Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0254 ATGGTGCTCTTAAATGGAACCTCAGTTGCATCAGCTACCTTCAGTAAGCTTTGCTTAGCTTTTCCTGAAAGAACGCAAGCAAGCAAGGCTGAGATGAGCTCGAGGCGCAGCCGCGGAAGTTGCCCAGAAGGCAAAGGTGGTGGACCGTGTGGGGCGTGCAAGTTTCTGCGGAGGAAGTGTATGCCAGAGTGTATATTTGCACCCTACTTCGACTCCGAACAAGGTACAACTCATTTTGCAGCTGTGCACAAGGTGTTCGGAGCCAGCAATGTGTCGAAGATGCTTCTACATATTCCTGAACACAAACGGCTCGACGCAGCTATAACTATATGTTACGAGGCACAAGCTCGAGTCAGAGAGCCAGTTTTTGGCTGTGTTGCTCATATCTTTGCCCTCCAACAACAGGCTGCAAGGTTGCAAGTAGAGATCTCGTATTTGCAAGCGCACCTAGCAACATCTGAGCTTCCAAGACCCGCACCCAATCTACAGGCACAGCCACCAGCTCTAGTCAAGAAGCCAACTCTATCCTCAATTGTAAACCTTCCATCAGATTGCCCTTCTTTTCCTGCTGAATCAGATCTTTCTCGACTTCTCGATCCCATCGAGCAAGCTTCACGGCCGAAGTTGCAATCTCCCTTGGAATTGTCCCAAATTGGAAGCAACAGTTTCCCATCCATGAGCAGCATTGATCAACAAATCGTCCAAAAACAACTGGCCTCAATGCGACACATTGGTGCCTCGCTATTTCCGTGCGTCCCTAAAGGAGCCTAA 771 49.29 MVLLNGTSVASATFSKLCLAFPERTQASKAEMSSRRSRGSCPEGKGGGPCGACKFLRRKCMPECIFAPYFDSEQGTTHFAAVHKVFGASNVSKMLLHIPEHKRLDAAITICYEAQARVREPVFGCVAHIFALQQQAARLQVEISYLQAHLATSELPRPAPNLQAQPPALVKKPTLSSIVNLPSDCPSFPAESDLSRLLDPIEQASRPKLQSPLELSQIGSNSFPSMSSIDQQIVQKQLASMRHIGASLFPCVPKGA 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2205438 2209828 - ClG42_05g0025400.10 Clacu05g0254 248001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0254 256 ProSiteProfiles LOB domain profile. 48 150 IPR004883 -
Clacu05g0254 256 PANTHER LOB DOMAIN CONTAINING PROTEIN 45 176 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
Clacu05g0254 256 Pfam Lateral organ boundaries (LOB) domain 49 147 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0254 Clacu-Chr5:2205438 Clacu07g0083 Clacu-Chr7:1242345 1.90E-39 dispersed
Clacu05g0254 Clacu-Chr5:2205438 Clacu06g0035 Clacu-Chr6:567627 4.10E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47598 PF03195 LOB 1.90E-36 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0254 K21994 - csv:101216934 390.193