Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0198 ATGGACTCATCTTGTAATATTTGGAAGCAAAATGTGCTATATGGTAGTGAAAGAACATATTGCAAGACGTTGGACCAGTTTGGTCCCAGCAGTGTTCTTAGAAATAGAATTATTGATGCCAAGTTGACTGGCGGTTCAAGAGTAAGTTATAAAGTGCCTAAGAAGAGAAACAGAATTGTAGCATCTAGTGATTCAAATCATGTGAGTCTGGTTTGTGCTAGCAAGTTTGAAGGAGCTTTGCAATATTTTACGCACAAGAGATTCTTGAACTGGAACAATAAGGTAAGTGGAAGAAGGATGGGAATGGTTCATTTAGAGTGTCAAAGCAATGATTCTTTAGCATTTATTGATGGAAATGGCAGAAATATGGAATATGTAAATACTGATGATGAAGGGTCCAGTTCTGGGCCTACCGATGCTGTAGGGTCAGGTGGTTCCAGAGAAGGGGGCGGAGAAGCAGAAACGGTAGAAACGGACATACCGACTGTGGATGAGCTCAGAGAATTGCTGCAAAAGGCCATGAAAGAACTGGAAGTTGCGAGACTTAACAGCACAATGTTCGAGGAGAAGGCCCAAAAAATATCAGAAGCAGCAATAGCTTTGCAAGATGAAGCAACCCGTGCTTGGAATGATGTGAACTCTACTCTCGATTCTGTACAACAGATAGTGAATGAAGAATATGCTGCCAAAGAAGCCGTTCAAAAAGCAACCATGGCTCTTTCATTAGCAGAGGCAAGGCTTCAGGTGGCAATAGAGTCATTGGAGCTGGCAAAAGGAGGAAACAATTTTCCGGAAACATCAGTAGATAGTGAGGGGGCAATTGATGGCAAGGAAGAGCAAGAAGTGTTGTTAGTTGCTCAGGAGGACATCAAAGAATGCCGAGCAAATTTGGAAAATTGTGATGCGGAATTGAAGCGCTTAAAGAGTAAAAAGGAAGAGTTACAGAAGGAAGTGGACAGGTTGAATGAGTTAGCTGAAAAAGCACAATTGAATGCGTTGAAAGCTGAAGAAGATGTGGCAACAATAATGACTTTGGCTGAGCAAGCTGTTGCTTTTGAACTTGAGGCTGCCCAAAAGGTCAGTGATGCTGAAATAGCTTTACAGAAAGTGGAGAAATCTTTATCAAGTTCTTTTGTTGACACTTCGGACGTCACTCAGGGGCCAAATGTTATTGAAGAAGTTGAGAACGAGGATAACAAGGCAGTTCTAGAAATCTCTGGTGACATTGCTGTTGAAATGGATAGAGAGTTGCCACTTAGTGGTGATTCCTTAGCTATCAAATCTCTACCAGGTAGCTTTTCAGATTCTGAAGACTCTGATCAACCATATTACTTAAGTGATAGCGAGAATGGAAAATTGAGTTCAGACTCTGTGAAGGAGGTTGAATCTGGAGCAGAGAAGGCTATTTTGAGTCAAACAAAAAAGCAGGAAACACAGAAGGATTTGACCAGAGAAGGCTCACCTTTAAACTCCCCCAAGGCTCTATTGAAAAAATCTTCTCGCTTTTTTTCAGCATCATTCTTCTCCTTTACAGTTGATGGGACAGAGTTCACTCCAGCATTAGTCTTCCAGGGTCTCCTGGATTTCACTAAAAAGCAATTGCCGAAGCTAATTGTTGGAGCAGTTCTATTAGGAGCAGGGATTGCTATCTTTGCAAATCGAGCAGAAAGGAATTCTCAGATGATTCAGCAGCCTGATGTTGTCACCACTAGCACTGATGAAGTTTCCTTGAACACAAAGCCTTTATTTCAACAATTAAGGAAACTTCCGAAAAGAGTGAAAAAATTAATTTCACAGCTTCCCCATCAAGAGGTGAATGAAGAGGAGGCTTCACTCTTAGACATGTTATGGTTGTTGCTTGCTAGTGTTATATTTGTGCCAACATTTCAGAAACTTCCTGGAGGAAGTCCTGTCCTTGGGTACTTGGCTGCTGGTATTTTAATTGGGCCATATGGTCTCTCCATAATCCGTCACGTGCATGGAACCAAAGCGATTGCTGAATTTGGAGTTGTTTTTCTCCTGTTCAACATTGGCCTGGAGTTATCAGTTGAGAGGCTAAGTTCCATGAAGAAATATGTTTTTGGGTTAGGGTCTGCACAGGTTTTGGTTACAGCTGTAGTGGTTGGCTTGGTTGCTCACATTGTCTGTGGGCAGGCTGGCCCAGCTGCAATTGTCATTGGAAATGGATTGGCTTTGTCATCCACTGCTGTTGTCCTTCAGGTGTTGCAAGAGCGAGGTGAGAGCACTTCACGGCATGGGCGTGCTACATTTTCTGTCTTACTATTCCAGGATTTGGCCGTTGTGGTTTTGCTGATTCTTATACCTCTAATTTCACCTAATTCATCCAAAGGAGGGATTGGTTTTCAAGCCATTGCTGAAGCTCTTGGCCTGGCTGCTGTGAAGGCAATAGTTGCTATTTCTGCCATAATAGCTGGTGGGCGCCTGCTACTACGACCAATTTATAAACAAATAGCTGAAAATCAAAATGCAGAAATATTCTCTGCCAACACACTACTTGTCATTCTGGGAACAAGTCTACTTACTGCCAGGGCTGGACTATCAATGGCGCTGGGTGCTTTTCTAGCAGGTTTACTTCTAGCAGAAACGGAATTCTCCTTGCAGGTTGAATCTGATATTGCTCCATATCGTGGCCTTCTATTGGGTCTCTTCTTCATGACGGTTGGGATGTCTATCGATCCAAAACTTCTTCTTTCTAACTTTCCAATTATCATGGGGTCTTTGGGACTTCTTATTGGTGGCAAGACTATATTGGTTGCCTTGGTTGGTAGATTTTTTGGTATCTCAATTATATCTGCGTTAAGAGTTGGGCTGCTTCTTGCTCCTGGTGGAGAATTTGCTTTTGTGGCGTTTGGTGAAGCTGTCAATCAGGGTATAATGTCTTCTCAACTATCCTCTTTATTATTTCTTGTTGTGGGACTTTCAATGGCCCTTACACCGTGGCTAGCTGCTGGCGGTCAGTTAATTGCTTCTCGATTTGAGCAGCATGATGTTCGGAGTTTATTACCTGTTGAAAGTGAGACCGACGATTTGCAAGATCATATCATTATTTGCGGATTTGGACGAGTTGGTCAGATAATAGCCCAGCTTCTGTCAGAGCGACTGATTCCCTTTGTTGCCCTTGATGTGAGGAGTGATAGAGTGGCCGTAGGACGTGCCTTAGACCTTCCTGTGTATTTTGGAGATGCAGGAAGTCGAGAGGTTCTACATAAAGTTGGTGCTGAAAGGGCATGTGCTGCTGCAATAACACTGGATACACCGGGTGCAAATTACAGAACTGTTTGGGCTTTGAGCAAGTATTTCCCTAATGTTAAGACTTTTGTTCGAGCTCATGATGTTGATCACGGCCTTAATTTAGAGAAGGCTGGTGCTACTGCGGTAGTTCCCGAGACGTTGGAACCGAGCTTACAGTTGGCTGCTGCGGTTCTTGCTCAGGCTAAACTACCCATGTCAGAGATTGCTGCAACAATTAACGAGTTTAGGTCCCGACATTTATCTGAGCTGACTGAGATGAGAATCAAGTCACTGAAGGAACATTGGCCATATGATATCAGTGGTCCATGTGTTTGCGGTGAAGAGAAAGAAAGAATAAAAGGAAGGGTGGGGGTTGTCCAATATCCAAAAAGCAAGCCACCCCGCCCCCTCAATTCTCACTCTCAAGAGTCCCGCGCCGCCACTTCTCCGCCGTACTCTCCGCCGTCCTCTACGTCGGTGCTGCTCCTCATCCGCTCTGTACCTCTATTATTCCTTATTCTTAGCAGAACGTGCAGAATTTTCTTACGCCATTTTCTAATGGCGTCGTCGATGAAATTCACAGATTGCTCCCCTTCCGCAACTGTTCGTCTTTGCCCCTCTACTCGAACCAGGCCTCGAAGCTCCGATGGCGCTGTTCTCTTTCACCGTCTTCTTGGCCTTTCGCGCCCTGCCTTTCCTAGAACTTTCGTTTCTCGCTCTTCGACTTCAACTTTGCCCGTCATCTCTGCTTCAATTTCAACCGACGCAACTGCAGAAGTGATTGATGGAAAATTAGTGGCGAAGCAGATTAGAGAGGAGATTACTGCTGAAGTATCACGAATGAAGGAGGCCATTGGTGTTGTTCCAGGCTTAGCAGTCATCCTTGTTGGAGATAGGAAGGATTCTGCAACTTATGTACGAAATAAGAAAAAAGCTTGTGAATCTGTGGGTATTAAATCTTTTGAAGTAAACTTACCTGAAGATTGTACTGAGCAAGAAGTACTCAAGTATGTATCCGACTTCAATGATGATCCATCTGTCCATGGAATCCTTGTTCAGTTACCTTTACCTAAACATATGAACGAACAGAATATATTGCATGCTGTTAGCATTGAGAAAGATGTAGATGGATTTCACCCACTAAACATCGGTCGTCTTGCAATGAGAGGAGAAGAACCATTGTTTGTTCCATGTACGCCAAAAGGGTGTATTGAATTGCTGCATAGATATAACATTAGTATCAAAGGGAAGAGAGCTGTTGTAATTGGTCGAAGCAATATTGTAGGAACTCCAGCTGCTTTTTTGCTTCAAGGAGAAGATGCAACAGTGAGCGTTGTTCATTCTAGGACCAAAGACCCTGAAGAGTTAACAAGACAGGCTGATATCATCATCTCTGCAGTTGGCAAAGCCAATATGGTTAAGGGCAGTTGGATAAAGCCTGGAGCAGTTATTATCGACGTTGGAATTAATCCAATAGAGGATGCAAGTAGTCCTCGTGGGTATCGGCTAGTAGGAGATGTTTGTTATGAGGAGGCCAGCAAAATTGCTTCAGCCATTACTCCTGTACCTGGGGGAGTTGGGCCGATGACGATAGCGATGCTGCTCTCCAACACACTTACAGCAGCCAAAAGAACACATAACTTCCAGTGA 4902 43.66 