Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0207 ATGCGTGATTCGATCCCACACTCCTCTACTCCCTTCCGAGCGGTGGATAATTCGCCTCTGCTTGGCCACTCCGTCACCGATGGCCTTTTCCGTTCGCGAGGGTTTATTCGTCGTTCGCCTCAGCCCCTTCGAGGTGCTGTTCGTCTTCTCCGCCGCGCAAGTGGCCGCCAGATGATGCTCCGGGAGCCTTCTGTTCGGGTTCGTGAGACCGCCGCCGAGCAGCTCGAGGAGCGCCAGAGCGATTGGGCGTACTCCAAGCCCATTATTCTTCTGGACCTTCTATGGAATTTGGCCTTCGTCATCATTAGTTTCACTGTTCTAGGGCTCAGCACGAGGGAAAGTCCTTCAGTTCCTCTCAGGTTTTGGATCATTGGATATGCTTTGCAGTGTATAATTCACATGTCCTGTGTTGCTGTTGAGTATAAGCGTCGGCGCTCGACAAGAGAGCCTGTTGGATTGGACCGTACCGGTGGTTGGACGAGCAGCGAGGATTCGAATTCGGTCTCTGGAAGTGATGGAGATGATTATGCGACAGAGGTCACCGTGAATGAAGAAGAATCTAGCAATCTTGTGAAGCATATTGAGTCTGCAAATACAATGTTCTCTTTCATCTGGTGGCTGTTGGGCTTTTATTGGGTAACTGCTGGAGGCCAAGAATTGATAGAGGGTTCACCTCAGTTATACTGGCTTTGTATTACATTCCTTGCTTTTGATGTCGTATTTGTCCTAATTTGCGTTGCAATTGCATGTCTTGTTGGCATTGCTATTTGCTGCTGTCTGCCTTGCATCATTGCCATCTTGTATGCAGTTACCGATCAGGAAGGAGCTACAAAGGAAGAGATCGAGCGCCTACCCAAGTACAAATTTAACAAAACGGGTGATGTTGAGAAAGTGAATGGTGATATTCAGGAATCTGGTGGAGGAATAATGACTAACTGTGACAACGAAGCACCTACAGAGCGTTTTCTTCGCCCTGAAGATTCTGAATGTTGCATCTGCCTCTCTGCTTACGAGAACGGAGCGGAGCTACGAGAACTTCCCTGTAACCACCATTTTCACTGCAACTGCATCGACAAATGGCTGCACATGAATGCCACCTGCCCGCTCTGCAAGTTCAACATCTTGAAGCCAGACAGTTCCAGTAGCGAAGAAATATCATCACAACTCTTCAGGAATTGCACCAGCCGGGAATCGAACCCGGGTCTGTACCGTGGCAGGGTACTATTCTACCACTAG 1236 49.43 MRDSIPHSSTPFRAVDNSPLLGHSVTDGLFRSRGFIRRSPQPLRGAVRLLRRASGRQMMLREPSVRVRETAAEQLEERQSDWAYSKPIILLDLLWNLAFVIISFTVLGLSTRESPSVPLRFWIIGYALQCIIHMSCVAVEYKRRRSTREPVGLDRTGGWTSSEDSNSVSGSDGDDYATEVTVNEEESSNLVKHIESANTMFSFIWWLLGFYWVTAGGQELIEGSPQLYWLCITFLAFDVVFVLICVAIACLVGIAICCCLPCIIAILYAVTDQEGATKEEIERLPKYKFNKTGDVEKVNGDIQESGGGIMTNCDNEAPTERFLRPEDSECCICLSAYENGAELRELPCNHHFHCNCIDKWLHMNATCPLCKFNILKPDSSSSEEISSQLFRNCTSRESNPGLYRGRVLFYH 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1838311 1841077 - ClG42_05g0020700.10 Clacu05g0207 247954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0207 411 Pfam Ring finger domain 329 371 IPR001841 -
Clacu05g0207 411 MobiDBLite consensus disorder prediction 150 176 - -
Clacu05g0207 411 SUPERFAMILY RING/U-box 319 377 - -
Clacu05g0207 411 CDD RING-H2_PA-TM-RING 329 371 - -
Clacu05g0207 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 310 379 IPR013083 -
Clacu05g0207 411 ProSiteProfiles Zinc finger RING-type profile. 330 371 IPR001841 -
Clacu05g0207 411 PANTHER TARGET OF ERK KINASE MPK-1 45 376 - GO:0000325(PANTHER)|GO:0006511(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Clacu05g0207 411 SMART ring_2 330 370 IPR001841 -
Clacu05g0207 411 MobiDBLite consensus disorder prediction 158 176 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0658 Clacu-Chr1:7019727 Clacu05g0207 Clacu-Chr5:1838311 2.30E-88 dispersed
Clacu05g0207 Clacu-Chr5:1838311 Clacu10g0346 Clacu-Chr10:4374986 3.70E-122 dispersed
Clacu05g0207 Clacu-Chr5:1838311 Clacu07g1515 Clacu-Chr7:29760181 9.00E-12 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0207 - - - 0.0