Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0208 ATGAGTTTTCTACCACGATTCCACTCTAGCGGCGCCGGCGGGGGAAACGGTGACGGCGACGGCGACGGAAGTCTTATGGCCGCTGGTGCTATTGCTCAGCCACATCTTATTACTCAATCTTCTTTCACTAAATCAATGTTCTCTTCCCCAACGCTCTCTCTCGCTCTCACGAATATCGATGGGCTCGGCGTCGGGGAGATGGTTGCGGCGGATGTTAGGAGGAGGAGTAGAGAGGAAGAGGCAGCGGAGAGTAGATCTGGGAGCGAGAACATGGACGGTGGTTCCGGCGAGGAAGTGGAGGGCGGCGGTGGTAGGAAGAAGAGGAAGAAACGGTACCACCGTCACAGTGTGGAACAGATCCAAGAACTGGAAGCTATGTTTAAAGAGTGTCCTCATCCTGATGAAAAACAACGATTGGAGCTCAGTAGAAGACTCTCTTTAGAAACAAAACAAGTTAAATTCTGGTTTCAAAATCGTCGAACTCAAATGAAGACACAACTGGAACGCCATGAGAACACATTACTAAGACAAGAGAATGAGAAGCTCCGAACAGAGAATATGGCAATTCGAGAGGCCATGAGGGAACCAATTTGCTCCAACTGCGGTGGACCGGCCATCATCGGAGAAATCTCCATCGAAGAACAGCAACTCAGAATCGAAAATGCCCGATTAAAGGACGAATTGGACCGAGTGTGTGCCCTAGCGGGGAAATTCCTGGGGCGGGCAGCAGTTCCGGTATCGCCGCCATTGGCATCAAGCTCGTGTTTGGAGGAATATGGAGGTGGGATGATGATGATGGAGAGATGCGTGTATTTGGAGATGGGTTTGGCAGCCATGGATGAGATTGTGAAAATGGCTAATGAGGAAGAGCCATTGTGGGTTAGGGAGAAACTGAATGAAGAAGAATATTTGAGAATGTTCAGTGGGAGTTGTTTTGGGGTTAAACACATTAATAATGGGTTTGTTTTTGAGGCTTCTAGACAAACTGCTCTTGTCTTCCTCAACACTTCTGCTCTCCTTGACACTCTCATGGATCCTGACCGGTGGGTGGAGATGTTTCCGAACCTGGTCGCGACGGCAAGCACCACCGACGTAATCTCTGGTGGCATGGGAGGAACCAGGAACGGAGCTCTCCAGCTGATGCATGCAGAGCTTCAAATTCTGTCTCCCATGGTTCCGGTGAGACAATTAAGCTTCCTCCGCTTCTGTAAGCAGCACGCTGAAGGCGTTTGGGTTGTCGTCGATGTCTCCATCGATCCCATTACCGATACTTCTTCCTCTCCGCCGTGCCGGAGACTCCCCTCCGGCTGCCTCATCCACGAGATGCCCAATGGCTACTCCAAGGTTACTTGGGTTGAGCATTCTGAATACGATGAAAGTTACATTCACGAGCTATACCGGCCCCTCATTCGCTCCGGCCTTGGCTTTGGTGCACCACGGTGGATCGCCACGCTCCAACGCCAATCTGAGTGCCTTGCCATCCTCTCCACCCCGATAGACTATTCTGGAATATCAACGAATGGGCGGCGGAGCATGGTGAAGCTAGCGCAGCGGATGACGGTGAATTTTTGTGCAGGAATATGTGGGTCGACTATATACAAATGGAACAAGCTAAACACGAGAAATAACAACGTTGGAGAAGATGTGAGAGTGATGACGAGGAAGAGTGTGGAGGATCCCGGGGAGCCACCGGGGACAGTGCTGAGTGCAGCGACGTCGGTGTGGGTGGCGGAAGCGGCGGAGAGAGTGTTTGAGTTTCTTCGGGATGAGCGGCTGAGGAGTGAGTGGGACATTCTGTCCAACGGCGGCCCCATGCAGGAGATGCTTCATATTCCCAAATCCCAACACCATCACCATCCCAACGCCGTCTCTCTCCTCCGTGCCACCCAGTCTCTAAATCCAAATCAGAGCAGCATGCTAATTCTACAAGAGACTTGCACCGATGCATCGGGATCGCTTGTAGTGTACGCGCCGGTGGACATTCCGGCCATGCAGGCGGTAATGAACGGTGGAGATTCAGCATACGTGGCCTTACTACCGTCGGGGTTCGCGGTGGTTCCGGCGGCGGAGGACGGTGGCGGAGGGAGCCTGTTGACGGTGGCGTTTCAGATACTGGTGAATAGTTTGCCGACGGATAAGCTGACGGTGGAGTCGGTGGAGACGGTGAATAACTTGATTTCGTGTACGGTGCAAAAAATTAAAACCGCTCTCCGGTGTCACGCGCCTTCCACGTGA 2235 52.39 