTTTTTTTTGCTGTCTTCATTGCCATCCTTGGTTTGGTTTTATTCGCGTTACTCATTAGCAATATTCAGAAATATCTGCAGTCAACAACTGTTAAAATAGAGCAGATGAGAATTAACCGAAGAGACGCTGAGCATTGGATGGCACATCGTATGCTCCCAGAGGGGTTGAGACAGCGTATTCGACGATATGATCAGTACAAATGGCAGCTAAACAGGGGAGTTAAGGAAGAGGAACTCATCAGTAACCTTCCTAAAGACCTCAGAAGAGACATCAAACGCCACCTTTGCTTGGCCCATCTTAAGAAAGTGCCACTTTTTAACAGCATGGATAAACAACTGTTGGACGCAATGTGCGAATATCTCAAGCCTGTGTTATTCACAGAGAAGAGCTTCATTCTGCAAGAGGGTGACCCAATTGATATGATGCTATTTATTATGAAAGGAAAGCTGGCTACCATTATTACTTGTGATTGGAAAAACGACCCGTACTTGGCCACGCTTAATGCTGGTGACTTCTGTGGTGAAGAGCTAGTTCAATGGGCAATGGATCCCACCTCCACCAGTTCTCTTCCTATTTCACAAAGAACAGTTAAAACTCTAACTGAGGTTGAAGCCTTTTCTCTGAAGGCTAATGAGCTGAAATCTGTAACTAGTCAGTTCCACTTTCAGCGCCTTAATAACAAGCAATTCCAACTCTCAGTGAGGTTCTACTCTCATCAATGGAAAGTTTGGGCAGCCTACAAAATACAAGAAGCTTGGCATGATTACTGCGAAAGAAGGCGGAGAGGGGGTGGAGATGGCAGGTTTCAAGATGCATTAGCTAAAACACTTGGCGCCTCGGCGAGCTTTAGTGCCACTCTGTATGCATCCATATTCATATCCCATCTACTGCAAGCTGTGCAGCGAGATCAACACCAGCAAACTGCCCAAGTCACACGAGTGATGACACTACCGCCGCCTCCGAAGCCAGACGATGAGCAAGACAAGCCAAATTTCACCATCTTGGATCTTTAA 2127 42.36 MPKLMGSQIPKSVRFGHPTAGGYRYRSRLSPGSILESIERKFSSVSNSFRRIITHLGFKHPGDQSVKKPKFWKKILDPHKPFLQQWNKIFVLSSVIAVAVDPLFFYVPVIDAQRQCLTMDRQLMIIACVLRSFIDLFYLLHMIFEFRTGFLPPSLPVFGSGELIKDPAKIAKKYLFSNFLIDILSILPLPQLLVLAIVPAAKGSTALKTKNVVKTAVLLQYVPRLLRIYPLYREVTRTSGILTETAWSGAAFNLLIYMQASHVVGAIWYLLSIERQAKCWLQACSKDECIDNFLHCGDRKKQISQSINEFCSPKESEDGKSFEFGMYVEALKFNLTETTSFRRKFCYSFWWALRNVGSSGQNLDVGNYIGEVFFAVFIAILGLVLFALLISNIQKYLQSTTVKIEQMRINRRDAEHWMAHRMLPEGLRQRIRRYDQYKWQLNRGVKEEELISNLPKDLRRDIKRHLCLAHLKKVPLFNSMDKQLLDAMCEYLKPVLFTEKSFILQEGDPIDMMLFIMKGKLATIITCDWKNDPYLATLNAGDFCGEELVQWAMDPTSTSSLPISQRTVKTLTEVEAFSLKANELKSVTSQFHFQRLNNKQFQLSVRFYSHQWKVWAAYKIQEAWHDYCERRRRGGGDGRFQDALAKTLGASASFSATLYASIFISHLLQAVQRDQHQQTAQVTRVMTLPPPPKPDDEQDKPNFTILDL 708
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1060650 1064160 - ClG42_05g0009600.10 Clacu05g0096 247843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0096 708 SMART cnmp_10 476 606 IPR000595 -
Clacu05g0096 708 Gene3D - 89 400 - -
Clacu05g0096 708 Pfam Ion transport protein 92 401 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu05g0096 708 Gene3D Helix hairpin bin 402 467 - -
Clacu05g0096 708 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 65 670 - -
Clacu05g0096 708 Gene3D Jelly Rolls 474 592 IPR014710 -
Clacu05g0096 708 ProSiteProfiles cAMP/cGMP binding motif profile. 476 559 IPR000595 -
Clacu05g0096 708 CDD CAP_ED 476 608 IPR000595 -
Clacu05g0096 708 FunFam Cyclic nucleotide-gated ion channel 1 403 467 - -
Clacu05g0096 708 SUPERFAMILY Voltage-gated potassium channels 77 398 - -
Clacu05g0096 708 SUPERFAMILY cAMP-binding domain-like 406 592 IPR018490 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0096 Clacu-Chr5:1060650 Clacu10g1459 Clacu-Chr10:27746792 2.80E-162 dispersed
Clacu05g0096 Clacu-Chr5:1060650 Clacu05g0098 Clacu-Chr5:1068041 1.20E-120 proximal
Clacu05g0096 Clacu-Chr5:1060650 Clacu05g0097 Clacu-Chr5:1066980 3.70E-82 tandem
Clacu01g0052 Clacu-Chr1:477478 Clacu05g0096 Clacu-Chr5:1060650 2.10E-189 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0096 K05391 - csv:101206492 1152.89