Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0226 ATGAGGCGAATCGAAAACGCGACAAGTCGGCAAGTAACATTCTCGAAGCGTCGGAATGGGCTGCTGAAAAAAGCCTTTGAGCTCTCAGTTCTTTGTGATGCTGAACTTGCTCTCATCATCTTCTCTTCTAGAGGAAAGCTTTATGAATTTTCAAGCTCAAGCATGCAAGCCACGGTGGGGCGATATCTAAGGCATACAAGATCACAAACCCATCATCTTGAACCTTTAGCTCGTCAACATGATTTACAAGCTGTTCAGAATGAGGCTGAAGGTTTGTTGAAGGAGATAGAATCACTTGAAGTTTCAAAGAGGAAATTGTTGGGAGAAGGTCTAGAATCAAGCTCCTATGAAGAACTTCAACAAATAGAACAGCAGCTAGAAAGGAGCTTAGCTCATGTTAGAGCTAGAAAGCACGAGGTTTACAAGGAACAGATTGAACAACTAAGAGAAAAGGAGAAGAACCTGGAAGCTGAGAATGCAAAGCTAGCTAAAAAGTACTTTGTTGAACGTAAGCCTCAACAATCAGCAACTCAGCAGTTAGCAGAAGTTTCAGCTTGTCCAGAAAGTAGTTCCGTTTCAGACGTTGAAACGGAGTTGTTCATTGGCCCTCCCAAGTCCAGGTCCAACTTGAATAATGACGTCAATAAGAAAAAGAGAGCCACAATGTGTGTTGAGGAAGAGAGGGAATTATTGGCTACCCAATGA 705 42.55 MRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAELALIIFSSRGKLYEFSSSSMQATVGRYLRHTRSQTHHLEPLARQHDLQAVQNEAEGLLKEIESLEVSKRKLLGEGLESSSYEELQQIEQQLERSLAHVRARKHEVYKEQIEQLREKEKNLEAENAKLAKKYFVERKPQQSATQQLAEVSACPESSSVSDVETELFIGPPKSRSNLNNDVNKKKRATMCVEEERELLATQ 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1987508 1993669 + ClG42_05g0022600.10 Clacu05g0226 247973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0226 234 Coils Coil 138 165 - -
Clacu05g0226 234 Pfam K-box region 79 165 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Clacu05g0226 234 ProSiteProfiles K-box domain profile. 82 173 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Clacu05g0226 234 SMART madsneu2 1 53 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu05g0226 234 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 3 50 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu05g0226 234 Coils Coil 82 109 - -
Clacu05g0226 234 SUPERFAMILY SRF-like 1 71 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu05g0226 234 Gene3D - 6 76 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu05g0226 234 CDD MADS_MEF2_like 1 69 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Clacu05g0226 234 ProSiteProfiles MADS-box domain profile. 1 54 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu05g0226 234 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 184 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Clacu05g0226 234 PRINTS MADS domain signature 31 52 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu05g0226 234 PRINTS MADS domain signature 16 31 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu05g0226 234 FunFam Agamous-like MADS-box protein AGL13 6 71 - -
Clacu05g0226 234 Coils Coil 116 136 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0226 Clacu-Chr5:1987508 Clacu06g0023 Clacu-Chr6:466375 3.60E-50 dispersed
Clacu01g0328 Clacu-Chr1:3259190 Clacu05g0226 Clacu-Chr5:1987508 3.40E-49 wgd
Clacu05g0226 Clacu-Chr5:1987508 Clacu05g0909 Clacu-Chr5:8046292 1.10E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47596 PF01486 K-box 4.00E-25 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0226 - - - 0.0