Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu05g0198 | ATGGACTCATCTTGTAATATTTGGAAGCAAAATGTGCTATATGGTAGTGAAAGAACATATTGCAAGACGTTGGACCAGTTTGGTCCCAGCAGTGTTCTTAGAAATAGAATTATTGATGCCAAGTTGACTGGCGGTTCAAGAGTAAGTTATAAAGTGCCTAAGAAGAGAAACAGAATTGTAGCATCTAGTGATTCAAATCATGTGAGTCTGGTTTGTGCTAGCAAGTTTGAAGGAGCTTTGCAATATTTTACGCACAAGAGATTCTTGAACTGGAACAATAAGGTAAGTGGAAGAAGGATGGGAATGGTTCATTTAGAGTGTCAAAGCAATGATTCTTTAGCATTTATTGATGGAAATGGCAGAAATATGGAATATGTAAATACTGATGATGAAGGGTCCAGTTCTGGGCCTACCGATGCTGTAGGGTCAGGTGGTTCCAGAGAAGGGGGCGGAGAAGCAGAAACGGTAGAAACGGACATACCGACTGTGGATGAGCTCAGAGAATTGCTGCAAAAGGCCATGAAAGAACTGGAAGTTGCGAGACTTAACAGCACAATGTTCGAGGAGAAGGCCCAAAAAATATCAGAAGCAGCAATAGCTTTGCAAGATGAAGCAACCCGTGCTTGGAATGATGTGAACTCTACTCTCGATTCTGTACAACAGATAGTGAATGAAGAATATGCTGCCAAAGAAGCCGTTCAAAAAGCAACCATGGCTCTTTCATTAGCAGAGGCAAGGCTTCAGGTGGCAATAGAGTCATTGGAGCTGGCAAAAGGAGGAAACAATTTTCCGGAAACATCAGTAGATAGTGAGGGGGCAATTGATGGCAAGGAAGAGCAAGAAGTGTTGTTAGTTGCTCAGGAGGACATCAAAGAATGCCGAGCAAATTTGGAAAATTGTGATGCGGAATTGAAGCGCTTAAAGAGTAAAAAGGAAGAGTTACAGAAGGAAGTGGACAGGTTGAATGAGTTAGCTGAAAAAGCACAATTGAATGCGTTGAAAGCTGAAGAAGATGTGGCAACAATAATGACTTTGGCTGAGCAAGCTGTTGCTTTTGAACTTGAGGCTGCCCAAAAGGTCAGTGATGCTGAAATAGCTTTACAGAAAGTGGAGAAATCTTTATCAAGTTCTTTTGTTGACACTTCGGACGTCACTCAGGGGCCAAATGTTATTGAAGAAGTTGAGAACGAGGATAACAAGGCAGTTCTAGAAATCTCTGGTGACATTGCTGTTGAAATGGATAGAGAGTTGCCACTTAGTGGTGATTCCTTAGCTATCAAATCTCTACCAGGTAGCTTTTCAGATTCTGAAGACTCTGATCAACCATATTACTTAAGTGATAGCGAGAATGGAAAATTGAGTTCAGACTCTGTGAAGGAGGTTGAATCTGGAGCAGAGAAGGCTATTTTGAGTCAAACAAAAAAGCAGGAAACACAGAAGGATTTGACCAGAGAAGGCTCACCTTTAAACTCCCCCAAGGCTCTATTGAAAAAATCTTCTCGCTTTTTTTCAGCATCATTCTTCTCCTTTACAGTTGATGGGACAGAGTTCACTCCAGCATTAGTCTTCCAGGGTCTCCTGGATTTCACTAAAAAGCAATTGCCGAAGCTAATTGTTGGAGCAGTTCTATTAGGAGCAGGGATTGCTATCTTTGCAAATCGAGCAGAAAGGAATTCTCAGATGATTCAGCAGCCTGATGTTGTCACCACTAGCACTGATGAAGTTTCCTTGAACACAAAGCCTTTATTTCAACAATTAAGGAAACTTCCGAAAAGAGTGAAAAAATTAATTTCACAGCTTCCCCATCAAGAGGTGAATGAAGAGGAGGCTTCACTCTTAGACATGTTATGGTTGTTGCTTGCTAGTGTTATATTTGTGCCAACATTTCAGAAACTTCCTGGAGGAAGTCCTGTCCTTGGGTACTTGGCTGCTGGTATTTTAATTGGGCCATATGGTCTCTCCATAATCCGTCACGTGCATGGAACCAAAGCGATTGCTGAATTTGGAGTTGTTTTTCTCCTGTTCAACATTGGCCTGGAGTTATCAGTTGAGAGGCTAAGTTCCATGAAGAAATATGTTTTTGGGTTAGGGTCTGCACAGGTTTTGGTTACAGCTGTAGTGGTTGGCTTGGTTGCTCACATTGTCTGTGGGCAGGCTGGCCCAGCTGCAATTGTCATTGGAAATGGATTGGCTTTGTCATCCACTGCTGTTGTCCTTCAGGTGTTGCAAGAGCGAGGTGAGAGCACTTCACGGCATGGGCGTGCTACATTTTCTGTCTTACTATTCCAGGATTTGGCCGTTGTGGTTTTGCTGATTCTTATACCTCTAATTTCACCTAATTCATCCAAAGGAGGGATTGGTTTTCAAGCCATTGCTGAAGCTCTTGGCCTGGCTGCTGTGAAGGCAATAGTTGCTATTTCTGCCATAATAGCTGGTGGGCGCCTGCTACTACGACCAATTTATAAACAAATAGCTGAAAATCAAAATGCAGAAATATTCTCTGCCAACACACTACTTGTCATTCTGGGAACAAGTCTACTTACTGCCAGGGCTGGACTATCAATGGCGCTGGGTGCTTTTCTAGCAGGTTTACTTCTAGCAGAAACGGAATTCTCCTTGCAGGTTGAATCTGATATTGCTCCATATCGTGGCCTTCTATTGGGTCTCTTCTTCATGACGGTTGGGATGTCTATCGATCCAAAACTTCTTCTTTCTAACTTTCCAATTATCATGGGGTCTTTGGGACTTCTTATTGGTGGCAAGACTATATTGGTTGCCTTGGTTGGTAGATTTTTTGGTATCTCAATTATATCTGCGTTAAGAGTTGGGCTGCTTCTTGCTCCTGGTGGAGAATTTGCTTTTGTGGCGTTTGGTGAAGCTGTCAATCAGGGTATAATGTCTTCTCAACTATCCTCTTTATTATTTCTTGTTGTGGGACTTTCAATGGCCCTTACACCGTGGCTAGCTGCTGGCGGTCAGTTAATTGCTTCTCGATTTGAGCAGCATGATGTTCGGAGTTTATTACCTGTTGAAAGTGAGACCGACGATTTGCAAGATCATATCATTATTTGCGGATTTGGACGAGTTGGTCAGATAATAGCCCAGCTTCTGTCAGAGCGACTGATTCCCTTTGTTGCCCTTGATGTGAGGAGTGATAGAGTGGCCGTAGGACGTGCCTTAGACCTTCCTGTGTATTTTGGAGATGCAGGAAGTCGAGAGGTTCTACATAAAGTTGGTGCTGAAAGGGCATGTGCTGCTGCAATAACACTGGATACACCGGGTGCAAATTACAGAACTGTTTGGGCTTTGAGCAAGTATTTCCCTAATGTTAAGACTTTTGTTCGAGCTCATGATGTTGATCACGGCCTTAATTTAGAGAAGGCTGGTGCTACTGCGGTAGTTCCCGAGACGTTGGAACCGAGCTTACAGTTGGCTGCTGCGGTTCTTGCTCAGGCTAAACTACCCATGTCAGAGATTGCTGCAACAATTAACGAGTTTAGGTCCCGACATTTATCTGAGCTGACTGAGATGAGAATCAAGTCACTGAAGGAACATTGGCCATATGATATCAGTGGTCCATGTGTTTGCGGTGAAGAGAAAGAAAGAATAAAAGGAAGGGTGGGGGTTGTCCAATATCCAAAAAGCAAGCCACCCCGCCCCCTCAATTCTCACTCTCAAGAGTCCCGCGCCGCCACTTCTCCGCCGTACTCTCCGCCGTCCTCTACGTCGGTGCTGCTCCTCATCCGCTCTGTACCTCTATTATTCCTTATTCTTAGCAGAACGTGCAGAATTTTCTTACGCCATTTTCTAATGGCGTCGTCGATGAAATTCACAGATTGCTCCCCTTCCGCAACTGTTCGTCTTTGCCCCTCTACTCGAACCAGGCCTCGAAGCTCCGATGGCGCTGTTCTCTTTCACCGTCTTCTTGGCCTTTCGCGCCCTGCCTTTCCTAGAACTTTCGTTTCTCGCTCTTCGACTTCAACTTTGCCCGTCATCTCTGCTTCAATTTCAACCGACGCAACTGCAGAAGTGATTGATGGAAAATTAGTGGCGAAGCAGATTAGAGAGGAGATTACTGCTGAAGTATCACGAATGAAGGAGGCCATTGGTGTTGTTCCAGGCTTAGCAGTCATCCTTGTTGGAGATAGGAAGGATTCTGCAACTTATGTACGAAATAAGAAAAAAGCTTGTGAATCTGTGGGTATTAAATCTTTTGAAGTAAACTTACCTGAAGATTGTACTGAGCAAGAAGTACTCAAGTATGTATCCGACTTCAATGATGATCCATCTGTCCATGGAATCCTTGTTCAGTTACCTTTACCTAAACATATGAACGAACAGAATATATTGCATGCTGTTAGCATTGAGAAAGATGTAGATGGATTTCACCCACTAAACATCGGTCGTCTTGCAATGAGAGGAGAAGAACCATTGTTTGTTCCATGTACGCCAAAAGGGTGTATTGAATTGCTGCATAGATATAACATTAGTATCAAAGGGAAGAGAGCTGTTGTAATTGGTCGAAGCAATATTGTAGGAACTCCAGCTGCTTTTTTGCTTCAAGGAGAAGATGCAACAGTGAGCGTTGTTCATTCTAGGACCAAAGACCCTGAAGAGTTAACAAGACAGGCTGATATCATCATCTCTGCAGTTGGCAAAGCCAATATGGTTAAGGGCAGTTGGATAAAGCCTGGAGCAGTTATTATCGACGTTGGAATTAATCCAATAGAGGATGCAAGTAGTCCTCGTGGGTATCGGCTAGTAGGAGATGTTTGTTATGAGGAGGCCAGCAAAATTGCTTCAGCCATTACTCCTGTACCTGGGGGAGTTGGGCCGATGACGATAGCGATGCTGCTCTCCAACACACTTACAGCAGCCAAAAGAACACATAACTTCCAGTGA | 4902 | 43.66 | MDSSCNIWKQNVLYGSERTYCKTLDQFGPSSVLRNRIIDAKLTGGSRVSYKVPKKRNRIVASSDSNHVSLVCASKFEGALQYFTHKRFLNWNNKVSGRRMGMVHLECQSNDSLAFIDGNGRNMEYVNTDDEGSSSGPTDAVGSGGSREGGGEAETVETDIPTVDELRELLQKAMKELEVARLNSTMFEEKAQKISEAAIALQDEATRAWNDVNSTLDSVQQIVNEEYAAKEAVQKATMALSLAEARLQVAIESLELAKGGNNFPETSVDSEGAIDGKEEQEVLLVAQEDIKECRANLENCDAELKRLKSKKEELQKEVDRLNELAEKAQLNALKAEEDVATIMTLAEQAVAFELEAAQKVSDAEIALQKVEKSLSSSFVDTSDVTQGPNVIEEVENEDNKAVLEISGDIAVEMDRELPLSGDSLAIKSLPGSFSDSEDSDQPYYLSDSENGKLSSDSVKEVESGAEKAILSQTKKQETQKDLTREGSPLNSPKALLKKSSRFFSASFFSFTVDGTEFTPALVFQGLLDFTKKQLPKLIVGAVLLGAGIAIFANRAERNSQMIQQPDVVTTSTDEVSLNTKPLFQQLRKLPKRVKKLISQLPHQEVNEEEASLLDMLWLLLASVIFVPTFQKLPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHIVCGQAGPAAIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGIGFQAIAEALGLAAVKAIVAISAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPIIMGSLGLLIGGKTILVALVGRFFGISIISALRVGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLVVGLSMALTPWLAAGGQLIASRFEQHDVRSLLPVESETDDLQDHIIICGFGRVGQIIAQLLSERLIPFVALDVRSDRVAVGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYRTVWALSKYFPNVKTFVRAHDVDHGLNLEKAGATAVVPETLEPSLQLAAAVLAQAKLPMSEIAATINEFRSRHLSELTEMRIKSLKEHWPYDISGPCVCGEEKERIKGRVGVVQYPKSKPPRPLNSHSQESRAATSPPYSPPSSTSVLLLIRSVPLLFLILSRTCRIFLRHFLMASSMKFTDCSPSATVRLCPSTRTRPRSSDGAVLFHRLLGLSRPAFPRTFVSRSSTSTLPVISASISTDATAEVIDGKLVAKQIREEITAEVSRMKEAIGVVPGLAVILVGDRKDSATYVRNKKKACESVGIKSFEVNLPEDCTEQEVLKYVSDFNDDPSVHGILVQLPLPKHMNEQNILHAVSIEKDVDGFHPLNIGRLAMRGEEPLFVPCTPKGCIELLHRYNISIKGKRAVVIGRSNIVGTPAAFLLQGEDATVSVVHSRTKDPEELTRQADIIISAVGKANMVKGSWIKPGAVIIDVGINPIEDASSPRGYRLVGDVCYEEASKIASAITPVPGGVGPMTIAMLLSNTLTAAKRTHNFQ | 1633 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 1779180 | 1795971 | + | ClG42_05g0019800.10 | Clacu05g0198 | 247945 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu05g0198 | 1633 | SUPERFAMILY | NAD(P)-binding Rossmann-fold domains | 1462 | 1628 | IPR036291 | - | |
