Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0146 ATGGAGGAATATGGCAAACTACAATACCCACCTCCGCCGCCGTCGCCGCCTCCGCCATGTTCAGATCCTGATGCAACCCCTCTGGAAATCGACTGGATCGCAGTTCTCTCTGACCAAGAAGTCACTGGAGACTTAGCGGCGGCAGCAGCAACTTGCGAGTCATCGGAAACGAGAAGGGACGAAGAGAAGGGGGAGCGGAGGAAGAAAGGCGGTCGCCGGTGGAGAAGGACCGCCGGCTGCCGGAGGTTTGAGTTTCAGACGAGGAGTGCTGAAGATATTCTTGATGATGGATATCGGTGGCGCAAGTACGGACAAAAAGCTGTCAAACACAGCCTCCATCCGAGGAGCTACTATAGGTGTACATACCTCACATGCAATGTGAAGAAACAAGTTCAAAGGCTATCAAAAGACACAAGTATTGTTGTGACTACTTATGAGGGAACTCACAACCATCCTTCTCACTTCCTCATGCAAACCCTAACTCCTCTTCTCAAACAAATTCAAACTACTTTTCCACTTTCTAAATTTTTTATGTATTAG 540 48.89 MEEYGKLQYPPPPPSPPPPCSDPDATPLEIDWIAVLSDQEVTGDLAAAAATCESSETRRDEEKGERRKKGGRRWRRTAGCRRFEFQTRSAEDILDDGYRWRKYGQKAVKHSLHPRSYYRCTYLTCNVKKQVQRLSKDTSIVVTTYEGTHNHPSHFLMQTLTPLLKQIQTTFPLSKFFMY 179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1390016 1390884 - ClG42_05g0014600.10 Clacu05g0146 247893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0146 179 MobiDBLite consensus disorder prediction 1 26 - -
Clacu05g0146 179 FunFam WRKY transcription factor 57 80 154 - -
Clacu05g0146 179 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 57 152 IPR044810 GO:0003700(InterPro)
Clacu05g0146 179 SMART WRKY_cls 94 153 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu05g0146 179 ProSiteProfiles WRKY domain profile. 89 154 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu05g0146 179 MobiDBLite consensus disorder prediction 46 73 - -
Clacu05g0146 179 Gene3D WRKY domain 78 153 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu05g0146 179 MobiDBLite consensus disorder prediction 7 24 - -
Clacu05g0146 179 SUPERFAMILY WRKY DNA-binding domain 87 152 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu05g0146 179 MobiDBLite consensus disorder prediction 54 68 - -
Clacu05g0146 179 Pfam WRKY DNA -binding domain 95 152 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0146 Clacu-Chr5:1390016 Clacu07g1556 Clacu-Chr7:30210380 1.50E-27 dispersed
Clacu05g0146 Clacu-Chr5:1390016 Clacu07g0779 Clacu-Chr7:19700126 9.30E-38 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47585 PF03106 WRKY 4.30E-25 CL0274 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0146 - - - 0.0