Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0164 ATGTGGGCCGAGCACTTACTTGGTGGGCCGGCCCAACACGAACCCGTTACACACCGACCCATTACCATCTGGAGTTATGGCTCATCCACCGCTGGATGGATCATCTCGCGGCAATGGAATGAACGCAGGAACTCGTCTGAGGAGCTTTTAGGAGCTACATTTTCACTTCAATCGGATTCGTCCATAACAGATTTAGTATCTCAATTGATAAATCTTGTTCCTGTCTGGTTCTTACGGAGTTTACTGGACGTGAGCCGGATTTGCTCCAATGGCTTGCATAAGCCTTACACAAAGATTTCCGAATACGTTGACCGGGTTCTTAGAACGAGTGTTATTCTAAATAAAAGATACTATAAAGATGAATCTCACAGTTTGAAGAGCGCCTCTGCATGGCGTTTACATATCCCTAGTTATGGTACACGTCGCATTGGTACATTTGTGCCCGCATCGTCGTTGAAATACTGGAACACTATCCCTCTTACTTCTCTTGGAAATCTATCAAATTCTCGATTTTATTCATCGGCTTCGGGTAGGAAAGTTGATATAACTGGAGATACTGGTGTTCCAGCAGCTTCTGCGGGTGTTGAACCGGATATCAGTAACCCCCCTGATCTTGGAAAGGACTTGCTTGAAAGGGTTAAGGATGTCTGGCAGAGTGCCGTAGATGCAACATCTTATACCGGGCAGAAGGCTAAAGAAGTATCGGATGAATTATCTCCGCATGTAGATAAACTCTTCAATTCACATCCATATCTAAAAAATGTGATTGTTCCTGTAAGTATGACCTTGACTGCTACTCTTTTGGCTTGGGTGGTAATGCCCAGGCTTTTGAGGAGATTTCATAAGTATTCAATGCGAAGTCCTGTTGCCATACTATCTGGAAGCATACCCAGTGAGGAAATTCCATATGAGAAAAGTTTTTGGGGTGCACTTGAGGATCCTTTGCGATATCTTGTTACCTTCTTTGCTTTTTCTCAAATTGGCATGATGGTTGCACCAACTGCAGTAGCACCAGAGTTTGTTTCACAGGCATGCAGGGGGGGTGTAATCCTTTCCCTTGTCTGGTTTATTTATCGCTGGAAAACAAATGTGTTATCTCGAGCCTTGGCCACCCAGACTTTTGCAGGGCTTGATCGGGACAGGTTACTTACCATTGATAAAGTTTCATCTGTTGCTTTATTTGCTATTGGATTAATGGCTTTGGCCGAGGCATCTGGTGTGGCCGTTCAATCTATGTTGACAGTTGGTGGTATTGGAGGAGTGGCCACTGCTTTTGCTGCGAGGGACATTCTTGGTAATATTTTGAGTGGCTTAACAATGCAGTTTTCACAACCCTTCTCACTTGGAGATACAATTAAGGCTGGTGCTATTGAAGGTCAAGTTGTGGAAATGGGACTCATGACAACATCACTTTTAAGTGCTGAAAAATTTCCAATCGTTGTTCCAAATTCTCTGTTTTCTAGCCAGGTCATTATAAATAAGTCGCGGGCACAGTGGCGAGCAATCACAAAGAAAATTCCTTTGCATGTTGATGATTTCAGTACAGTTTCTCAGATATCAGATGGTATTAAGAATATGCTTATGTCTCACCCTAAGGTGTTCTTGGGCAAAGAGGCTCCTTATTGTTTTCTCTCTCAAATTGAAAGTACATATGCAGAATTGACATTCGGTTGTAACCTTAAGAAAATGGGTAAAGAAGAATTGTTCTCTACAGAGCAAGATATCCTCCTTCAGTCAGTACAGATCATTAAGGAGAATGGTGCAAGCTTAGGTAGCACCATGTCAGATTGGACGAACAATTCTGCAGCAATTCTCAATGTGATTGGGAGAGCCATGAAGAAAGCAACTCATCCATAA 1857 42.92 MWAEHLLGGPAQHEPVTHRPITIWSYGSSTAGWIISRQWNERRNSSEELLGATFSLQSDSSITDLVSQLINLVPVWFLRSLLDVSRICSNGLHKPYTKISEYVDRVLRTSVILNKRYYKDESHSLKSASAWRLHIPSYGTRRIGTFVPASSLKYWNTIPLTSLGNLSNSRFYSSASGRKVDITGDTGVPAASAGVEPDISNPPDLGKDLLERVKDVWQSAVDATSYTGQKAKEVSDELSPHVDKLFNSHPYLKNVIVPVSMTLTATLLAWVVMPRLLRRFHKYSMRSPVAILSGSIPSEEIPYEKSFWGALEDPLRYLVTFFAFSQIGMMVAPTAVAPEFVSQACRGGVILSLVWFIYRWKTNVLSRALATQTFAGLDRDRLLTIDKVSSVALFAIGLMALAEASGVAVQSMLTVGGIGGVATAFAARDILGNILSGLTMQFSQPFSLGDTIKAGAIEGQVVEMGLMTTSLLSAEKFPIVVPNSLFSSQVIINKSRAQWRAITKKIPLHVDDFSTVSQISDGIKNMLMSHPKVFLGKEAPYCFLSQIESTYAELTFGCNLKKMGKEELFSTEQDILLQSVQIIKENGASLGSTMSDWTNNSAAILNVIGRAMKKATHP 618
