Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0240 ATGGAACTGATTATCAATATCTTCACCCTCATTTTCATCGTTCTCTCCCTCTTCTGTCTCTCCTTCTTCATTCTCCTCCTCCGAACGCTCGCCGGAAAGTCCATAACCAACTCCGACTACCCGCCGGTGTACGGCACCATTTACGGCCAGGCTTTCTACTTCAACAACCTGTACGACCATCTGACGGCGGTGGCGAAACGGCATAGAACCTTCCGACTGATCGGGACGGCGTACAGCGAGATATACACGGTCGATCCGAGAAACATCGAACAGATATTGAAGACGAAATTCGACAAGTACTCGAAAGGAAGGAAAGATGAAGAAGTGTGTGGGGATTTGTTCGGAGAGGGAATTTTTTTGGTGGATGGAGAAAAGTGGAAGCAGCAGAGGAAATTGGCGAGCTATGAATTCTCGACGAAGATTGTTAGGGATTTTAGTTGCTCTGTTTTCAGAAGAAATGCGGGTAAACTTGTTGGAATTCTTTGGGAGTTCTCCGCCATGGCTCGGGTCTTCGATGTCCAGGATTTGCTAATGCGATGCTCTTTGGACTCCATTTTCAAAGTTGGGTTCGGCGTCGATTTGAATTGCTTGGAGGAACCAAGCAAAGCAGGGAGCGGGTTCATGAAGGCCTTTGATGATTCTAGCGCTCAGGTTTTTTGGCGCTACATCGATCCTTTCTGGAAATTTAAAAGATTTCTCAACATTGGTTCCGAAGCTTCGTTTAGGAACAACCTCAAGGTAATCGATGCTTTTGTGCACCGGTTGATCAGTGCTAGGAGAAAATTGCTTCACCAACCAAATCTCAATGACAAAGAGGACATACTTTCGAGGTTTCTGATGGAAAGTGAGAAGGATCCGACAAGAATGAATGATCAATATCTGAGAGATATAGTCCTGAATTTCATGTTGGCTGGCAGGGATACAACTGCAGGAACTCTGTCTTGGTTCTTCTATATGCTATGCAAGAACCCTTTGATACAGGAAAAAGTTGCAGAAGAAGTGAGCCAAATTGTTGGGGTTCAAGGGGAAGAAGCTGATATAAATTTGTTCATACAAAACTTAACTGATTCAGCTCTTGATAAAATGCATTATCTCCATGCAGCATTGACAGAGACTCTAAGGCTCTACCCTGCTGTCCCTGTGGATGGAAGGACTGCAGAAATTGATGACATTCTTCCTGATGGCTATAAACTAAGAAAAGGGGATGGAGTATACTACTTGGCCTATTCCATGGGCAGGATGCCCTGCCTTTGGGGAGAAGATGCTGAAGATTTTAAACCAGAGAGATGGCTTGAAAATGGAACTTTTCGACCCGAATCCCCTTTCAAATTCATAGCATTTCATGCGGGTCCTCGAACGTGTTTGGGAAAGGATTTTGCTTATCGACAAATGAAGATAGTATCTGCTACACTGCTTCATTTTTTTCGATTCAAATTAGCCGATCCAACGAGAAATATAACTTATAGGATCATGCTTACCCTTCACATCGATGGAGGTCTCCCACTTCTAGCAATCCCAAGAGCAAGAACATTTGCCTAA 1539 44.25 MELIINIFTLIFIVLSLFCLSFFILLLRTLAGKSITNSDYPPVYGTIYGQAFYFNNLYDHLTAVAKRHRTFRLIGTAYSEIYTVDPRNIEQILKTKFDKYSKGRKDEEVCGDLFGEGIFLVDGEKWKQQRKLASYEFSTKIVRDFSCSVFRRNAGKLVGILWEFSAMARVFDVQDLLMRCSLDSIFKVGFGVDLNCLEEPSKAGSGFMKAFDDSSAQVFWRYIDPFWKFKRFLNIGSEASFRNNLKVIDAFVHRLISARRKLLHQPNLNDKEDILSRFLMESEKDPTRMNDQYLRDIVLNFMLAGRDTTAGTLSWFFYMLCKNPLIQEKVAEEVSQIVGVQGEEADINLFIQNLTDSALDKMHYLHAALTETLRLYPAVPVDGRTAEIDDILPDGYKLRKGDGVYYLAYSMGRMPCLWGEDAEDFKPERWLENGTFRPESPFKFIAFHAGPRTCLGKDFAYRQMKIVSATLLHFFRFKLADPTRNITYRIMLTLHIDGGLPLLAIPRARTFA 512
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 2091815 2097278 + ClG42_05g0024000.10 Clacu05g0240 247987
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0240 512 PRINTS E-class P450 group I signature 366 384 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu05g0240 512 PRINTS E-class P450 group I signature 313 339 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu05g0240 512 PRINTS E-class P450 group I signature 444 454 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu05g0240 512 PRINTS E-class P450 group I signature 454 477 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu05g0240 512 PRINTS E-class P450 group I signature 293 310 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu05g0240 512 SUPERFAMILY Cytochrome P450 46 507 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu05g0240 512 PANTHER CYTOCHROME P450 22 500 - -
Clacu05g0240 512 Gene3D Cytochrome P450 42 504 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu05g0240 512 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 447 456 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Clacu05g0240 512 PRINTS P450 superfamily signature 454 465 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu05g0240 512 PRINTS P450 superfamily signature 367 378 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu05g0240 512 PRINTS P450 superfamily signature 304 321 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu05g0240 512 PRINTS P450 superfamily signature 445 454 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu05g0240 512 CDD CYP86A 69 500 - -
Clacu05g0240 512 Pfam Cytochrome P450 54 483 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0240 Clacu-Chr5:2091815 Clacu11g0946 Clacu-Chr11:9379073 6.40E-108 dispersed
Clacu05g0237 Clacu-Chr5:2036781 Clacu05g0240 Clacu-Chr5:2091815 1.80E-139 proximal
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0240 - - - 0.0