Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0176 ATGGCGGTTGTGAGTGCTATGCTAGCAACTACACCTCGAGCTGGTCCAATTAATTATGCTGAAGCTTCACCAATTATGATCAGCTCAAGCAGAGAGATTGTGGAAGAGCCTGTGGGAGCTATTAGTGAAGATGTAATTTGTGTTGCTGTTGGGAAAGATGTGAAAGAGTGCTTATCAGTTTTGAGATATGCACTAAAATCCTCAGGTGGGAAGAAGATTTGCCTCCTACATATTCATGTCCCCGCACAGATGATTCCATTAATGGGAACCAAGTTTCCAGCAAACTCATTGGAGAAAGAGGAGGTGAGAGCATATCATGAGTTCGAGAAGCAAAATCTGCCGAGGGTCATGAATGAGTATATTCTATACTGTCTTCAAGAAGGGGTTCGTGCCGATAAATTATGTGCTGAAGCTGAGTGTATTGAAAAGGGAATAGTTGATATGATTTCCCTGCACAGGATAAATAAGCTCGTTATGGGAGCAGCTGTAGACAAGAGTTATTCAAGGAGAATGGTGGATCTGAAGTCTAAGAAAGCCATTTACGTGCGTTCACAGGCACCGGCTTTCTGTCACATTGACTTTATTTGCAAGGGGAACCTCATCTGCACCAGGGAGGGTAGATCAGATGGAGCTCAAGTAGAAACCGTCATCTCATCACCACAAACAAGTCCAGACGCTGAATCCTCAGAAACTACCCACTGGAGATCTCAGTCACTGCCACTTGAACAGTTTAATAGCAGGGAAGTCGGAACTCCTTCCAATGTACGTCCTAGAGGGAGATCATTGCTTTTTGACCATTTTAGAGGGAGCACACTAGATCCTTCTTCTCCAGATATTATGAGTGGGGTTCATACTGCAAGAAACTTGGATGTTAACGAGGCTATGGGTGAATGGGGTTTATTAACAAGGAGAAGTCCTTCTGAAAGGTCAGACAATTCCATACGCTCTCCTCGTGGTGTGATTGATATGGCTCCGTCCCCACTTTCTAGGGTTGAGTTATGTGCAAATAGGCCGGAGGATGGGAAGACCAGTGATTGCCTTTACAATCAATGTGAACGGGTGATGATGGAGGCTGCAAATGCAAGGCGCGAAGCATTTTTAGAGGCAATTGCGCGCAGAAAATCTGAGAAAGAAACTGTTAATGCTCTACACAGGGTTAGAGCTGCAGAAGGGTTATATGCTGAAGAACTGAAACAAAGGAAGGAGGTTGAACAAGAGCTAGCGAAGGAAAAGGAAAAACTTGAAAGTATAAAGGCACAACTAAATGAACAGATGGAAGAACTCCGGATAGCCCAAGATCAGAAGGCAAGTCTAGAGAGAGATCTTTTAGAATCTGATCTAACCGCAAAGGAGTTGGAGCAAAAGATTCTTTCTGCTGTTGAATTGTTACAGAGTTACAAAAGAGAGCGAGAGGAGTTGCAGATACAACGCGACAATGCACTTAGAGAAGCAGAGGAGCTTAGAAAAAATCAATCCACAGGCCAATACCTTCCGCAGTTCTTTACTGAGTTCCCTTTTCGGGAGATCGAGGAAGCAACTAAAAACTTTGATCCCTTCCTGAAGATTGGAGAAGGGGGATATGGAAGTATATTCCGAGGTAACTTGCGTCATACTATGGTGGCTATAAAAATTCTACATTCTGATAGCTCTCAAGGCCCCTCTGAATTTCAACAAGAGGTTAATGTATTGAGTAAGATGAGACATCCCAATCTTGTCACGCTCATTGGTGCCTGTCCTGAAGCTTGGGTTCTCATCTACGAATACCTCTCTAATGGAAGCCTCGAAGATAGGTTAAGCTGCAAGGATAATACTCCACCTTTATCTTGGCAAACACGAATACGTATCGCTACCGAGTTATGCTCGGCCCTTATGTTTCTTCACTCAAGTAAGCCCCACAGCATCATTCATGGTGACTTGAAACCTGCAAATGTATTACTTGATGCAAATTTTGTATGCAAGCTTGGAGACTTTGGAATTTGTCGCTTATTGTCTCGGGGTGAAATGCTAAACAACGAAACACTTGTTTGGAGAACTGACAACCCCAAGGGGACTTTTGCTTACATGGATCCTGAATTCCTTTCATCTGGAGAGCTAACAACAAAGTCAGATGTTTATTCATTCGGGATAATACTTTTGCGGTTATTGACTGGTAGATCTGCAATGGGGATATCAAAGGAAGTGCAATATGCAATGGCAAATGGAAAGTTAGAATCCATTTTGGATCCTTTAGCAGGAGATTGGCCGTTCGTGCAGGCTGAACAGATCGCTCGATTGGCATTGAGGTGTTGTGATATGAAGCGAAAGAGCCGCCCCGATCTCATTACTGATGTCTGGAGGGTGCTTGGACCAATGAGAGCTTCCTGTGGTGGCCTATTGTCCGTCCAGCTCGGTTCTGCAGAACACTCACATCCTCCCCCTTATTTTATCTGTCCCATCTTCCAGGAAGTCATGCAAGATCCACATGTAGCTGCAGATGGTTTTACATATGAAGCGGAGGCTGTGAGGGGATGGCTAGACAGTGGACACGATACTTCACCAATGACAAATCTTAGGCTCGAGCACCGCAACCTCGTCCCAAACCGTGCTCTTCGTTCTGCTATCCAAGAGTGGCTCCAACGGAACTGA 2625 44.5 MAVVSAMLATTPRAGPINYAEASPIMISSSREIVEEPVGAISEDVICVAVGKDVKECLSVLRYALKSSGGKKICLLHIHVPAQMIPLMGTKFPANSLEKEEVRAYHEFEKQNLPRVMNEYILYCLQEGVRADKLCAEAECIEKGIVDMISLHRINKLVMGAAVDKSYSRRMVDLKSKKAIYVRSQAPAFCHIDFICKGNLICTREGRSDGAQVETVISSPQTSPDAESSETTHWRSQSLPLEQFNSREVGTPSNVRPRGRSLLFDHFRGSTLDPSSPDIMSGVHTARNLDVNEAMGEWGLLTRRSPSERSDNSIRSPRGVIDMAPSPLSRVELCANRPEDGKTSDCLYNQCERVMMEAANARREAFLEAIARRKSEKETVNALHRVRAAEGLYAEELKQRKEVEQELAKEKEKLESIKAQLNEQMEELRIAQDQKASLERDLLESDLTAKELEQKILSAVELLQSYKREREELQIQRDNALREAEELRKNQSTGQYLPQFFTEFPFREIEEATKNFDPFLKIGEGGYGSIFRGNLRHTMVAIKILHSDSSQGPSEFQQEVNVLSKMRHPNLVTLIGACPEAWVLIYEYLSNGSLEDRLSCKDNTPPLSWQTRIRIATELCSALMFLHSSKPHSIIHGDLKPANVLLDANFVCKLGDFGICRLLSRGEMLNNETLVWRTDNPKGTFAYMDPEFLSSGELTTKSDVYSFGIILLRLLTGRSAMGISKEVQYAMANGKLESILDPLAGDWPFVQAEQIARLALRCCDMKRKSRPDLITDVWRVLGPMRASCGGLLSVQLGSAEHSHPPPYFICPIFQEVMQDPHVAADGFTYEAEAVRGWLDSGHDTSPMTNLRLEHRNLVPNRALRSAIQEWLQRN 874
