Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0256 ATGGAAGAGAGAGAAGCCATAAATGCAGGAGTAACAGTGATAGGAGCCGAAGCTCCGTCGGCTTATCACGTGGCTCCGAGAACCGAGAACCCGCCGGCCGGCGGCGGTTCGCCAACCGTCGCTGCCTCGCCGGTAAGCGTGGGGCTGCCCGGAAGTGGAACCACAGGGAAAAAGAAGCGGGGTAGACCTAGAAAGTACGGCCCGGATGGAACGGTAACCATGGCATTGTCGCCATTGCCGCTTTCTTCCTCAGCTCCGGCAGCCGGTGGCTTCTCCATTACCAAGCGGGGGAAGGGCCGGCTCGGCGGCTCCGAATTCAAACATCACAAGAAAATGGGAATGGAATATATAGGAGAGTGGAATGCGTGTTCTGTCGGTACAAATTTCATGCCTCATATCATCACGGTCAATGCTGGCGAGGATGTCACTATGAAGATCATATCATTTTCCCAACAAGGCCCTCGAGCAATCTGTATTCTTTCTGCTAATGGAGTAATTTCGAATGTCACTCTTCGGCAGCCGGATTCTTCGGGTGGTACTTTAACATATGAGGGCCGTTTTGAAATACTTTCTTTATCTGGATCATTCATGCCTACTGAAAATCAAGGAACAAGAAGCAGGTCGGGTGGGATGAGCGTCTCCTTGGCTAGCCCTGATGGTCGTGTTGTTGGGGGAGGGGTAGCTGGTTTACTCATAGCTGCAAGCCCTGTACAGGTTGTGGTTGGGAGTTTTCTACCAACTAGCCAACAGGAACAGAAGGTAAAGAAACAGAAGCCCGAGTCGGTACCAGCTGCAGCCCCTGTTACAGTCCCGAGCACGGCACTAGCCACGACTGTGCCGGCTTCGAATGCAGATACAGATGACAGTTTAAATGGGAATGGTCTGCAAAATGCCGGGTCGTTAAAACCGGCCAGTTTTGCTCCTTCACCTTTCCAGAGAGACAATTGGGGTACCAATGCTGCTGTGCATTCCTTGCAGGAGCCGAGAAATTCCGCTACCGACATCAATATTTCGCTGCCAGGCTAA 1026 52.24 MEEREAINAGVTVIGAEAPSAYHVAPRTENPPAGGGSPTVAASPVSVGLPGSGTTGKKKRGRPRKYGPDGTVTMALSPLPLSSSAPAAGGFSITKRGKGRLGGSEFKHHKKMGMEYIGEWNACSVGTNFMPHIITVNAGEDVTMKIISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTENQGTRSRSGGMSVSLASPDGRVVGGGVAGLLIAASPVQVVVGSFLPTSQQEQKVKKQKPESVPAAAPVTVPSTALATTVPASNADTDDSLNGNGLQNAGSLKPASFAPSPFQRDNWGTNAAVHSLQEPRNSATDINISLPG 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2232922 2237073 + ClG42_05g0025600.10 Clacu05g0256 248003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0256 341 MobiDBLite consensus disorder prediction 311 341 - -
Clacu05g0256 341 Gene3D - 131 260 - -
Clacu05g0256 341 FunFam AT-hook motif nuclear-localized protein 1-like 131 261 - -
Clacu05g0256 341 Pfam Plants and Prokaryotes Conserved (PCC) domain 131 244 IPR005175 -
Clacu05g0256 341 CDD DUF296 131 244 IPR005175 -
Clacu05g0256 341 SUPERFAMILY AF0104/ALDC/Ptd012-like 129 250 - -
Clacu05g0256 341 MobiDBLite consensus disorder prediction 271 303 - -
Clacu05g0256 341 MobiDBLite consensus disorder prediction 248 341 - -
Clacu05g0256 341 MobiDBLite consensus disorder prediction 18 71 - -
Clacu05g0256 341 ProSiteProfiles PPC domain profile profile. 126 266 IPR005175 -
Clacu05g0256 341 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 13 287 IPR039605 GO:0003680(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0359 Clacu-Chr1:3613399 Clacu05g0256 Clacu-Chr5:2232922 1.10E-89 dispersed
Clacu04g1025 Clacu-Chr4:24481998 Clacu05g0256 Clacu-Chr5:2232922 6.10E-16 dispersed
Clacu05g0256 Clacu-Chr5:2232922 Clacu11g0191 Clacu-Chr11:1608732 3.20E-79 dispersed
Clacu05g0249 Clacu-Chr5:2167340 Clacu05g0256 Clacu-Chr5:2232922 2.30E-16 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0256 - - - 0.0