Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0258 ATGGCTCGCAACAGGGAAATCTTGGTGCTGGTGCTGGATGTTGGTCCATCAATGCACTCTATTCTCCCTGAGGTCGAAAAAGTGTGTTCAATGCTAGTAGAGAAGAAGCTAATCTACAACAAATATGATGAAGTAGGCATTGTTCTATTTGGAACTGAAGACACTAAAAATGAGCTGACGGAGGAAGTTGGCGGATATCAGCATGTGGTGGTTTTACAGAACATGAAAGTGGTTGATGGAGATCTTGTTGATGTTCTAAAATGGATCCCTCGAGGGACTGTTTCCGGTGATTTTCTTGACGCCATAATTGTAGGAATGGATATGCTAATAAAGAAATTTGGGGAGACAGAAAAGGGGAAAAAACGTTTATGTCTCATTACAGATGCTTTATTCTCTATAAAAGAACCTTATGAAGGAACTAAAGAGGATCAAGTTACGACCATTGCACAACAGATGACAAAACATGGCATGAGAATGGATAGTGTTGTCGTGAGAGGGAGGTTCAGTCAGAATGCAGATGAGAAAACGATGGATGAAAATGACATTCTTTTAAACATATTTTCAGAGAAAACAAATGCAAAAATGGTGTATGTGGAGAGTCCAACTTCATTATTAGGTGCAATCCGGACTCGAAGTATAGCGCCCGTGACAATTTTTAGAGGTGATCTTGAGATAAGCTCCGTTATCAAGATTAAGGTATGGGTTTACAAGAAAACATCAGAAGAGAAGTTTCCTACTTTGAAAAGATATTCTGATAAAGCACCTCCAACTGATAAATTTGCCACACATGAAATCAAGGTAGATTATGAGTACAAAAGCGTCGAAGAACCTAGTAAGGTAGTGCCGCCAGAACATAGGATTAAAGGTTATCGGTATGGACCTCAAGTGGTTCCTATATCGACTGCTGAATGGGATGCAGTGAAGTTCAAACCAGAAAAGAGCGTGAAGCTACTCGGATTTACAAATGCATCAAATATAATGAGGCACTACTACATGAAAGATGTCAATGTCTTCATTGCCGAACCGAGCAATAAAAGAGCCATTGTTGCGGTTTCTGCTCTAGCAAGAGCAATGAAGGAAATGGACAAAGTGGCAATAGTGCGATGCGTTTGGAGACAAGGACAAGGGAGTGTTGTTGTGGGTGTCTTAACACCCAATATATCCAAGAAGGACGGTATTGCCGATTCGCTATACTTCAATGTACTTCCCTTTGCGGAGGACGTTCGGGAATTCCAATTTCCATCTTTCAGCAATTTGCCAGCATTGATGCAGCCAAGTGAAGAACAGCAACAGGCAGCAGATGACTTGGTTAAGACGCTTGATCTTGCACCAGCTGGACGAGAGGAAATTCTACAACCGGATTTCACACCAAATCCTGTTTTGGAGCGCTTCTATCGTCATCTCGAGTTGAAATCAAAGGATCCAGATGCTGCTGTACCTCCACTTGATGGAACTCTCCAAAAGATTACTGAGCCAGATCCGGACTTGTTTTCTCAAAACAAATATGTTATCGATACATTCCATAGAAAATTTGAACTCAAGGAGAACCCAAAGCTAAAGAAACCGAGAAGGCATTATTTACGTGAAAAAGCATCCGGTTCAAGCGATAAAGAGGATAATGATGAGATTTCTGCTGAAATTGTTGAATCTGTTTCCAACATGCCTATAGTCAAGGTCGAAAAGATTGGAGATTCAACTCCACTTGAAGATTTTGAAGCTATGATGTCTAGAAGAGATAGTCCAGAGTGGATCAGTAAAGCAATCTGTGGCATGAGAAACAAAATATTCGATCTTGTCGAGAACTCCTCTGATGGTGATAACTGTCTGAAAGCTATCGAGTATTTGCGTGCGCTTCGCAAGGGTTGCATTATTGAACAAGAACCGAAGCAATTCAACGATTTCCTCCGTCATCTCCGTAAATTTTGTCCGGAAAATAACCTCCATAGTTTCTGTGAATTCCTTGCATCTCAACAAATTAGTTTGATCTCCAAGGAAGAAGCCGCTGACAGCGTCTCATTCTGTTTCTTCTTCTCGTTGACGATCATGGACTTCCAAGCTCACTCTCTGAAAAGCTCCGACGATTCGTCAACGTCTTCGAAGCTGGTTCTTTATTCTTTCTGGCGGAGCTCCTGCTCGTGGCGTGTTCGCTTTGCGTTGAACCTCAAAGGGCTTTCTTACGAGTACAGAGCAGTAAACCTTGGGAGAAGAGAACAATTAAGTCCAGATTTTGAGCGCCTAAATCCTCTTAAATATGTTCCTGTATTAGTAGATGGTCCTGTGGTAGTTTCAGACTCTTACGCGATTTTGCTGTATCTGGAAGAGAAATATCCACAGAAGGCGCTGCTGCCTGCTGATCTTCGTTTAAAATCTCTTAATCTGCAAGTGGGAAGTATCATCAGCTCAAGCATACAGCCTGTCATAATGATGGGATTGCTGAAAACTATCGAGGAAAAATTTGGTCCAGAAGAGCAACTGCCATGGGCTCAGTCCAATTTAGAAAAAGGTTTCAATGCTCTTGAGAAACTGCTGAAGGATTTTTCTGGTCAATATGCCTTGGGAGATGAAGCTGATGTGTTTCTGGCCCCCCAAATTTCAAATGCTATTGAGAACTTCGACACTGACATGTCTAAGTTTCCTACCTTAGCAAGGATTTATGAATCTTACAAAAAGTTACCAGAATTCCAAGCATCGTCACCAGAAAGGCAGCCTGACGCCCTTCATTAG 