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1621548 1626458 - ClG42_05g0017600.10 Clacu05g0176 247923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0176 874 SMART serkin_6 516 781 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g0176 874 SUPERFAMILY RING/U-box 799 874 - -
Clacu05g0176 874 Gene3D Transferase(Phosphotransferase) domain 1 589 787 - -
Clacu05g0176 874 ProSiteProfiles U-box domain profile. 803 874 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Clacu05g0176 874 SMART Ubox_2 807 870 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Clacu05g0176 874 Pfam U-box domain 805 874 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Clacu05g0176 874 MobiDBLite consensus disorder prediction 216 252 - -
Clacu05g0176 874 MobiDBLite consensus disorder prediction 216 257 - -
Clacu05g0176 874 ProSiteProfiles Protein kinase domain profile. 516 808 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g0176 874 ProSitePatterns Protein kinases ATP-binding region signature. 522 543 IPR017441 GO:0005524(InterPro)
Clacu05g0176 874 ProSitePatterns Serine/Threonine protein kinases active-site signature. 634 646 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu05g0176 874 SUPERFAMILY Protein kinase-like (PK-like) 490 773 IPR011009 -
Clacu05g0176 874 Gene3D Phosphorylase Kinase; domain 1 496 588 - -
Clacu05g0176 874 CDD STK_N 45 198 - -
Clacu05g0176 874 Pfam Protein kinase domain 521 772 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g0176 874 Coils Coil 386 490 - -
Clacu05g0176 874 CDD RING-Ubox_WDSUB1-like 805 860 - -
Clacu05g0176 874 PANTHER OS02G0152300 PROTEIN 47 868 IPR051348 -
Clacu05g0176 874 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 802 874 IPR013083 -
Clacu05g0176 874 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 488 588 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1901 Clacu-Chr1:31135242 Clacu05g0176 Clacu-Chr5:1621548 3.40E-71 dispersed
Clacu02g2075 Clacu-Chr2:34005033 Clacu05g0176 Clacu-Chr5:1621548 2.90E-133 dispersed
Clacu05g0176 Clacu-Chr5:1621548 Clacu11g0311 Clacu-Chr11:2797434 7.10E-91 dispersed
Clacu05g0169 Clacu-Chr5:1557720 Clacu05g0176 Clacu-Chr5:1621548 1.70E-44 proximal
Clacu07g0204 Clacu-Chr7:2417510 Clacu05g0176 Clacu-Chr5:1621548 3.00E-06 transposed
Clacu11g0461 Clacu-Chr11:4379198 Clacu05g0176 Clacu-Chr5:1621548 8.20E-47 wgd
Clacu05g0176 Clacu-Chr5:1621548 Clacu05g0964 Clacu-Chr5:8539381 2.70E-151 wgd
Clacu05g0176 Clacu-Chr5:1621548 Clacu06g0365 Clacu-Chr6:4373222 2.70E-231 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73533 PF00069 Pkinase 3.20E-42 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0176 - - - 0.0