| Clacu05g0198 | 1633 | Gene3D | - | 1016 | 1180 | - | - | |
| Clacu05g0198 | 1633 | PANTHER | K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC | 327 | 1180 | - | GO:0009507(PANTHER)|GO:0015386(PANTHER)|GO:0016020(PANTHER) | |
| Clacu05g0198 | 1633 | MobiDBLite | consensus disorder prediction | 1207 | 1238 | - | - | |
| Clacu05g0198 | 1633 | FunFam | K(+) efflux antiporter 2 chloroplastic | 608 | 994 | - | - | |
| Clacu05g0198 | 1633 | FunFam | Bifunctional protein FolD | 1479 | 1606 | - | - | |
| Clacu05g0198 | 1633 | Pfam | Sodium/hydrogen exchanger family | 622 | 989 | IPR006153 | GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro) | |
| Clacu05g0198 | 1633 | ProSiteProfiles | RCK N-terminal domain profile. | 1020 | 1142 | IPR003148 | GO:0006813(InterPro) | |
| Clacu05g0198 | 1633 | Gene3D | Leucine Dehydrogenase, chain A, domain 1 | 1347 | 1624 | - | - | |
| Clacu05g0198 | 1633 | CDD | NAD_bind_m-THF_DH_Cyclohyd | 1455 | 1627 | IPR020631 | GO:0004488(InterPro) | |
| Clacu05g0198 | 1633 | PRINTS | Tetrahydrofolate dehydrogenase/cyclohydrolase family signature | 1545 | 1574 | IPR000672 | GO:0004488(InterPro) | |
| Clacu05g0198 | 1633 | PRINTS | Tetrahydrofolate dehydrogenase/cyclohydrolase family signature | 1373 | 1395 | IPR000672 | GO:0004488(InterPro) | |
| Clacu05g0198 | 1633 | PRINTS | Tetrahydrofolate dehydrogenase/cyclohydrolase family signature | 1586 | 1602 | IPR000672 | GO:0004488(InterPro) | |
| Clacu05g0198 | 1633 | PRINTS | Tetrahydrofolate dehydrogenase/cyclohydrolase family signature | 1603 | 1621 | IPR000672 | GO:0004488(InterPro) | |
| Clacu05g0198 | 1633 | PRINTS | Tetrahydrofolate dehydrogenase/cyclohydrolase family signature | 1449 | 1470 | IPR000672 | GO:0004488(InterPro) | |
| Clacu05g0198 | 1633 | PRINTS | Tetrahydrofolate dehydrogenase/cyclohydrolase family signature | 1414 | 1441 | IPR000672 | GO:0004488(InterPro) | |
| Clacu05g0198 | 1633 | PRINTS | Tetrahydrofolate dehydrogenase/cyclohydrolase family signature | 1496 | 1516 | IPR000672 | GO:0004488(InterPro) | |
| Clacu05g0198 | 1633 | NCBIfam | monovalent cation:proton antiporter-2 (CPA2) family protein | 619 | 899 | IPR004771 | GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro) | |
