Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0249 ATGGATCGAGCCACCGCCGCACGCGGCCGTCCGCTTCCGCCGCCGTTCATTTCAAGAAACCTCCATCTCAATCCCCACCACCATTTCCTCCACCAAAACTCCGATCAACAGCACAATGGAAATAGTAGCTCCGGCGGCGACGGCGGCCGAGACGGTGAGGTCTTGAGACGACCACGAGGCCGCCCCGCCGGGTCGAAGAACAAGCCGAAGCCGCCGATGATAATCACACGTGATAGCGCCAACGCACTCCGGTGCCACGTCATCGAAATCGCCAACGCCAATGACGTGATCGAAACCCTCACGATTTTCGCACGAAAGCGCCAGCGTGGCATTTGCGTGCTGACCGGCGCCGGAGCGGTCACCAACGTCATCCTCAAGCAGCCGGGGGCCGCGGTCGCCGCCGCTGGACCGGTGATCTCTCTGCCGGGGAGATTTGAGATTCTGTCGTTGTCGGGGTCGTTTCTGCCGCCGCCAGCGCCGGCGGCGGCGTCTGGGCTGACCGTGTACTTGTCCGGCGGGCAGGGGCAGGTGGTAGGAGGAAGCGTGGTGGGCCCACTTTTGAGTTCGGGGCCAGTGGTGATTACGGCTGCTTCATTCGGAAACGCAGCGTACGAGAGGCTACCGGTGGAGGATGACGACGTGGAAGCGGCAACAGCGGCGGATGCCGGAAGTAGTCCGATCAGGTCACCGGAAAACGCCGTGCAACAGCAACAATTTTTGCCGGAACTTCATGGATTGGCGCCGCATCTAATGAACACGTGTCAATTGCCGACGGAACCCTACTGGAGCACAGGTCGCACTCCACCATTTTAG 813 61.38 MDRATAARGRPLPPPFISRNLHLNPHHHFLHQNSDQQHNGNSSSGGDGGRDGEVLRRPRGRPAGSKNKPKPPMIITRDSANALRCHVIEIANANDVIETLTIFARKRQRGICVLTGAGAVTNVILKQPGAAVAAAGPVISLPGRFEILSLSGSFLPPPAPAAASGLTVYLSGGQGQVVGGSVVGPLLSSGPVVITAASFGNAAYERLPVEDDDVEAATAADAGSSPIRSPENAVQQQQFLPELHGLAPHLMNTCQLPTEPYWSTGRTPPF 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2167340 2168152 - ClG42_05g0024900.10 Clacu05g0249 247996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0249 270 MobiDBLite consensus disorder prediction 1 74 - -
Clacu05g0249 270 FunFam AT-hook motif nuclear-localized protein 83 215 - -
Clacu05g0249 270 Gene3D - 83 218 - -
Clacu05g0249 270 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 34 225 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0010228(PANTHER)
Clacu05g0249 270 Pfam Plants and Prokaryotes Conserved (PCC) domain 84 199 IPR005175 -
Clacu05g0249 270 CDD DUF296 84 155 IPR005175 -
Clacu05g0249 270 ProSiteProfiles PPC domain profile profile. 80 220 IPR005175 -
Clacu05g0249 270 SUPERFAMILY AF0104/ALDC/Ptd012-like 80 213 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0249 Clacu-Chr5:2167340 Clacu05g0296 Clacu-Chr5:2562919 7.10E-58 dispersed
Clacu05g0249 Clacu-Chr5:2167340 Clacu05g0256 Clacu-Chr5:2232922 2.30E-16 proximal
Clacu01g0356 Clacu-Chr1:3547641 Clacu05g0249 Clacu-Chr5:2167340 2.20E-68 wgd
Clacu05g0249 Clacu-Chr5:2167340 Clacu06g0033 Clacu-Chr6:547548 5.50E-66 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0249 - - - 0.0