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1533546 1537914 - ClG42_05g0016400.10 Clacu05g0164 247911

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0164 618 Gene3D - 343 443 - -
Clacu05g0164 618 Gene3D - 445 493 IPR023408 -
Clacu05g0164 618 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 229 599 - -
Clacu05g0164 618 Pfam Mechanosensitive ion channel, beta-domain 429 496 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu05g0164 618 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 348 428 IPR011014 GO:0016020(InterPro)
Clacu05g0164 618 SUPERFAMILY Sm-like ribonucleoproteins 429 494 IPR010920 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0164 K22047 - - csv:101220483 901.353
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu05g0164 . 208 601 Mechanosensitive Ion Channel Family AT4G00290 66.5 6.4e-153 537.7
Clacu08g1323 . 15 656 Mechanosensitive Ion Channel Family AT5G10490 58.5 1.3e-196 683.3
Clacu10g0760 . 166 784 Mechanosensitive Ion Channel Family AT5G10490 58.0 4.1e-187 651.7
Clacu08g1323 . 15 636 Mechanosensitive Ion Channel Family AT1G58200 58.0 2.8e-199 692.2
Clacu10g0760 . 166 561 Mechanosensitive Ion Channel Family AT1G58200 71.2 1.1e-163 573.9
Clacu02g1153 . 43 928 Mechanosensitive Ion Channel Family AT1G53470 54.8 3.1e-259 891.7
Clacu02g0409 . 91 952 Mechanosensitive Ion Channel Family AT1G53470 51.1 1.0e-238 823.5
Clacu02g1153 . 43 926 Mechanosensitive Ion Channel Family AT3G14810 53.3 1.1e-245 846.7
Clacu02g1153 . 47 928 Mechanosensitive Ion Channel Family AT1G78610 58.4 1.2e-279 959.5
Clacu02g0409 . 59 952 Mechanosensitive Ion Channel Family AT1G78610 55.9 4.9e-270 927.5
Clacu02g1153 . 226 928 Mechanosensitive Ion Channel Family AT2G17000 61.6 4.1e-237 818.1
Clacu02g0409 . 266 934 Mechanosensitive Ion Channel Family AT2G17000 58.7 1.1e-221 766.9
Clacu02g1153 . 1 675 Mechanosensitive Ion Channel Family AT2G17010 50.3 4.1e-163 572.0
Clacu05g1722 . 62 719 Mechanosensitive Ion Channel Family AT5G12080 58.2 2.9e-202 702.2
Clacu03g1565 . 58 750 Mechanosensitive Ion Channel Family AT5G12080 53.7 6.6e-199 691.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008844 1 0 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 2 1 1 33