MDSSCNIWKQNVLYGSERTYCKTLDQFGPSSVLRNRIIDAKLTGGSRVSYKVPKKRNRIVASSDSNHVSLVCASKFEGALQYFTHKRFLNWNNKVSGRRMGMVHLECQSNDSLAFIDGNGRNMEYVNTDDEGSSSGPTDAVGSGGSREGGGEAETVETDIPTVDELRELLQKAMKELEVARLNSTMFEEKAQKISEAAIALQDEATRAWNDVNSTLDSVQQIVNEEYAAKEAVQKATMALSLAEARLQVAIESLELAKGGNNFPETSVDSEGAIDGKEEQEVLLVAQEDIKECRANLENCDAELKRLKSKKEELQKEVDRLNELAEKAQLNALKAEEDVATIMTLAEQAVAFELEAAQKVSDAEIALQKVEKSLSSSFVDTSDVTQGPNVIEEVENEDNKAVLEISGDIAVEMDRELPLSGDSLAIKSLPGSFSDSEDSDQPYYLSDSENGKLSSDSVKEVESGAEKAILSQTKKQETQKDLTREGSPLNSPKALLKKSSRFFSASFFSFTVDGTEFTPALVFQGLLDFTKKQLPKLIVGAVLLGAGIAIFANRAERNSQMIQQPDVVTTSTDEVSLNTKPLFQQLRKLPKRVKKLISQLPHQEVNEEEASLLDMLWLLLASVIFVPTFQKLPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHIVCGQAGPAAIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGIGFQAIAEALGLAAVKAIVAISAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPIIMGSLGLLIGGKTILVALVGRFFGISIISALRVGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLVVGLSMALTPWLAAGGQLIASRFEQHDVRSLLPVESETDDLQDHIIICGFGRVGQIIAQLLSERLIPFVALDVRSDRVAVGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYRTVWALSKYFPNVKTFVRAHDVDHGLNLEKAGATAVVPETLEPSLQLAAAVLAQAKLPMSEIAATINEFRSRHLSELTEMRIKSLKEHWPYDISGPCVCGEEKERIKGRVGVVQYPKSKPPRPLNSHSQESRAATSPPYSPPSSTSVLLLIRSVPLLFLILSRTCRIFLRHFLMASSMKFTDCSPSATVRLCPSTRTRPRSSDGAVLFHRLLGLSRPAFPRTFVSRSSTSTLPVISASISTDATAEVIDGKLVAKQIREEITAEVSRMKEAIGVVPGLAVILVGDRKDSATYVRNKKKACESVGIKSFEVNLPEDCTEQEVLKYVSDFNDDPSVHGILVQLPLPKHMNEQNILHAVSIEKDVDGFHPLNIGRLAMRGEEPLFVPCTPKGCIELLHRYNISIKGKRAVVIGRSNIVGTPAAFLLQGEDATVSVVHSRTKDPEELTRQADIIISAVGKANMVKGSWIKPGAVIIDVGINPIEDASSPRGYRLVGDVCYEEASKIASAITPVPGGVGPMTIAMLLSNTLTAAKRTHNFQ 1633
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 1779180 1795971 + ClG42_05g0019800.10 Clacu05g0198 247945
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0198 1633 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1462 1628 IPR036291 -
Clacu05g0198 1633 Gene3D - 1016 1180 - -
Clacu05g0198 1633 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 327 1180 - GO:0009507(PANTHER)|GO:0015386(PANTHER)|GO:0016020(PANTHER)
Clacu05g0198 1633 MobiDBLite consensus disorder prediction 1207 1238 - -
Clacu05g0198 1633 FunFam K(+) efflux antiporter 2 chloroplastic 608 994 - -
Clacu05g0198 1633 FunFam Bifunctional protein FolD 1479 1606 - -
Clacu05g0198 1633 Pfam Sodium/hydrogen exchanger family 622 989 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
Clacu05g0198 1633 ProSiteProfiles RCK N-terminal domain profile. 1020 1142 IPR003148 GO:0006813(InterPro)
Clacu05g0198 1633 Gene3D Leucine Dehydrogenase, chain A, domain 1 1347 1624 - -
Clacu05g0198 1633 CDD NAD_bind_m-THF_DH_Cyclohyd 1455 1627 IPR020631 GO:0004488(InterPro)
Clacu05g0198 1633 PRINTS Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 1545 1574 IPR000672 GO:0004488(InterPro)