2724 41.7 MARNREILVLVLDVGPSMHSILPEVEKVCSMLVEKKLIYNKYDEVGIVLFGTEDTKNELTEEVGGYQHVVVLQNMKVVDGDLVDVLKWIPRGTVSGDFLDAIIVGMDMLIKKFGETEKGKKRLCLITDALFSIKEPYEGTKEDQVTTIAQQMTKHGMRMDSVVVRGRFSQNADEKTMDENDILLNIFSEKTNAKMVYVESPTSLLGAIRTRSIAPVTIFRGDLEISSVIKIKVWVYKKTSEEKFPTLKRYSDKAPPTDKFATHEIKVDYEYKSVEEPSKVVPPEHRIKGYRYGPQVVPISTAEWDAVKFKPEKSVKLLGFTNASNIMRHYYMKDVNVFIAEPSNKRAIVAVSALARAMKEMDKVAIVRCVWRQGQGSVVVGVLTPNISKKDGIADSLYFNVLPFAEDVREFQFPSFSNLPALMQPSEEQQQAADDLVKTLDLAPAGREEILQPDFTPNPVLERFYRHLELKSKDPDAAVPPLDGTLQKITEPDPDLFSQNKYVIDTFHRKFELKENPKLKKPRRHYLREKASGSSDKEDNDEISAEIVESVSNMPIVKVEKIGDSTPLEDFEAMMSRRDSPEWISKAICGMRNKIFDLVENSSDGDNCLKAIEYLRALRKGCIIEQEPKQFNDFLRHLRKFCPENNLHSFCEFLASQQISLISKEEAADSVSFCFFFSLTIMDFQAHSLKSSDDSSTSSKLVLYSFWRSSCSWRVRFALNLKGLSYEYRAVNLGRREQLSPDFERLNPLKYVPVLVDGPVVVSDSYAILLYLEEKYPQKALLPADLRLKSLNLQVGSIISSSIQPVIMMGLLKTIEEKFGPEEQLPWAQSNLEKGFNALEKLLKDFSGQYALGDEADVFLAPQISNAIENFDTDMSKFPTLARIYESYKKLPEFQASSPERQPDALH 907
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2244137 2254089 + ClG42_05g0025800.10 Clacu05g0258 248005

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0258 907 PANTHER KU AUTOANTIGEN DNA HELICASE 3 639 - GO:0000723(PANTHER)|GO:0003690(PANTHER)|GO:0006303(PANTHER)|GO:0042162(PANTHER)|GO:0043564(PANTHER)
Clacu05g0258 907 MobiDBLite consensus disorder prediction 522 541 - -
Clacu05g0258 907 Gene3D - 216 419 IPR016194 -
Clacu05g0258 907 FunFam ATP-dependent DNA helicase 2 subunit KU80 216 418 - -
Clacu05g0258 907 FunFam Glutathione S-transferase Z1 699 783 - -
Clacu05g0258 907 FunFam X-ray repair cross-complementing protein 5 423 519 - -
Clacu05g0258 907 SFLD Glutathione Transferase (cytosolic) 701 888 IPR040079 -
Clacu05g0258 907 Pfam Ku70/Ku80 beta-barrel domain 227 431 IPR006164 GO:0003677(InterPro)|GO:0006303(InterPro)
Clacu05g0258 907 Gene3D - 423 519 - -
Clacu05g0258 907 Pfam Glutathione S-transferase, N-terminal domain 703 779 IPR004045 -
Clacu05g0258 907 FunFam Maleylacetoacetate isomerase 784 907 - -
Clacu05g0258 907 Gene3D - 534 673 IPR036494 -
Clacu05g0258 907 Pfam Ku C terminal domain like 566 670 IPR014893 -
Clacu05g0258 907 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 699 780 IPR004045 -
Clacu05g0258 907 Gene3D - 782 907 - -
Clacu05g0258 907 SUPERFAMILY C-terminal domain of Ku80 536 670 IPR036494 -
Clacu05g0258 907 Gene3D Glutaredoxin 703 779 - -
Clacu05g0258 907 Pfam Ku70/Ku80 C-terminal arm 452 537 IPR005160 GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0006303(InterPro)
Clacu05g0258 907 CDD KU80 216 517 IPR024193 GO:0000723(InterPro)|GO:0003677(InterPro)|GO:0003684(InterPro)|GO:0005634(InterPro)|GO:0006303(InterPro)|GO:0006310(InterPro)|GO:0042162(InterPro)|GO:0043564(InterPro)
Clacu05g0258 907 SUPERFAMILY vWA-like 4 232 IPR036465 -
