Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0275 ATGGGAAGGCATTCGACCACCTTTGTTGTTGTTCTTATTGTTCTTCTTATTCCGACCGAGATTTTTTGTTATTCCGAAAAAGAAATAAAACGTTGGTGTAGCCAAACGCCATATCCAGCTCCATGTGAGGAATTTCTCAAAACCAAAGCCTTAACAAACAAATCTCCAATAGTCAATAAATCCCATTTCTTTGAAATCTTAGTCCAAACGGCACTCGAACGTGCCGTTTCGGCCCATAAAAACGCTCTTTCTCTCGGCCCAAAATGCCGAAATGCCAAAGAAAAAACCGCATGGACTGATTGTGTTGACCTCTACGACCAAATCATAACCCGCCTCAACCGAACCGCCGACCGCTGCTCCCCGGTTGACGCACAAACCTGGCTCAGCGCCGCTCTCACCGCCCTCGAAACCTGCCGGACCGGGTTCGAGGAGCTCGGGGTTTCGGCTTTCGGCTACTCATTGACGGCCAATAATGTTTCAAAGCTGATTAGCGATGGGTTGTCGGTGAATAAACCGCCGTCGCCGGAGGGGTATGAACCGCAGACCATGGCGGAGGGGTTCCCGACGTGGGTTAGGCCCGGTGACCGGAAATTGCTGCAGGCGGGGTCTCCGAAGGCGAACGTCGTGGTGGCGAAGGATGGGTCAGGGAATTTTCAGACGGTGAAGGAGGCGGTGGCCGCCGCGAAGGGCGGCGGGAGATTTGTGATATATGTGAAGGCGGGGGTTTATAGCGAGAATGTGGAGATTAAGGCTAAGAATGTCATGTTAATCGGAGATGGAATCGGAAAAACTGTCATCACCGGAAGTAGAAGTGTCGGCGGAGGTTCCACCACGTTCAGATCCGCCACCGTTGCCGTTGATGGAGACGGATTCATCGCGCGAGACATAACTTTCAGAAACACAGCCGGGGCAAAGAACCACCAGGCGGTGGCGCTCCGATCGGGTTCCGATCTCTCCGTCTTCTACCGTTGCGGCTTCGAAGGCTTTCAAGACACTCTCTACGTTTACGCCGAACGCCAATTCTACAAACAATGCGACATTTACGGCACCGTCGATTTCATCTTCGGCAACGCCGCCGTCGTAATCCAAGATTCCAACATCATCGCTCGTGATCCTCCGAACAAAACCATCACACTCACCGCCCAAGGCCGCACCGATCCGAATCAGAACACCGGAATCTCCATCCACAATTGCAGAGTCACCTCCGCCGGCGGCCTCAGCGGCGTCAAGGCCTATTTAGGCCGCCCGTGGAAGCAGTACTCGCGGACGGTTTTTATGAAATCGTCGATCGGAGGATTCATCAGTCCGGCGGGGTGGATGGAGTGGAGCGGTAATTTTGCCCTAAATACGCTGTATTACGGCGAGTATATGAATACCGGTCCGGGAGCGTCGACGGCGAACCGAGTGAAATGGAAGGGTTATCATGTGATAACCAGTGCGGCGGAGGCTTCAAAGTTCACCGTCGGGAATTTCATCGCCGGTGGATCTTGGTTGCCGAGTACCGGCGTGCCTTTCACCTCCGGCCTCTGA 1530 53.59 MGRHSTTFVVVLIVLLIPTEIFCYSEKEIKRWCSQTPYPAPCEEFLKTKALTNKSPIVNKSHFFEILVQTALERAVSAHKNALSLGPKCRNAKEKTAWTDCVDLYDQIITRLNRTADRCSPVDAQTWLSAALTALETCRTGFEELGVSAFGYSLTANNVSKLISDGLSVNKPPSPEGYEPQTMAEGFPTWVRPGDRKLLQAGSPKANVVVAKDGSGNFQTVKEAVAAAKGGGRFVIYVKAGVYSENVEIKAKNVMLIGDGIGKTVITGSRSVGGGSTTFRSATVAVDGDGFIARDITFRNTAGAKNHQAVALRSGSDLSVFYRCGFEGFQDTLYVYAERQFYKQCDIYGTVDFIFGNAAVVIQDSNIIARDPPNKTITLTAQGRTDPNQNTGISIHNCRVTSAGGLSGVKAYLGRPWKQYSRTVFMKSSIGGFISPAGWMEWSGNFALNTLYYGEYMNTGPGASTANRVKWKGYHVITSAAEASKFTVGNFIAGGSWLPSTGVPFTSGL 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2395825 2400624 + ClG42_05g0027500.10 Clacu05g0275 248022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0275 509 Gene3D - 202 509 IPR012334 -
Clacu05g0275 509 FunFam Pectinesterase 201 509 - -
Clacu05g0275 509 ProSitePatterns Pectinesterase signature 2. 347 356 IPR033131 -
Clacu05g0275 509 Pfam Pectinesterase 207 494 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Clacu05g0275 509 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 170 IPR035513 -
Clacu05g0275 509 Pfam Plant invertase/pectin methylesterase inhibitor 28 168 IPR006501 GO:0004857(InterPro)
Clacu05g0275 509 SMART PMEI_2 24 169 IPR006501 GO:0004857(InterPro)
Clacu05g0275 509 CDD PMEI-like_3 32 174 - -
Clacu05g0275 509 NCBIfam pectinesterase inhibitor domain 4 161 IPR006501 GO:0004857(InterPro)
Clacu05g0275 509 SUPERFAMILY Pectin lyase-like 204 508 IPR011050 -
Clacu05g0275 509 Gene3D Invertase/pectin methylesterase inhibitor family protein 23 171 IPR035513 -
Clacu05g0275 509 PANTHER PECTINESTERASE 9 500 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0275 Clacu-Chr5:2395825 Clacu05g0865 Clacu-Chr5:7575506 1.30E-153 dispersed
Clacu05g0274 Clacu-Chr5:2380652 Clacu05g0275 Clacu-Chr5:2395825 1.60E-100 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0275 K01051 - csv:101217552 926.006