Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0258 ATGGCTCGCAACAGGGAAATCTTGGTGCTGGTGCTGGATGTTGGTCCATCAATGCACTCTATTCTCCCTGAGGTCGAAAAAGTGTGTTCAATGCTAGTAGAGAAGAAGCTAATCTACAACAAATATGATGAAGTAGGCATTGTTCTATTTGGAACTGAAGACACTAAAAATGAGCTGACGGAGGAAGTTGGCGGATATCAGCATGTGGTGGTTTTACAGAACATGAAAGTGGTTGATGGAGATCTTGTTGATGTTCTAAAATGGATCCCTCGAGGGACTGTTTCCGGTGATTTTCTTGACGCCATAATTGTAGGAATGGATATGCTAATAAAGAAATTTGGGGAGACAGAAAAGGGGAAAAAACGTTTATGTCTCATTACAGATGCTTTATTCTCTATAAAAGAACCTTATGAAGGAACTAAAGAGGATCAAGTTACGACCATTGCACAACAGATGACAAAACATGGCATGAGAATGGATAGTGTTGTCGTGAGAGGGAGGTTCAGTCAGAATGCAGATGAGAAAACGATGGATGAAAATGACATTCTTTTAAACATATTTTCAGAGAAAACAAATGCAAAAATGGTGTATGTGGAGAGTCCAACTTCATTATTAGGTGCAATCCGGACTCGAAGTATAGCGCCCGTGACAATTTTTAGAGGTGATCTTGAGATAAGCTCCGTTATCAAGATTAAGGTATGGGTTTACAAGAAAACATCAGAAGAGAAGTTTCCTACTTTGAAAAGATATTCTGATAAAGCACCTCCAACTGATAAATTTGCCACACATGAAATCAAGGTAGATTATGAGTACAAAAGCGTCGAAGAACCTAGTAAGGTAGTGCCGCCAGAACATAGGATTAAAGGTTATCGGTATGGACCTCAAGTGGTTCCTATATCGACTGCTGAATGGGATGCAGTGAAGTTCAAACCAGAAAAGAGCGTGAAGCTACTCGGATTTACAAATGCATCAAATATAATGAGGCACTACTACATGAAAGATGTCAATGTCTTCATTGCCGAACCGAGCAATAAAAGAGCCATTGTTGCGGTTTCTGCTCTAGCAAGAGCAATGAAGGAAATGGACAAAGTGGCAATAGTGCGATGCGTTTGGAGACAAGGACAAGGGAGTGTTGTTGTGGGTGTCTTAACACCCAATATATCCAAGAAGGACGGTATTGCCGATTCGCTATACTTCAATGTACTTCCCTTTGCGGAGGACGTTCGGGAATTCCAATTTCCATCTTTCAGCAATTTGCCAGCATTGATGCAGCCAAGTGAAGAACAGCAACAGGCAGCAGATGACTTGGTTAAGACGCTTGATCTTGCACCAGCTGGACGAGAGGAAATTCTACAACCGGATTTCACACCAAATCCTGTTTTGGAGCGCTTCTATCGTCATCTCGAGTTGAAATCAAAGGATCCAGATGCTGCTGTACCTCCACTTGATGGAACTCTCCAAAAGATTACTGAGCCAGATCCGGACTTGTTTTCTCAAAACAAATATGTTATCGATACATTCCATAGAAAATTTGAACTCAAGGAGAACCCAAAGCTAAAGAAACCGAGAAGGCATTATTTACGTGAAAAAGCATCCGGTTCAAGCGATAAAGAGGATAATGATGAGATTTCTGCTGAAATTGTTGAATCTGTTTCCAACATGCCTATAGTCAAGGTCGAAAAGATTGGAGATTCAACTCCACTTGAAGATTTTGAAGCTATGATGTCTAGAAGAGATAGTCCAGAGTGGATCAGTAAAGCAATCTGTGGCATGAGAAACAAAATATTCGATCTTGTCGAGAACTCCTCTGATGGTGATAACTGTCTGAAAGCTATCGAGTATTTGCGTGCGCTTCGCAAGGGTTGCATTATTGAACAAGAACCGAAGCAATTCAACGATTTCCTCCGTCATCTCCGTAAATTTTGTCCGGAAAATAACCTCCATAGTTTCTGTGAATTCCTTGCATCTCAACAAATTAGTTTGATCTCCAAGGAAGAAGCCGCTGACAGCGTCTCATTCTGTTTCTTCTTCTCGTTGACGATCATGGACTTCCAAGCTCACTCTCTGAAAAGCTCCGACGATTCGTCAACGTCTTCGAAGCTGGTTCTTTATTCTTTCTGGCGGAGCTCCTGCTCGTGGCGTGTTCGCTTTGCGTTGAACCTCAAAGGGCTTTCTTACGAGTACAGAGCAGTAAACCTTGGGAGAAGAGAACAATTAAGTCCAGATTTTGAGCGCCTAAATCCTCTTAAATATGTTCCTGTATTAGTAGATGGTCCTGTGGTAGTTTCAGACTCTTACGCGATTTTGCTGTATCTGGAAGAGAAATATCCACAGAAGGCGCTGCTGCCTGCTGATCTTCGTTTAAAATCTCTTAATCTGCAAGTGGGAAGTATCATCAGCTCAAGCATACAGCCTGTCATAATGATGGGATTGCTGAAAACTATCGAGGAAAAATTTGGTCCAGAAGAGCAACTGCCATGGGCTCAGTCCAATTTAGAAAAAGGTTTCAATGCTCTTGAGAAACTGCTGAAGGATTTTTCTGGTCAATATGCCTTGGGAGATGAAGCTGATGTGTTTCTGGCCCCCCAAATTTCAAATGCTATTGAGAACTTCGACACTGACATGTCTAAGTTTCCTACCTTAGCAAGGATTTATGAATCTTACAAAAAGTTACCAGAATTCCAAGCATCGTCACCAGAAAGGCAGCCTGACGCCCTTCATTAG 2724 41.7 MARNREILVLVLDVGPSMHSILPEVEKVCSMLVEKKLIYNKYDEVGIVLFGTEDTKNELTEEVGGYQHVVVLQNMKVVDGDLVDVLKWIPRGTVSGDFLDAIIVGMDMLIKKFGETEKGKKRLCLITDALFSIKEPYEGTKEDQVTTIAQQMTKHGMRMDSVVVRGRFSQNADEKTMDENDILLNIFSEKTNAKMVYVESPTSLLGAIRTRSIAPVTIFRGDLEISSVIKIKVWVYKKTSEEKFPTLKRYSDKAPPTDKFATHEIKVDYEYKSVEEPSKVVPPEHRIKGYRYGPQVVPISTAEWDAVKFKPEKSVKLLGFTNASNIMRHYYMKDVNVFIAEPSNKRAIVAVSALARAMKEMDKVAIVRCVWRQGQGSVVVGVLTPNISKKDGIADSLYFNVLPFAEDVREFQFPSFSNLPALMQPSEEQQQAADDLVKTLDLAPAGREEILQPDFTPNPVLERFYRHLELKSKDPDAAVPPLDGTLQKITEPDPDLFSQNKYVIDTFHRKFELKENPKLKKPRRHYLREKASGSSDKEDNDEISAEIVESVSNMPIVKVEKIGDSTPLEDFEAMMSRRDSPEWISKAICGMRNKIFDLVENSSDGDNCLKAIEYLRALRKGCIIEQEPKQFNDFLRHLRKFCPENNLHSFCEFLASQQISLISKEEAADSVSFCFFFSLTIMDFQAHSLKSSDDSSTSSKLVLYSFWRSSCSWRVRFALNLKGLSYEYRAVNLGRREQLSPDFERLNPLKYVPVLVDGPVVVSDSYAILLYLEEKYPQKALLPADLRLKSLNLQVGSIISSSIQPVIMMGLLKTIEEKFGPEEQLPWAQSNLEKGFNALEKLLKDFSGQYALGDEADVFLAPQISNAIENFDTDMSKFPTLARIYESYKKLPEFQASSPERQPDALH 907
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2244137 2254089 + ClG42_05g0025800.10 Clacu05g0258 248005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0258 907 PANTHER KU AUTOANTIGEN DNA HELICASE 3 639 - GO:0000723(PANTHER)|GO:0003690(PANTHER)|GO:0006303(PANTHER)|GO:0042162(PANTHER)|GO:0043564(PANTHER)
Clacu05g0258 907 MobiDBLite consensus disorder prediction 522 541 - -
Clacu05g0258 907 Gene3D - 216 419 IPR016194 -
Clacu05g0258 907 FunFam ATP-dependent DNA helicase 2 subunit KU80 216 418 - -
Clacu05g0258 907 FunFam Glutathione S-transferase Z1 699 783 - -
Clacu05g0258 907 FunFam X-ray repair cross-complementing protein 5 423 519 - -
Clacu05g0258 907 SFLD Glutathione Transferase (cytosolic) 701 888 IPR040079 -