Clacu05g0258 907 SMART ku_4 278 419 IPR006164 GO:0003677(InterPro)|GO:0006303(InterPro)
Clacu05g0258 907 SUPERFAMILY Thioredoxin-like 699 783 IPR036249 -
Clacu05g0258 907 SUPERFAMILY GST C-terminal domain-like 781 905 IPR036282 -
Clacu05g0258 907 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 785 907 IPR010987 -
Clacu05g0258 907 SFLD Main (cytGST) 701 888 - -
Clacu05g0258 907 Gene3D von Willebrand factor, type A domain 1 202 IPR036465 -
Clacu05g0258 907 NCBIfam maleylacetoacetate isomerase 703 905 IPR005955 GO:0003824(InterPro)|GO:0005737(InterPro)|GO:0009072(InterPro)
Clacu05g0258 907 CDD GST_N_Zeta 702 773 IPR034333 -
Clacu05g0258 907 Pfam Ku70/Ku80 N-terminal alpha/beta domain 8 158 IPR005161 -
Clacu05g0258 907 SUPERFAMILY SPOC domain-like 215 518 IPR016194 -
Clacu05g0258 907 FunFam ATP-dependent DNA helicase 2 subunit KU80 1 198 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0258 K10885 - - csv:101217407 1219.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0037 Clacu-Chr2:435417 Clacu05g0258 Clacu-Chr5:2244137 8.90E-70 dispersed
Clacu05g0258 Clacu-Chr5:2244137 Clacu05g0418 Clacu-Chr5:3560589 7.80E-08 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu09g0599 . 1 210 Glutathione S-transferase Gene Family AT4G02520 60.1 4.8e-65 244.6
Clacu09g0601 . 1 209 Glutathione S-transferase Gene Family AT4G02520 58.0 6.2e-65 244.2
Clacu09g0600 . 1 209 Glutathione S-transferase Gene Family AT4G02520 55.7 1.1e-58 223.4
Clacu09g0599 . 1 211 Glutathione S-transferase Gene Family AT2G02930 61.2 2.5e-66 248.8
Clacu09g0601 . 1 210 Glutathione S-transferase Gene Family AT2G02930 58.2 1.8e-64 242.7
Clacu09g0600 . 1 210 Glutathione S-transferase Gene Family AT2G02930 56.3 1.0e-59 226.9
Clacu09g0601 . 5 206 Glutathione S-transferase Gene Family AT1G02950 53.7 1.5e-60 229.9
Clacu09g0599 . 6 215 Glutathione S-transferase Gene Family AT1G02950 55.0 1.6e-59 226.5
Clacu09g0600 . 5 206 Glutathione S-transferase Gene Family AT1G02950 51.7 3.3e-52 202.2
Clacu09g0599 . 1 211 Glutathione S-transferase Gene Family AT1G02930 58.8 5.2e-64 241.1
Clacu09g0601 . 1 210 Glutathione S-transferase Gene Family AT1G02930 55.7 2.2e-62 235.7
Clacu09g0600 . 1 210 Glutathione S-transferase Gene Family AT1G02930 52.9 1.0e-56 216.9
Clacu09g0599 . 1 211 Glutathione S-transferase Gene Family AT1G02920 60.2 2.1e-65 245.7
Clacu09g0601 . 1 210 Glutathione S-transferase Gene Family AT1G02920 56.2 2.0e-63 239.2
Clacu09g0600 . 1 210 Glutathione S-transferase Gene Family AT1G02920 54.3 1.1e-58 223.4
Clacu09g0601 . 1 215 Glutathione S-transferase Gene Family AT2G47730 58.3 2.6e-68 255.8
Clacu09g0599 . 4 215 Glutathione S-transferase Gene Family AT2G47730 58.7 7.0e-66 247.7
Clacu09g0600 . 1 214 Glutathione S-transferase Gene Family AT2G47730 55.8 1.4e-61 233.4