| Clacu05g0198 | 1633 | MobiDBLite | consensus disorder prediction | 431 | 490 | - | - | |
| Clacu05g0198 | 1633 | FunFam | K(+) efflux antiporter 2 chloroplastic | 1016 | 1180 | - | - | |
| Clacu05g0198 | 1633 | Coils | Coil | 163 | 183 | - | - | |
| Clacu05g0198 | 1633 | MobiDBLite | consensus disorder prediction | 126 | 141 | - | - | |
| Clacu05g0198 | 1633 | Coils | Coil | 283 | 338 | - | - | |
| Clacu05g0198 | 1633 | Gene3D | - | 1345 | 1606 | - | - | |
| Clacu05g0198 | 1633 | MobiDBLite | consensus disorder prediction | 124 | 157 | - | - | |
| Clacu05g0198 | 1633 | FunFam | Bifunctional protein FolD | 1347 | 1487 | - | - | |
| Clacu05g0198 | 1633 | MobiDBLite | consensus disorder prediction | 431 | 452 | - | - | |
| Clacu05g0198 | 1633 | Pfam | TrkA-N domain | 1021 | 1134 | IPR003148 | GO:0006813(InterPro) | |
| Clacu05g0198 | 1633 | MobiDBLite | consensus disorder prediction | 1218 | 1238 | - | - | |
| Clacu05g0198 | 1633 | SUPERFAMILY | Aminoacid dehydrogenase-like, N-terminal domain | 1342 | 1461 | IPR046346 | - | |
| Clacu05g0198 | 1633 | Hamap | Bifunctional protein FolD [folD]. | 1342 | 1630 | IPR000672 | GO:0004488(InterPro) | |
| Clacu05g0198 | 1633 | ProSitePatterns | Tetrahydrofolate dehydrogenase/cyclohydrolase signature 2. | 1607 | 1615 | IPR020867 | GO:0003824(InterPro) | |
| Clacu05g0198 | 1633 | Gene3D | - | 608 | 995 | IPR038770 | - | |
| Clacu05g0198 | 1633 | SUPERFAMILY | NAD(P)-binding Rossmann-fold domains | 1017 | 1159 | IPR036291 | - | |
| Clacu05g0198 | 1633 | Pfam | Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain | 1463 | 1629 | IPR020631 | GO:0004488(InterPro) | |
| Clacu05g0198 | 1633 | Pfam | Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain | 1345 | 1460 | IPR020630 | GO:0004488(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu04g0552 | Clacu-Chr4:18802132 | Clacu05g0198 | Clacu-Chr5:1779180 | 7.90E-116 | dispersed | |
| Clacu05g0198 | Clacu-Chr5:1779180 | Clacu10g1070 | Clacu-Chr10:22765178 | 8.60E-106 | dispersed | |
| Clacu05g0198 | Clacu-Chr5:1779180 | Clacu08g1856 | Clacu-Chr8:27852957 | 2.90E-37 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu05g0198 | K03455 | - | csv:101213081 | 1986.85 |