Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0098 ATGCTATGCTTTCTGGATGAGGCTTCAATATCTGTATCCACCTGGTTTCTTTGTCATTTATGGAGCTACTACCCAAAAAAGAAACGGCAACGAAAGAAATGGCCAATATTGGAGAGAATGGAGAGAAGATTTTCTATTGTCTGGAAGAAAACTCTTGATCCACAGGCCCCATTCCTTCAGCAATGCAACAAAATATTTGTGGTGTCCTGTGTCATAGCAGTAGCTGCGGACCCTCTCTTCTTTTACATCCCGGTGTTTAATAGACAACATCAATGCCTAACCACGGACCGACCCCTTATGATCATTGCTTCCCTTGTCCGTTCCTTCGTTGACATATTTTATCTACTTCACATCATCTTTGAATTTCGAACAGGTTTTCTGCCTTCTTATGTACAAGCACCAGGAAGTGCTGAATTAATTCGAGATGTAGCAGATATAACAAAGAGATACCTCTCTTCAAATTTCACCATTGATATCTTGTCCATTTTCCCACTGCCTCAGCTTTTGGTACTAGTTATCATACCTGCATTGAAAGGCTCGATTCCATTGAAGACAAAGAAGTTTGTAAAGATTGCAGTTCTTCTGCAATACATGCCAAGGCTTCTCCGAATTTATCCACTATACAAAGAAGTAGTTAGAACTTCTGGCATACTAACAGAAAGAGCATGGAGTGGAGCTGCCTTTAATCTCCTTATTTATATGCAAGCTAATCATGTAGTTGGCGCCTTTTGGTATTTATTTTCCATAGAACAACAAGCAAGATACTGGCTCGAGGCATGTAAGATAAATAACTGTACCAGCATTTTTCTGTATTGTGGAGATCCCAACGGACAGGCTTACCCGTTTATAGATGCATATTGCTCTCATAAAGAGTCTGAAGGTGACAATGCCTTTGACTTTGGGACATATGTTGAAGCCTTTAAGTTCCATTTAACCGTCGCCGCAAATCCATTCATTCTTTCTGGTGGGCTCTGCGAAGTGTCAGGTTCCTCTAGTGGACAAAACCTCGAAGTAAGCGATTACATAGGGGAGGTTCTTTTTGCTATGTTTATCGCCATCCTCGGTTTGGTTTTATTTGCATTACTCGTTAGCAACATTCAGAAATATCTGCAGTCAAGTAATGCTAGAGTAGAACAGATGAGAATTAACTGA 1152 40.45 MLCFLDEASISVSTWFLCHLWSYYPKKKRQRKKWPILERMERRFSIVWKKTLDPQAPFLQQCNKIFVVSCVIAVAADPLFFYIPVFNRQHQCLTTDRPLMIIASLVRSFVDIFYLLHIIFEFRTGFLPSYVQAPGSAELIRDVADITKRYLSSNFTIDILSIFPLPQLLVLVIIPALKGSIPLKTKKFVKIAVLLQYMPRLLRIYPLYKEVVRTSGILTERAWSGAAFNLLIYMQANHVVGAFWYLFSIEQQARYWLEACKINNCTSIFLYCGDPNGQAYPFIDAYCSHKESEGDNAFDFGTYVEAFKFHLTVAANPFILSGGLCEVSGSSSGQNLEVSDYIGEVLFAMFIAILGLVLFALLVSNIQKYLQSSNARVEQMRIN 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1068041 1070680 - ClG42_05g0009800.10 Clacu05g0098 247845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0098 383 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 38 382 - -
Clacu05g0098 383 Pfam Ion transport protein 66 376 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu05g0098 383 SUPERFAMILY Voltage-gated potassium channels 54 371 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0098 Clacu-Chr5:1068041 Clacu10g1459 Clacu-Chr10:27746792 9.10E-67 dispersed
Clacu05g0096 Clacu-Chr5:1060650 Clacu05g0098 Clacu-Chr5:1068041 1.20E-120 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0098 K05391 - csv:101206492 421.394