Clacu09g0602 . 1 214 Glutathione S-transferase Gene Family AT3G62760 57.5 4.9e-73 271.2
Clacu09g0599 . 20 215 Glutathione S-transferase Gene Family AT1G49860 51.5 2.2e-48 189.5
Clacu04g0811 . 3 214 Glutathione S-transferase Gene Family AT3G09270 53.8 5.6e-64 241.1
Clacu04g0814 . 3 216 Glutathione S-transferase Gene Family AT3G09270 53.0 8.0e-63 237.3
Clacu04g0803 . 224 421 Glutathione S-transferase Gene Family AT3G09270 52.8 6.0e-58 221.1
Clacu05g0286 . 2 213 Glutathione S-transferase Gene Family AT3G09270 50.9 1.3e-57 219.9
Clacu04g0815 . 3 212 Glutathione S-transferase Gene Family AT3G09270 53.8 3.3e-56 215.3
Clacu07g1056 . 1 214 Glutathione S-transferase Gene Family AT1G78380 71.0 5.4e-88 320.9
Clacu07g1058 . 1 216 Glutathione S-transferase Gene Family AT1G78380 70.4 1.2e-87 319.7
Clacu07g1057 . 1 217 Glutathione S-transferase Gene Family AT1G78380 66.8 9.9e-82 300.1
Clacu01g0854 . 4 203 Glutathione S-transferase Gene Family AT1G78380 59.0 2.4e-64 242.3
Clacu07g1059 . 1 201 Glutathione S-transferase Gene Family AT1G78380 51.7 2.7e-55 212.2
Clacu07g1056 . 7 214 Glutathione S-transferase Gene Family AT1G78370 65.4 5.4e-80 294.3
Clacu07g1058 . 7 214 Glutathione S-transferase Gene Family AT1G78370 62.0 1.5e-74 276.2
Clacu07g1057 . 7 216 Glutathione S-transferase Gene Family AT1G78370 56.2 3.3e-69 258.5
Clacu01g0854 . 7 203 Glutathione S-transferase Gene Family AT1G78370 56.3 9.5e-61 230.3
Clacu07g1056 . 1 214 Glutathione S-transferase Gene Family AT1G78340 64.5 2.4e-80 295.4
Clacu07g1058 . 1 216 Glutathione S-transferase Gene Family AT1G78340 64.4 9.2e-80 293.5
Clacu07g1057 . 1 217 Glutathione S-transferase Gene Family AT1G78340 59.4 7.5e-74 273.9
Clacu01g0854 . 4 203 Glutathione S-transferase Gene Family AT1G78340 55.5 8.6e-62 233.8
Clacu07g1059 . 1 199 Glutathione S-transferase Gene Family AT1G78340 50.3 1.9e-53 206.1
Clacu07g1056 . 1 216 Glutathione S-transferase Gene Family AT1G78320 53.7 6.5e-61 230.7
Clacu07g1056 . 1 218 Glutathione S-transferase Gene Family AT1G17180 70.2 9.0e-91 330.1
Clacu07g1058 . 1 219 Glutathione S-transferase Gene Family AT1G17180 63.9 2.4e-83 305.4
Clacu07g1057 . 1 220 Glutathione S-transferase Gene Family AT1G17180 60.9 1.2e-79 293.1
Clacu01g0854 . 4 203 Glutathione S-transferase Gene Family AT1G17180 57.0 7.9e-63 237.3
Clacu07g1059 . 1 195 Glutathione S-transferase Gene Family AT1G17180 51.8 1.4e-56 216.5
Clacu07g1056 . 2 217 Glutathione S-transferase Gene Family AT1G17190 58.8 1.8e-75 279.3
Clacu07g1058 . 2 217 Glutathione S-transferase Gene Family AT1G17190 56.9 1.1e-72 270.0
Clacu07g1057 . 2 218 Glutathione S-transferase Gene Family AT1G17190 53.5 4.8e-68 254.6
Clacu07g1059 . 1 185 Glutathione S-transferase Gene Family AT1G17190 53.5 1.2e-50 196.8
