Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0274 ATGCCCTTCCCCGTCGCTACCTTTCTACTCCTCTTCTTACCCCTGGTAGTGGTGGCTTCCTCTATTTCTTCGTTGCCCGAGCTGGACCCGGTTCGGTTCGCCCAGACCGGGGTTGCGGAAGCCAGAACCGAAATAGGTAAGTTAAAACGACGTCGATTTGGGCTTGGCGATTGCTCTACGCTCTACGAGGAGGCGGACTGGCGGCTCGCCGGGATGTTGGTTGGAGAGAATTATACGGCGGAAGATGCTCGGGCGTGGCTTAGCGCCGCCGTGGCTAACCATCGGAGTTGTTTGGATGGCTTGGAAGAGGTTGGTGCCGCGACGGCGGTGGAATATGGGAATAACTTGACCGTGATGCTCACCGGAGCTCTGCATTTATACGACAAGATTGCTGCTGTGGAGAAGCGGAAGGGAAGGGAAGTAGTGAAGAAACAGAAATGGAGAGAAAACAGAGGAATGGACTTGGCGAAGTGGAATCCGGTGACCTCGAAGGCAGACTACGTGGTGGCGAAAGACGGGTCCGGCACCCACACAACCATAAACGGGGCGGTGGCGACTCTGGCGAGGACTGGACGGAGACGGCGGGGGGAGAGAATTGTGATATACGTGAAAGCCGGTGTTTACAAGGAAAATGTGGAAATTGGAATACAGTTGAAGAACGTCATGGTTGTTGGTGACGGCGCAGACAAAACCATCGTCACCGGTAGCCGCAACGTGCCCGACGGTGCCACCACTTATAACTCAGCTACATTTGGTGTTTCCGGCGACGGATTTTGGGCGAGGGACATAACTTTCGAGAACACAGCCGGACCGGAAAAGCAACAGGCGGTGGCGCTACGGCTGAATTCAGACCTTGCCGTCGTATATCGGTGCGCAATAAAAGGTTATCAGGACACGCTCTTCCTCCACTCCCTCCGCCAATTCTACCGCGACTGCCAAATCTACGGCACCATCGATTTCATTTTCGGGAACTCCGCCGCCGTCCTCCAGAACTGCGAAATCTTCGTCCGACGACCGATTCGCCACCAGGCTAACATGATCACCGCCCAAGGTCGCGACGATCCGGCCGAGCCCACCGGAATTTCCATCCTCAACTCCAGAGTCCAGCCGGCGCCGGATTTCGCACCCGTAAAGGCTCAATATAGAACCTACCTCGGCCGCCCGTGGAAGCGGTTTTCGAGGACGGTGGTTATGGCGACAGATTTGGACGGATTGATCGATCCGAAAGGGTGGGGAGAATGGAGGGGGGATTTTGCGATTTCGACTTTGTTTTATGCAGAGTTTAAGAACAGGGGCGGCGGTTCTTCGACGAGATTTAGGGTTAATTGGCCGGGGTTTCACGTCCTCCATAGCGCGGAGGAGGCGCGACCTTTCACGGTGGCTGAGTTTCTTCACGGCGGCGCTTGGATTCCGGCCACCGGCGTACCCTTCGAGGCGGGCGTTTGA 1446 56.15 MPFPVATFLLLFLPLVVVASSISSLPELDPVRFAQTGVAEARTEIGKLKRRRFGLGDCSTLYEEADWRLAGMLVGENYTAEDARAWLSAAVANHRSCLDGLEEVGAATAVEYGNNLTVMLTGALHLYDKIAAVEKRKGREVVKKQKWRENRGMDLAKWNPVTSKADYVVAKDGSGTHTTINGAVATLARTGRRRRGERIVIYVKAGVYKENVEIGIQLKNVMVVGDGADKTIVTGSRNVPDGATTYNSATFGVSGDGFWARDITFENTAGPEKQQAVALRLNSDLAVVYRCAIKGYQDTLFLHSLRQFYRDCQIYGTIDFIFGNSAAVLQNCEIFVRRPIRHQANMITAQGRDDPAEPTGISILNSRVQPAPDFAPVKAQYRTYLGRPWKRFSRTVVMATDLDGLIDPKGWGEWRGDFAISTLFYAEFKNRGGGSSTRFRVNWPGFHVLHSAEEARPFTVAEFLHGGAWIPATGVPFEAGV 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2380652 2383947 - ClG42_05g0027400.10 Clacu05g0274 248021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0274 481 Pfam Pectinesterase 167 466 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Clacu05g0274 481 Pfam Plant invertase/pectin methylesterase inhibitor 35 107 IPR006501 GO:0004857(InterPro)
Clacu05g0274 481 Gene3D - 160 481 IPR012334 -
Clacu05g0274 481 SUPERFAMILY Pectin lyase-like 162 479 IPR011050 -
Clacu05g0274 481 ProSitePatterns Pectinesterase signature 2. 314 323 IPR033131 -
Clacu05g0274 481 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 50 114 IPR035513 -
Clacu05g0274 481 PANTHER PECTINESTERASE 51 472 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Clacu05g0274 481 Gene3D Invertase/pectin methylesterase inhibitor family protein 30 130 IPR035513 -
Clacu05g0274 481 FunFam Pectinesterase 160 481 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0274 Clacu-Chr5:2380652 Clacu05g0865 Clacu-Chr5:7575506 9.30E-109 dispersed
Clacu05g0274 Clacu-Chr5:2380652 Clacu05g0275 Clacu-Chr5:2395825 1.60E-100 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0274 K01051 - csv:101217635 795.423