Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0150 ATGGAAGTCGATTGGGATCTTCACGCCGTCGTCAGAGGCTACTCCGCCGTGCCCTCCGCCGCCACCATTATTCCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCAATAACTCTATTCCTTTTTCTTTTACCAGAGACCTAACCAACCAAACAAAAAGTCATTTCTTCTCCCTTCAAGATCCATTTCAACCCCCCAATTGCAACTCCACTGAAGAATTGCATGAGCTTTTCAAACCCTTTTTCCCCAAATCACAACCCTCTCCTCCGCCGCCGCCTCCACCGCCTGCTCCGCCGCTTCTTTCTTCTCCGGCTGCTAAAATTCTGACCCATCACAAGCAACATCAGAGCACCCATCTCCCCAAACAGCTCCATTCAACCCCTGTTTCTGCTCCGAGATCCAAACGCCGGAAGAATCAGTTGAAGAAAGTTTGTCAAGTTCCCGCGGAGAGTCTGTCTTCGGATATTTGGGCTTGGCGAAAATATGGACAAAAACCCATTAAAGGATCTCCATATCCAAGGGGATATTACAGATGTAGCAGTTCGAAGGGTTGCATGGCCCGAAAACAAGTCGAGAGGAACAGATCCGACCCGGGAATGTTCATAGTCACGTACACGGCGGAGCACAACCACCCGGCGCCGACTCACCGGAACTCCCTCGCCGGGTCCACCCGTCAGAAACCCATAACAACGACGCCCACCGCTTCCGGATCTGAAAAACCCGACCCGAAACAGCCGGTTTGCTCGTCGGAAGAACAGAGTACGATCACAGAGAGCAAAGAAGAGAAGGAGGAATTATTAATGGCCGAAGATGAAGAAGACGACGATCTGGGGGTCTCCGATTTGATCGTCAACGACGATTTCTATGTGGGTTTTGAAGAGCTCGACAGCCCAATCACCGATGACTGCTTTTCCGATGAGTTTCCGACGAGTTTCGACCTTCCATGGTTGTTTAATGGAAACCCAGACAGCGAAATTGTAAAACTCCCCTGTTAA 996 50.0 MEVDWDLHAVVRGYSAVPSAATIIPSSSSSSSSSSSNNSIPFSFTRDLTNQTKSHFFSLQDPFQPPNCNSTEELHELFKPFFPKSQPSPPPPPPPPAPPLLSSPAAKILTHHKQHQSTHLPKQLHSTPVSAPRSKRRKNQLKKVCQVPAESLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCMARKQVERNRSDPGMFIVTYTAEHNHPAPTHRNSLAGSTRQKPITTTPTASGSEKPDPKQPVCSSEEQSTITESKEEKEELLMAEDEEDDDLGVSDLIVNDDFYVGFEELDSPITDDCFSDEFPTSFDLPWLFNGNPDSEIVKLPC 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1412043 1413217 - ClG42_05g0015000.10 Clacu05g0150 247897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0150 331 ProSiteProfiles WRKY domain profile. 148 214 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu05g0150 331 MobiDBLite consensus disorder prediction 208 277 - -
Clacu05g0150 331 MobiDBLite consensus disorder prediction 23 44 - -
Clacu05g0150 331 MobiDBLite consensus disorder prediction 80 146 - -
Clacu05g0150 331 Pfam WRKY DNA -binding domain 155 212 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu05g0150 331 Gene3D WRKY domain 137 207 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu05g0150 331 SMART WRKY_cls 153 213 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu05g0150 331 SUPERFAMILY WRKY DNA-binding domain 151 214 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu05g0150 331 MobiDBLite consensus disorder prediction 83 102 - -
Clacu05g0150 331 MobiDBLite consensus disorder prediction 211 239 - -
Clacu05g0150 331 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 5 265 IPR044810 GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Clacu05g0150 331 FunFam WRKY transcription factor 22 137 207 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0150 Clacu-Chr5:1412043 Clacu06g1480 Clacu-Chr6:25749442 1.20E-27 dispersed
Clacu01g2621 Clacu-Chr1:36359525 Clacu05g0150 Clacu-Chr5:1412043 1.30E-38 transposed
Clacu03g0847 Clacu-Chr3:9981300 Clacu05g0150 Clacu-Chr5:1412043 9.50E-38 transposed
Clacu01g0088 Clacu-Chr1:792167 Clacu05g0150 Clacu-Chr5:1412043 9.20E-39 wgd
Clacu05g0150 Clacu-Chr5:1412043 Clacu07g0780 Clacu-Chr7:19791952 8.50E-37 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47586 PF03106 WRKY 4.40E-25 CL0274 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0150 K13425 - csv:101217082 507.294