Clacu05g0198 1633 PRINTS Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 1373 1395 IPR000672 GO:0004488(InterPro)
Clacu05g0198 1633 PRINTS Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 1586 1602 IPR000672 GO:0004488(InterPro)
Clacu05g0198 1633 PRINTS Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 1603 1621 IPR000672 GO:0004488(InterPro)
Clacu05g0198 1633 PRINTS Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 1449 1470 IPR000672 GO:0004488(InterPro)
Clacu05g0198 1633 PRINTS Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 1414 1441 IPR000672 GO:0004488(InterPro)
Clacu05g0198 1633 PRINTS Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 1496 1516 IPR000672 GO:0004488(InterPro)
Clacu05g0198 1633 NCBIfam monovalent cation:proton antiporter-2 (CPA2) family protein 619 899 IPR004771 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)
Clacu05g0198 1633 MobiDBLite consensus disorder prediction 431 490 - -
Clacu05g0198 1633 FunFam K(+) efflux antiporter 2 chloroplastic 1016 1180 - -
Clacu05g0198 1633 Coils Coil 163 183 - -
Clacu05g0198 1633 MobiDBLite consensus disorder prediction 126 141 - -
Clacu05g0198 1633 Coils Coil 283 338 - -
Clacu05g0198 1633 Gene3D - 1345 1606 - -
Clacu05g0198 1633 MobiDBLite consensus disorder prediction 124 157 - -
Clacu05g0198 1633 FunFam Bifunctional protein FolD 1347 1487 - -
Clacu05g0198 1633 MobiDBLite consensus disorder prediction 431 452 - -
Clacu05g0198 1633 Pfam TrkA-N domain 1021 1134 IPR003148 GO:0006813(InterPro)
Clacu05g0198 1633 MobiDBLite consensus disorder prediction 1218 1238 - -
Clacu05g0198 1633 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 1342 1461 IPR046346 -
Clacu05g0198 1633 Hamap Bifunctional protein FolD [folD]. 1342 1630 IPR000672 GO:0004488(InterPro)
Clacu05g0198 1633 ProSitePatterns Tetrahydrofolate dehydrogenase/cyclohydrolase signature 2. 1607 1615 IPR020867 GO:0003824(InterPro)
Clacu05g0198 1633 Gene3D - 608 995 IPR038770 -
Clacu05g0198 1633 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1017 1159 IPR036291 -
Clacu05g0198 1633 Pfam Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 1463 1629 IPR020631 GO:0004488(InterPro)
Clacu05g0198 1633 Pfam Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain 1345 1460 IPR020630 GO:0004488(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0552 Clacu-Chr4:18802132 Clacu05g0198 Clacu-Chr5:1779180 7.90E-116 dispersed
Clacu05g0198 Clacu-Chr5:1779180 Clacu10g1070 Clacu-Chr10:22765178 8.60E-106 dispersed
Clacu05g0198 Clacu-Chr5:1779180 Clacu08g1856 Clacu-Chr8:27852957 2.90E-37 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0198 K03455 - csv:101213081 1986.85