Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu05g0258 | ATGGCTCGCAACAGGGAAATCTTGGTGCTGGTGCTGGATGTTGGTCCATCAATGCACTCTATTCTCCCTGAGGTCGAAAAAGTGTGTTCAATGCTAGTAGAGAAGAAGCTAATCTACAACAAATATGATGAAGTAGGCATTGTTCTATTTGGAACTGAAGACACTAAAAATGAGCTGACGGAGGAAGTTGGCGGATATCAGCATGTGGTGGTTTTACAGAACATGAAAGTGGTTGATGGAGATCTTGTTGATGTTCTAAAATGGATCCCTCGAGGGACTGTTTCCGGTGATTTTCTTGACGCCATAATTGTAGGAATGGATATGCTAATAAAGAAATTTGGGGAGACAGAAAAGGGGAAAAAACGTTTATGTCTCATTACAGATGCTTTATTCTCTATAAAAGAACCTTATGAAGGAACTAAAGAGGATCAAGTTACGACCATTGCACAACAGATGACAAAACATGGCATGAGAATGGATAGTGTTGTCGTGAGAGGGAGGTTCAGTCAGAATGCAGATGAGAAAACGATGGATGAAAATGACATTCTTTTAAACATATTTTCAGAGAAAACAAATGCAAAAATGGTGTATGTGGAGAGTCCAACTTCATTATTAGGTGCAATCCGGACTCGAAGTATAGCGCCCGTGACAATTTTTAGAGGTGATCTTGAGATAAGCTCCGTTATCAAGATTAAGGTATGGGTTTACAAGAAAACATCAGAAGAGAAGTTTCCTACTTTGAAAAGATATTCTGATAAAGCACCTCCAACTGATAAATTTGCCACACATGAAATCAAGGTAGATTATGAGTACAAAAGCGTCGAAGAACCTAGTAAGGTAGTGCCGCCAGAACATAGGATTAAAGGTTATCGGTATGGACCTCAAGTGGTTCCTATATCGACTGCTGAATGGGATGCAGTGAAGTTCAAACCAGAAAAGAGCGTGAAGCTACTCGGATTTACAAATGCATCAAATATAATGAGGCACTACTACATGAAAGATGTCAATGTCTTCATTGCCGAACCGAGCAATAAAAGAGCCATTGTTGCGGTTTCTGCTCTAGCAAGAGCAATGAAGGAAATGGACAAAGTGGCAATAGTGCGATGCGTTTGGAGACAAGGACAAGGGAGTGTTGTTGTGGGTGTCTTAACACCCAATATATCCAAGAAGGACGGTATTGCCGATTCGCTATACTTCAATGTACTTCCCTTTGCGGAGGACGTTCGGGAATTCCAATTTCCATCTTTCAGCAATTTGCCAGCATTGATGCAGCCAAGTGAAGAACAGCAACAGGCAGCAGATGACTTGGTTAAGACGCTTGATCTTGCACCAGCTGGACGAGAGGAAATTCTACAACCGGATTTCACACCAAATCCTGTTTTGGAGCGCTTCTATCGTCATCTCGAGTTGAAATCAAAGGATCCAGATGCTGCTGTACCTCCACTTGATGGAACTCTCCAAAAGATTACTGAGCCAGATCCGGACTTGTTTTCTCAAAACAAATATGTTATCGATACATTCCATAGAAAATTTGAACTCAAGGAGAACCCAAAGCTAAAGAAACCGAGAAGGCATTATTTACGTGAAAAAGCATCCGGTTCAAGCGATAAAGAGGATAATGATGAGATTTCTGCTGAAATTGTTGAATCTGTTTCCAACATGCCTATAGTCAAGGTCGAAAAGATTGGAGATTCAACTCCACTTGAAGATTTTGAAGCTATGATGTCTAGAAGAGATAGTCCAGAGTGGATCAGTAAAGCAATCTGTGGCATGAGAAACAAAATATTCGATCTTGTCGAGAACTCCTCTGATGGTGATAACTGTCTGAAAGCTATCGAGTATTTGCGTGCGCTTCGCAAGGGTTGCATTATTGAACAAGAACCGAAGCAATTCAACGATTTCCTCCGTCATCTCCGTAAATTTTGTCCGGAAAATAACCTCCATAGTTTCTGTGAATTCCTTGCATCTCAACAAATTAGTTTGATCTCCAAGGAAGAAGCCGCTGACAGCGTCTCATTCTGTTTCTTCTTCTCGTTGACGATCATGGACTTCCAAGCTCACTCTCTGAAAAGCTCCGACGATTCGTCAACGTCTTCGAAGCTGGTTCTTTATTCTTTCTGGCGGAGCTCCTGCTCGTGGCGTGTTCGCTTTGCGTTGAACCTCAAAGGGCTTTCTTACGAGTACAGAGCAGTAAACCTTGGGAGAAGAGAACAATTAAGTCCAGATTTTGAGCGCCTAAATCCTCTTAAATATGTTCCTGTATTAGTAGATGGTCCTGTGGTAGTTTCAGACTCTTACGCGATTTTGCTGTATCTGGAAGAGAAATATCCACAGAAGGCGCTGCTGCCTGCTGATCTTCGTTTAAAATCTCTTAATCTGCAAGTGGGAAGTATCATCAGCTCAAGCATACAGCCTGTCATAATGATGGGATTGCTGAAAACTATCGAGGAAAAATTTGGTCCAGAAGAGCAACTGCCATGGGCTCAGTCCAATTTAGAAAAAGGTTTCAATGCTCTTGAGAAACTGCTGAAGGATTTTTCTGGTCAATATGCCTTGGGAGATGAAGCTGATGTGTTTCTGGCCCCCCAAATTTCAAATGCTATTGAGAACTTCGACACTGACATGTCTAAGTTTCCTACCTTAGCAAGGATTTATGAATCTTACAAAAAGTTACCAGAATTCCAAGCATCGTCACCAGAAAGGCAGCCTGACGCCCTTCATTAG | 2724 | 41.7 | MARNREILVLVLDVGPSMHSILPEVEKVCSMLVEKKLIYNKYDEVGIVLFGTEDTKNELTEEVGGYQHVVVLQNMKVVDGDLVDVLKWIPRGTVSGDFLDAIIVGMDMLIKKFGETEKGKKRLCLITDALFSIKEPYEGTKEDQVTTIAQQMTKHGMRMDSVVVRGRFSQNADEKTMDENDILLNIFSEKTNAKMVYVESPTSLLGAIRTRSIAPVTIFRGDLEISSVIKIKVWVYKKTSEEKFPTLKRYSDKAPPTDKFATHEIKVDYEYKSVEEPSKVVPPEHRIKGYRYGPQVVPISTAEWDAVKFKPEKSVKLLGFTNASNIMRHYYMKDVNVFIAEPSNKRAIVAVSALARAMKEMDKVAIVRCVWRQGQGSVVVGVLTPNISKKDGIADSLYFNVLPFAEDVREFQFPSFSNLPALMQPSEEQQQAADDLVKTLDLAPAGREEILQPDFTPNPVLERFYRHLELKSKDPDAAVPPLDGTLQKITEPDPDLFSQNKYVIDTFHRKFELKENPKLKKPRRHYLREKASGSSDKEDNDEISAEIVESVSNMPIVKVEKIGDSTPLEDFEAMMSRRDSPEWISKAICGMRNKIFDLVENSSDGDNCLKAIEYLRALRKGCIIEQEPKQFNDFLRHLRKFCPENNLHSFCEFLASQQISLISKEEAADSVSFCFFFSLTIMDFQAHSLKSSDDSSTSSKLVLYSFWRSSCSWRVRFALNLKGLSYEYRAVNLGRREQLSPDFERLNPLKYVPVLVDGPVVVSDSYAILLYLEEKYPQKALLPADLRLKSLNLQVGSIISSSIQPVIMMGLLKTIEEKFGPEEQLPWAQSNLEKGFNALEKLLKDFSGQYALGDEADVFLAPQISNAIENFDTDMSKFPTLARIYESYKKLPEFQASSPERQPDALH | 907 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 2244137 | 2254089 | + | ClG42_05g0025800.10 | Clacu05g0258 | 248005 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu05g0258 | 907 | PANTHER | KU AUTOANTIGEN DNA HELICASE | 3 | 639 | - | GO:0000723(PANTHER)|GO:0003690(PANTHER)|GO:0006303(PANTHER)|GO:0042162(PANTHER)|GO:0043564(PANTHER) | |
Clacu05g0258 | 907 | MobiDBLite | consensus disorder prediction | 522 | 541 | - | - | |
Clacu05g0258 | 907 | Gene3D | - | 216 | 419 | IPR016194 | - | |
Clacu05g0258 | 907 | FunFam | ATP-dependent DNA helicase 2 subunit KU80 | 216 | 418 | - | - | |
Clacu05g0258 | 907 | FunFam | Glutathione S-transferase Z1 | 699 | 783 | - | - | |
Clacu05g0258 | 907 | FunFam | X-ray repair cross-complementing protein 5 | 423 | 519 | - | - | |
Clacu05g0258 | 907 | SFLD | Glutathione Transferase (cytosolic) | 701 | 888 | IPR040079 | - | |
Clacu05g0258 | 907 | Pfam | Ku70/Ku80 beta-barrel domain | 227 | 431 | IPR006164 | GO:0003677(InterPro)|GO:0006303(InterPro) | |
Clacu05g0258 | 907 | Gene3D | - | 423 | 519 | - | - | |
Clacu05g0258 | 907 | Pfam | Glutathione S-transferase, N-terminal domain | 703 | 779 | IPR004045 | - | |
