Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0125 ATGGGAACTAGTGAAGAGGCGAAGTCTGTGAAGACTGAAAAACCATCCTCACCAACACCGGATCAGAATAGTGTGCCAAATTCAGCCAGTATTCATGTTTTTCCTGATTGGGCAGCCATGCAGGCATATTATGGTCCTAGAGTTGCAGTTCCACCATACTACAACTCTGCTGTAGCTTCAGGTCATGCTCCTCACCCTTATATGTGGGCTCCACCACAGATGATTCCTCCATATGGTACTCCTTATGCTGCAATCTATTCTCATGGAGGTGTTTATGCCCATCCTGCAGTTTCTATGGGACCACATTCACATGGCCCTGGTGTTCCCTCATCACCTGGGGCTGCACCTCCTTTGAGTATTGAAACACCTTCAAAGGTATCTGGAAATAGCAGTCAAGGTTTAATGAAGAAACTGAAAGGTTTCGATGGCCTGGCAATGTCCATAGGCAATGTTAGCACTGAGACTGCTGAAGGGGGAGCTGAGCATGGACAATCAGAGAGTATGGAAACTGAAGGTTCCAGTGATGGAAGTGATGGAACTACTGCTGGGGCAAATCAAACCAAAAGGAAACGAAGCCGGGAGGGAACACCTACCACTGGTAAGGATGCAAAAATTGAGCCACAGGCAAGTCCAGTTACTGCTGCTGAAATGAATGAAAGCTCTAGCAAATTATTGGGCACGACCAAAGCAGCTAATGCGACTGGAAAACTTGGATCTGTGATTTCTCCTGGAATGTCTACTGCATTGGAACTGAGAAATCCTTCCAGTATAAATGCCATGACAAGTCCAACGACGGTTCCACCTTGTTCAGTACTGCCTTCTGAAGTCTGGCTCCAGAATGAAAAGGAGCTAAAACGGGAAAGGAGAAAACAGTCGAATAGAGAATCCGCTAGGAGGTCAAGGTTGAGGAAGCAGGCTGAGACAGAGGAACTAGCTCGTAAAGTTGATTCGCTGACTGCCGAGAATGTTGCTATTCGATCTGAAATAAGTAGATTGTCAGAGAACTCCGAGAAACTTAAGAAAGAAAACTCTACCTTGATGGAAAAGCTTAAAAGCGCTCAATCAGGACGAACAGAAGCATTAGACATGAATGAAAAGAGGATGCAACAACCTGTAAGCACAGAAACCAAAGGACCTGTGAATAAAAGCATTAACGAAGAGAGTATCATCTGCAAGAAAAACTCGAGTTCGGGTGCAAAACTGCGGCAGCTCTTGGATACGAGTCCGAGGGCGGATGCAGTCGCTGCTAGCTAA 1254 45.93 MGTSEEAKSVKTEKPSSPTPDQNSVPNSASIHVFPDWAAMQAYYGPRVAVPPYYNSAVASGHAPHPYMWAPPQMIPPYGTPYAAIYSHGGVYAHPAVSMGPHSHGPGVPSSPGAAPPLSIETPSKVSGNSSQGLMKKLKGFDGLAMSIGNVSTETAEGGAEHGQSESMETEGSSDGSDGTTAGANQTKRKRSREGTPTTGKDAKIEPQASPVTAAEMNESSSKLLGTTKAANATGKLGSVISPGMSTALELRNPSSINAMTSPTTVPPCSVLPSEVWLQNEKELKRERRKQSNRESARRSRLRKQAETEELARKVDSLTAENVAIRSEISRLSENSEKLKKENSTLMEKLKSAQSGRTEALDMNEKRMQQPVSTETKGPVNKSINEESIICKKNSSSGAKLRQLLDTSPRADAVAAS 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1267517 1270772 + ClG42_05g0012500.10 Clacu05g0125 247872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0125 417 SUPERFAMILY Leucine zipper domain 284 340 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g0125 417 MobiDBLite consensus disorder prediction 213 242 - -
Clacu05g0125 417 MobiDBLite consensus disorder prediction 279 312 - -
Clacu05g0125 417 Coils Coil 301 356 - -
Clacu05g0125 417 MobiDBLite consensus disorder prediction 1 29 - -
Clacu05g0125 417 CDD bZIP_plant_GBF1 286 334 IPR045314 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g0125 417 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 288 303 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g0125 417 Pfam Disordered region downstream of MFMR 132 263 - -
Clacu05g0125 417 Pfam G-box binding protein MFMR 1 97 IPR012900 -
Clacu05g0125 417 MobiDBLite consensus disorder prediction 332 381 - -
Clacu05g0125 417 MobiDBLite consensus disorder prediction 153 186 - -
Clacu05g0125 417 MobiDBLite consensus disorder prediction 101 134 - -
Clacu05g0125 417 MobiDBLite consensus disorder prediction 367 381 - -
Clacu05g0125 417 MobiDBLite consensus disorder prediction 13 29 - -
Clacu05g0125 417 Pfam bZIP transcription factor 281 343 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g0125 417 FunFam G-box binding factor 3 284 339 - -
Clacu05g0125 417 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 283 346 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g0125 417 SMART brlzneu 281 345 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g0125 417 Gene3D - 284 337 - -
Clacu05g0125 417 PANTHER G-BOX-BINDING FACTOR 3-RELATED 14 375 IPR044827 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)|GO:0043565(PANTHER)|GO:0043565(InterPro)
Clacu05g0125 417 MobiDBLite consensus disorder prediction 153 242 - -
Clacu05g0125 417 MobiDBLite consensus disorder prediction 395 417 - -
Clacu05g0125 417 MobiDBLite consensus disorder prediction 332 347 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0125 Clacu-Chr5:1267517 Clacu10g0129 Clacu-Chr10:1536087 4.00E-23 dispersed
Clacu05g0125 Clacu-Chr5:1267517 Clacu09g1161 Clacu-Chr9:11144387 3.50E-27 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47583 PF16596 MFMR_assoc 8.40E-22 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0125 K09060 - csv:101213720 733.406