Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0159 ATGCTTGTCAAACCTAGAAATGAACCACTTTTAAAAATTGAAATTATTCCCCGGAATCCTCCATTGCTGGGGTTTTCCGATGAGGTCAATGCCCTTAAAACCTCTGATTTGCTTTCCTTAGTTCCTCCTCTTTCCCTCTCTGAATCGATCGAAGAAGAAGAAATGTCAGTTTACGACGCTGCATTTGTGAACACGGAGCTCTCTAAACCCACCTCGATTTTCGGCCTTCGTCTCTGGGTTGTTATCGGAATCTTTGTCGGAGCTCTAATAGTTCTCGCACTGTTTCTTCTTTCACTCTGCCTGACTTCTCGCAAGCGGAACCGCCATAAGAACCAAATCCGTTTTCCTAAGTCCACAACCCACCATTCTCCTCCTGCTGTTTCCAAAGAGATCCAGGAGATCGTCCACCACGCCGTGCCGGATCATCATCACCATGTTCAGCCGGAAATTCATGTCGAGATCGGGAAATTGGAGCATCGGGTTGTTTTCTCTGATAGACCTTCTAGTGGTGAGAGTAGAGGCACTGTGAGTGAAACTGCTTCTTTTGGATCTGGTACTGTTGGGCCTGAGGTTTCACACCTCGGTTGGGGCAGATGGTATACTCTCAGAGAGCTCGAGGCGGCCACTAATGGCTTGTGTGAAGAGAATGTGATTGGAGAAGGTGGATATGGGATCGTATATTTAGGCATTTTAGGAGATGGTACCAGAATTGCTATCAAGAATCTCTTGAATAACAGGGGTCAAGCTGAGAGGGAATTCAAAGTGGAAGTAGAAGCAATTGGACGCGTAAGACACAAGAATCTTGTCAGGTTGCTGGGATATTGCGTTGAGGGTGCATATAGAATGCTTGTTTATGAGTACGTTAACAATGGCAATTTAGACCAATGGCTTCATGGCGATGTTGGGGATGTGAGCCCTTTGACGTGGGAGATTCGTGTTAACATCATACTTGGCACAGCAAAGGGATTAGCCTATCTTCATGAGGGTCTTGAACCAAAGGTTGTTCATCGTGATGTAAAATCAAGCAACATACTGCTTGATCGTCAGTGGAATGCTAAAGTATCTGATTTTGGGCTGGCCAAGCTTCTTTGTTCTGAAAGAAGCTATGTGACAACTCGTGTAATGGGCACATTTGGCTATGTTGCACCTGAGTACGCCTGCACTGGAATGTTGAATGAAAAGAGTGATGTTTATAGCTTTGGAATTCTGATTATGGAGATAATTTCCGGGCGGAGCCCTGTTGATTACAGTAGACCTCAAGGAGAGGTAAATTTGGTGGATTGGTTGAAAGCAATGGTTGGTGACAGAAAATCTGAGGAAGTGGTCGACCCCAAGTTGCCGGAGAAGCCTCCTTCCAAAGCTCTCAAACGTGTTTTGCTGGTTGCTCTTCGTTGTGTCGATCCTGATGCTACAAAGAGGCCGAAAATGGGACACGTCATTCACATGCTCGAGGCAGATAATTTGCTGTCTCATGATGAACACCGGGTTGGTAAGGACTCTTCTCATTCAATTCAAGGCCATCAACATGAGAACCGGGCCGTTCCAAGACGAGTTAACAATCAGAAAGATGAACAGGCATCTTCTAATGTATGTGAAGGTGACAGTGATGGAAACATTCACCAACCAACAAGTTTGGTAGAGACATCTCCAACTGTAACCTCTACTTCATGTGCTCTTTTGCTCTGTTCTGACTGGACCAGATCAGATCAATCCTTTGGTTTATCTGCAACCATACATTGTCTTTTCGAGGACTCTCTGTCAAACTCAAAGCCTTTGGGAGTTTCTTCAAAACCCCCTTATCCAAAGCTTGCTTTTAGAAGTTGGGGCCAAGTGTTATGCATCAAAGGTGAAGTTGAAACAAGCACAAAGCACTTGGTAGCTGTAGTTTATACTTGGAAGGTTATCACCGGCTTTATCATCATCAATTCACAAATACAGCTCCTCTCATTGCCACCACGCGAAAATTCAACGTTTTCTGGCTGCGATACTTTCTTAGAAATTTCCTTTGCTTTCTTGTTCCTGAATCTGGCCTCTTGGCTGTTTACTGATGTTAGTAGTTGGTGTATCCAGTTCCTTCACCAGTGTTTCACGTCTGCTCTAGATTGGCAAACCTGA 2115 44.73 MLVKPRNEPLLKIEIIPRNPPLLGFSDEVNALKTSDLLSLVPPLSLSESIEEEEMSVYDAAFVNTELSKPTSIFGLRLWVVIGIFVGALIVLALFLLSLCLTSRKRNRHKNQIRFPKSTTHHSPPAVSKEIQEIVHHAVPDHHHHVQPEIHVEIGKLEHRVVFSDRPSSGESRGTVSETASFGSGTVGPEVSHLGWGRWYTLRELEAATNGLCEENVIGEGGYGIVYLGILGDGTRIAIKNLLNNRGQAEREFKVEVEAIGRVRHKNLVRLLGYCVEGAYRMLVYEYVNNGNLDQWLHGDVGDVSPLTWEIRVNIILGTAKGLAYLHEGLEPKVVHRDVKSSNILLDRQWNAKVSDFGLAKLLCSERSYVTTRVMGTFGYVAPEYACTGMLNEKSDVYSFGILIMEIISGRSPVDYSRPQGEVNLVDWLKAMVGDRKSEEVVDPKLPEKPPSKALKRVLLVALRCVDPDATKRPKMGHVIHMLEADNLLSHDEHRVGKDSSHSIQGHQHENRAVPRRVNNQKDEQASSNVCEGDSDGNIHQPTSLVETSPTVTSTSCALLLCSDWTRSDQSFGLSATIHCLFEDSLSNSKPLGVSSKPPYPKLAFRSWGQVLCIKGEVETSTKHLVAVVYTWKVITGFIIINSQIQLLSLPPRENSTFSGCDTFLEISFAFLFLNLASWLFTDVSSWCIQFLHQCFTSALDWQT 704