MSFLPRFHSSGAGGGNGDGDGDGSLMAAGAIAQPHLITQSSFTKSMFSSPTLSLALTNIDGLGVGEMVAADVRRRSREEEAAESRSGSENMDGGSGEEVEGGGGRKKRKKRYHRHSVEQIQELEAMFKECPHPDEKQRLELSRRLSLETKQVKFWFQNRRTQMKTQLERHENTLLRQENEKLRTENMAIREAMREPICSNCGGPAIIGEISIEEQQLRIENARLKDELDRVCALAGKFLGRAAVPVSPPLASSSCLEEYGGGMMMMERCVYLEMGLAAMDEIVKMANEEEPLWVREKLNEEEYLRMFSGSCFGVKHINNGFVFEASRQTALVFLNTSALLDTLMDPDRWVEMFPNLVATASTTDVISGGMGGTRNGALQLMHAELQILSPMVPVRQLSFLRFCKQHAEGVWVVVDVSIDPITDTSSSPPCRRLPSGCLIHEMPNGYSKVTWVEHSEYDESYIHELYRPLIRSGLGFGAPRWIATLQRQSECLAILSTPIDYSGISTNGRRSMVKLAQRMTVNFCAGICGSTIYKWNKLNTRNNNVGEDVRVMTRKSVEDPGEPPGTVLSAATSVWVAEAAERVFEFLRDERLRSEWDILSNGGPMQEMLHIPKSQHHHHPNAVSLLRATQSLNPNQSSMLILQETCTDASGSLVVYAPVDIPAMQAVMNGGDSAYVALLPSGFAVVPAAEDGGGGSLLTVAFQILVNSLPTDKLTVESVETVNNLISCTVQKIKTALRCHAPST 744
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1846227 1851098 - ClG42_05g0020800.10 Clacu05g0208 247955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0208 744 MobiDBLite consensus disorder prediction 1 21 - -
Clacu05g0208 744 Coils Coil 207 227 - -
Clacu05g0208 744 MobiDBLite consensus disorder prediction 73 115 - -
Clacu05g0208 744 SUPERFAMILY Bet v1-like 509 727 - -
Clacu05g0208 744 Pfam START domain 276 490 IPR002913 GO:0008289(InterPro)
Clacu05g0208 744 FunFam Homeobox-leucine zipper protein HDG1 96 182 - -
Clacu05g0208 744 SMART START_1 273 491 IPR002913 GO:0008289(InterPro)
Clacu05g0208 744 ProSitePatterns 'Homeobox' domain signature. 141 164 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Clacu05g0208 744 SUPERFAMILY Bet v1-like 268 491 - -
Clacu05g0208 744 SMART HOX_1 107 170 IPR001356 GO:0003677(InterPro)
Clacu05g0208 744 Pfam Homeodomain 109 164 IPR001356 GO:0003677(InterPro)
Clacu05g0208 744 ProSiteProfiles START domain profile. 264 494 IPR002913 GO:0008289(InterPro)
Clacu05g0208 744 Gene3D - 101 183 - -
Clacu05g0208 744 CDD START_ArGLABRA2_like 272 490 - -
Clacu05g0208 744 CDD homeodomain 113 166 IPR001356 GO:0003677(InterPro)
Clacu05g0208 744 SUPERFAMILY Homeodomain-like 97 166 IPR009057 -
Clacu05g0208 744 Coils Coil 160 195 - -
Clacu05g0208 744 ProSiteProfiles 'Homeobox' domain profile. 106 166 IPR001356 GO:0003677(InterPro)
Clacu05g0208 744 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 95 739 IPR042160 -
Clacu05g0208 744 Gene3D - 271 490 IPR023393 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0208 Clacu-Chr5:1846227 Clacu09g1169 Clacu-Chr9:11397695 2.30E-146 dispersed
Clacu05g0208 Clacu-Chr5:1846227 Clacu05g0936 Clacu-Chr5:8281525 1.30E-213 wgd
Clacu05g0208 Clacu-Chr5:1846227 Clacu06g0005 Clacu-Chr6:307312 8.90E-268 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47593 PF01852 START 8.00E-47 CL0209 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0208 K09338 - csv:101222248 937.176