Clacu07g1056 . 3 214 Glutathione S-transferase Gene Family AT3G43800 59.3 1.1e-72 270.0
Clacu07g1058 . 3 214 Glutathione S-transferase Gene Family AT3G43800 56.9 6.9e-70 260.8
Clacu07g1057 . 3 212 Glutathione S-transferase Gene Family AT3G43800 51.6 9.6e-64 240.4
Clacu01g0854 . 1 203 Glutathione S-transferase Gene Family AT3G43800 51.0 3.0e-57 218.8
Clacu07g1056 . 1 218 Glutathione S-transferase Gene Family AT1G53680 58.3 6.1e-71 264.2
Clacu07g1058 . 2 219 Glutathione S-transferase Gene Family AT1G53680 56.4 6.3e-68 254.2
Clacu01g0854 . 1 201 Glutathione S-transferase Gene Family AT1G53680 56.6 4.1e-59 224.9
Clacu07g1059 . 1 201 Glutathione S-transferase Gene Family AT1G53680 51.5 1.3e-52 203.4
Clacu02g0037 . 55 221 Glutathione S-transferase Gene Family AT2G02390 68.3 9.9e-62 233.4
Clacu05g0258 . 742 905 Glutathione S-transferase Gene Family AT2G02390 51.5 6.5e-45 177.6
Clacu02g0037 . 12 224 Glutathione S-transferase Gene Family AT2G02380 64.3 1.3e-76 283.1
Clacu05g0258 . 699 904 Glutathione S-transferase Gene Family AT2G02380 53.1 1.3e-57 219.9
Clacu07g0801 . 101 337 Glutathione S-transferase Gene Family AT5G41210 67.9 3.1e-92 335.1
Clacu07g0801 . 101 337 Glutathione S-transferase Gene Family AT5G41240 66.2 3.5e-89 326.2
Clacu10g2039 . 1 235 Glutathione S-transferase Gene Family AT5G02780 67.4 6.9e-89 323.9
Clacu10g2038 . 13 232 Glutathione S-transferase Gene Family AT5G02780 68.9 2.5e-83 305.4
Clacu02g1410 . 75 294 Glutathione S-transferase Gene Family AT5G02780 65.8 3.4e-80 295.0
Clacu02g1410 . 29 292 Glutathione S-transferase Gene Family AT3G55040 61.1 1.1e-85 313.5
Clacu10g2039 . 6 233 Glutathione S-transferase Gene Family AT3G55040 61.0 1.0e-78 290.4
Clacu10g2038 . 3 230 Glutathione S-transferase Gene Family AT3G55040 59.0 1.2e-77 287.0
Clacu10g2039 . 1 235 Glutathione S-transferase Gene Family AT5G02790 69.4 1.4e-94 342.8
Clacu10g2038 . 7 232 Glutathione S-transferase Gene Family AT5G02790 69.2 1.8e-89 325.9
Clacu02g1410 . 67 294 Glutathione S-transferase Gene Family AT5G02790 62.9 3.6e-82 301.6
Clacu02g1383 . 3 230 Glutathione S-transferase Gene Family AT1G19570 61.1 1.4e-77 286.2
Clacu05g1301 . 65 272 Glutathione S-transferase Gene Family AT1G19570 58.9 3.1e-72 268.5
Clacu02g1383 . 3 229 Glutathione S-transferase Gene Family AT1G75270 65.4 1.7e-83 305.8
Clacu05g1301 . 65 272 Glutathione S-transferase Gene Family AT1G75270 62.2 3.9e-75 278.1
Clacu05g1301 . 9 274 Glutathione S-transferase Gene Family AT5G16710 68.3 7.0e-103 370.5
Clacu02g1383 . 5 228 Glutathione S-transferase Gene Family AT5G16710 54.9 5.1e-69 258.1
Clacu11g1781 . 1 267 Glutathione S-transferase Gene Family AT1G77290 70.0 2.7e-110 395.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010606 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 32