Clacu05g0258 | 907 | FunFam | Maleylacetoacetate isomerase | 784 | 907 | - | - | |
Clacu05g0258 | 907 | Gene3D | - | 534 | 673 | IPR036494 | - | |
Clacu05g0258 | 907 | Pfam | Ku C terminal domain like | 566 | 670 | IPR014893 | - | |
Clacu05g0258 | 907 | ProSiteProfiles | Soluble glutathione S-transferase N-terminal domain profile. | 699 | 780 | IPR004045 | - | |
Clacu05g0258 | 907 | Gene3D | - | 782 | 907 | - | - | |
Clacu05g0258 | 907 | SUPERFAMILY | C-terminal domain of Ku80 | 536 | 670 | IPR036494 | - | |
Clacu05g0258 | 907 | Gene3D | Glutaredoxin | 703 | 779 | - | - | |
Clacu05g0258 | 907 | Pfam | Ku70/Ku80 C-terminal arm | 452 | 537 | IPR005160 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0006303(InterPro) | |
Clacu05g0258 | 907 | CDD | KU80 | 216 | 517 | IPR024193 | GO:0000723(InterPro)|GO:0003677(InterPro)|GO:0003684(InterPro)|GO:0005634(InterPro)|GO:0006303(InterPro)|GO:0006310(InterPro)|GO:0042162(InterPro)|GO:0043564(InterPro) | |
Clacu05g0258 | 907 | SUPERFAMILY | vWA-like | 4 | 232 | IPR036465 | - | |
Clacu05g0258 | 907 | SMART | ku_4 | 278 | 419 | IPR006164 | GO:0003677(InterPro)|GO:0006303(InterPro) | |
Clacu05g0258 | 907 | SUPERFAMILY | Thioredoxin-like | 699 | 783 | IPR036249 | - | |
Clacu05g0258 | 907 | SUPERFAMILY | GST C-terminal domain-like | 781 | 905 | IPR036282 | - | |
Clacu05g0258 | 907 | ProSiteProfiles | Soluble glutathione S-transferase C-terminal domain profile. | 785 | 907 | IPR010987 | - | |
Clacu05g0258 | 907 | SFLD | Main (cytGST) | 701 | 888 | - | - | |
Clacu05g0258 | 907 | Gene3D | von Willebrand factor, type A domain | 1 | 202 | IPR036465 | - | |
Clacu05g0258 | 907 | NCBIfam | maleylacetoacetate isomerase | 703 | 905 | IPR005955 | GO:0003824(InterPro)|GO:0005737(InterPro)|GO:0009072(InterPro) | |
Clacu05g0258 | 907 | CDD | GST_N_Zeta | 702 | 773 | IPR034333 | - | |
Clacu05g0258 | 907 | Pfam | Ku70/Ku80 N-terminal alpha/beta domain | 8 | 158 | IPR005161 | - | |
Clacu05g0258 | 907 | SUPERFAMILY | SPOC domain-like | 215 | 518 | IPR016194 | - | |
Clacu05g0258 | 907 | FunFam | ATP-dependent DNA helicase 2 subunit KU80 | 1 | 198 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu02g0037 | Clacu-Chr2:435417 | Clacu05g0258 | Clacu-Chr5:2244137 | 8.90E-70 | dispersed | |
Clacu05g0258 | Clacu-Chr5:2244137 | Clacu05g0418 | Clacu-Chr5:3560589 | 7.80E-08 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu05g0258 | K10885 | - | csv:101217407 | 1219.91 |