Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu05g0256 | ATGGAAGAGAGAGAAGCCATAAATGCAGGAGTAACAGTGATAGGAGCCGAAGCTCCGTCGGCTTATCACGTGGCTCCGAGAACCGAGAACCCGCCGGCCGGCGGCGGTTCGCCAACCGTCGCTGCCTCGCCGGTAAGCGTGGGGCTGCCCGGAAGTGGAACCACAGGGAAAAAGAAGCGGGGTAGACCTAGAAAGTACGGCCCGGATGGAACGGTAACCATGGCATTGTCGCCATTGCCGCTTTCTTCCTCAGCTCCGGCAGCCGGTGGCTTCTCCATTACCAAGCGGGGGAAGGGCCGGCTCGGCGGCTCCGAATTCAAACATCACAAGAAAATGGGAATGGAATATATAGGAGAGTGGAATGCGTGTTCTGTCGGTACAAATTTCATGCCTCATATCATCACGGTCAATGCTGGCGAGGATGTCACTATGAAGATCATATCATTTTCCCAACAAGGCCCTCGAGCAATCTGTATTCTTTCTGCTAATGGAGTAATTTCGAATGTCACTCTTCGGCAGCCGGATTCTTCGGGTGGTACTTTAACATATGAGGGCCGTTTTGAAATACTTTCTTTATCTGGATCATTCATGCCTACTGAAAATCAAGGAACAAGAAGCAGGTCGGGTGGGATGAGCGTCTCCTTGGCTAGCCCTGATGGTCGTGTTGTTGGGGGAGGGGTAGCTGGTTTACTCATAGCTGCAAGCCCTGTACAGGTTGTGGTTGGGAGTTTTCTACCAACTAGCCAACAGGAACAGAAGGTAAAGAAACAGAAGCCCGAGTCGGTACCAGCTGCAGCCCCTGTTACAGTCCCGAGCACGGCACTAGCCACGACTGTGCCGGCTTCGAATGCAGATACAGATGACAGTTTAAATGGGAATGGTCTGCAAAATGCCGGGTCGTTAAAACCGGCCAGTTTTGCTCCTTCACCTTTCCAGAGAGACAATTGGGGTACCAATGCTGCTGTGCATTCCTTGCAGGAGCCGAGAAATTCCGCTACCGACATCAATATTTCGCTGCCAGGCTAA | 1026 | 52.24 | MEEREAINAGVTVIGAEAPSAYHVAPRTENPPAGGGSPTVAASPVSVGLPGSGTTGKKKRGRPRKYGPDGTVTMALSPLPLSSSAPAAGGFSITKRGKGRLGGSEFKHHKKMGMEYIGEWNACSVGTNFMPHIITVNAGEDVTMKIISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTENQGTRSRSGGMSVSLASPDGRVVGGGVAGLLIAASPVQVVVGSFLPTSQQEQKVKKQKPESVPAAAPVTVPSTALATTVPASNADTDDSLNGNGLQNAGSLKPASFAPSPFQRDNWGTNAAVHSLQEPRNSATDINISLPG | 341 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 2232922 | 2237073 | + | ClG42_05g0025600.10 | Clacu05g0256 | 248003 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu05g0256 | 341 | MobiDBLite | consensus disorder prediction | 311 | 341 | - | - | |
Clacu05g0256 | 341 | Gene3D | - | 131 | 260 | - | - | |
Clacu05g0256 | 341 | FunFam | AT-hook motif nuclear-localized protein 1-like | 131 | 261 | - | - | |
Clacu05g0256 | 341 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 131 | 244 | IPR005175 | - | |
Clacu05g0256 | 341 | CDD | DUF296 | 131 | 244 | IPR005175 | - | |
Clacu05g0256 | 341 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 129 | 250 | - | - | |
Clacu05g0256 | 341 | MobiDBLite | consensus disorder prediction | 271 | 303 | - | - | |
Clacu05g0256 | 341 | MobiDBLite | consensus disorder prediction | 248 | 341 | - | - | |
Clacu05g0256 | 341 | MobiDBLite | consensus disorder prediction | 18 | 71 | - | - | |
Clacu05g0256 | 341 | ProSiteProfiles | PPC domain profile profile. | 126 | 266 | IPR005175 | - | |
Clacu05g0256 | 341 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 | 13 | 287 | IPR039605 | GO:0003680(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu01g0359 | Clacu-Chr1:3613399 | Clacu05g0256 | Clacu-Chr5:2232922 | 1.10E-89 | dispersed | |
Clacu04g1025 | Clacu-Chr4:24481998 | Clacu05g0256 | Clacu-Chr5:2232922 | 6.10E-16 | dispersed | |
Clacu05g0256 | Clacu-Chr5:2232922 | Clacu11g0191 | Clacu-Chr11:1608732 | 3.20E-79 | dispersed | |
Clacu05g0249 | Clacu-Chr5:2167340 | Clacu05g0256 | Clacu-Chr5:2232922 | 2.30E-16 | proximal |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu05g0256 | - | - | - | 0.0 |