Clacu05g0258 907 Pfam Ku70/Ku80 beta-barrel domain 227 431 IPR006164 GO:0003677(InterPro)|GO:0006303(InterPro)
Clacu05g0258 907 Gene3D - 423 519 - -
Clacu05g0258 907 Pfam Glutathione S-transferase, N-terminal domain 703 779 IPR004045 -
Clacu05g0258 907 FunFam Maleylacetoacetate isomerase 784 907 - -
Clacu05g0258 907 Gene3D - 534 673 IPR036494 -
Clacu05g0258 907 Pfam Ku C terminal domain like 566 670 IPR014893 -
Clacu05g0258 907 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 699 780 IPR004045 -
Clacu05g0258 907 Gene3D - 782 907 - -
Clacu05g0258 907 SUPERFAMILY C-terminal domain of Ku80 536 670 IPR036494 -
Clacu05g0258 907 Gene3D Glutaredoxin 703 779 - -
Clacu05g0258 907 Pfam Ku70/Ku80 C-terminal arm 452 537 IPR005160 GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0006303(InterPro)
Clacu05g0258 907 CDD KU80 216 517 IPR024193 GO:0000723(InterPro)|GO:0003677(InterPro)|GO:0003684(InterPro)|GO:0005634(InterPro)|GO:0006303(InterPro)|GO:0006310(InterPro)|GO:0042162(InterPro)|GO:0043564(InterPro)
Clacu05g0258 907 SUPERFAMILY vWA-like 4 232 IPR036465 -
Clacu05g0258 907 SMART ku_4 278 419 IPR006164 GO:0003677(InterPro)|GO:0006303(InterPro)
Clacu05g0258 907 SUPERFAMILY Thioredoxin-like 699 783 IPR036249 -
Clacu05g0258 907 SUPERFAMILY GST C-terminal domain-like 781 905 IPR036282 -
Clacu05g0258 907 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 785 907 IPR010987 -
Clacu05g0258 907 SFLD Main (cytGST) 701 888 - -
Clacu05g0258 907 Gene3D von Willebrand factor, type A domain 1 202 IPR036465 -
Clacu05g0258 907 NCBIfam maleylacetoacetate isomerase 703 905 IPR005955 GO:0003824(InterPro)|GO:0005737(InterPro)|GO:0009072(InterPro)
Clacu05g0258 907 CDD GST_N_Zeta 702 773 IPR034333 -
Clacu05g0258 907 Pfam Ku70/Ku80 N-terminal alpha/beta domain 8 158 IPR005161 -
Clacu05g0258 907 SUPERFAMILY SPOC domain-like 215 518 IPR016194 -
Clacu05g0258 907 FunFam ATP-dependent DNA helicase 2 subunit KU80 1 198 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0037 Clacu-Chr2:435417 Clacu05g0258 Clacu-Chr5:2244137 8.90E-70 dispersed
Clacu05g0258 Clacu-Chr5:2244137 Clacu05g0418 Clacu-Chr5:3560589 7.80E-08 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0258 K10885 - csv:101217407 1219.91