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1509447 1516302 + ClG42_05g0015900.10 Clacu05g0159 247906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0159 704 PANTHER OS01G0323000 PROTEIN 61 525 IPR052232 -
Clacu05g0159 704 MobiDBLite consensus disorder prediction 520 538 - -
Clacu05g0159 704 ProSiteProfiles Protein kinase domain profile. 212 489 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g0159 704 ProSitePatterns Protein kinases ATP-binding region signature. 218 240 IPR017441 GO:0005524(InterPro)
Clacu05g0159 704 MobiDBLite consensus disorder prediction 168 184 - -
Clacu05g0159 704 SUPERFAMILY Protein kinase-like (PK-like) 191 484 IPR011009 -
Clacu05g0159 704 Gene3D Transferase(Phosphotransferase) domain 1 288 500 - -
Clacu05g0159 704 Gene3D Phosphorylase Kinase; domain 1 194 287 - -
Clacu05g0159 704 SMART serkin_6 212 483 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g0159 704 FunFam Probable serine/threonine-protein kinase At1g01540 192 287 - -
Clacu05g0159 704 MobiDBLite consensus disorder prediction 494 538 - -
Clacu05g0159 704 Pfam Protein tyrosine and serine/threonine kinase 215 482 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu05g0159 704 MobiDBLite consensus disorder prediction 165 184 - -
Clacu05g0159 704 ProSitePatterns Serine/Threonine protein kinases active-site signature. 334 346 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu05g0159 704 CDD STKc_IRAK 218 484 - -
Clacu05g0159 704 MobiDBLite consensus disorder prediction 494 519 - -
Clacu05g0159 704 FunFam Putative receptor-like serine/threonine-protein kinase 288 498 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1762 Clacu-Chr1:29774906 Clacu05g0159 Clacu-Chr5:1509447 1.20E-167 dispersed
Clacu02g0544 Clacu-Chr2:5163204 Clacu05g0159 Clacu-Chr5:1509447 2.40E-141 dispersed
Clacu05g0159 Clacu-Chr5:1509447 Clacu08g1765 Clacu-Chr8:27093024 1.80E-169 dispersed
Clacu05g0159 Clacu-Chr5:1509447 Clacu05g0987 Clacu-Chr5:8770474 2.70E-72 wgd
Clacu05g0159 Clacu-Chr5:1509447 Clacu07g0800 Clacu-Chr7:20323646 1.70E-28 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73531 PF07714 PK_Tyr_Ser-Thr 3.10E-45 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0159 - - - 0.0