Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0282 ATGCTCTCTTCACATTTCCTACCTTCGAAAAACCCTATTTCCACCAACCCCACTTCCCCTTTTTCCCTATTTTACCCAAATCTCCTCCCAACCGTCCGATCGAAATCTACCAATCGCCCACAAATCTCTGCCTTCTCCACCATTAATGGCGTCTCTTCAAAACCCACGTCTCAGATTCTCAATCCAATCCCCAAATCGAGCAGATTCTGCAAAAATCCAGTGAACCCATTTCGGTTTCTTCCGTGCAAACCTAAACCCTTTGTCCCCGCCGCCGCTGCCGCAGACGGCGGCGATACCACCGCTGATTCCGCCTCCAATGGTAAAACCTTTCAGCTCGCCATCGTCTTTGGGCTCTGGTATTTTCAGAACATCGTCTTCAATATCTACAACAAGAAGGTTCTCAACATTTTCCCTTTCCCATGGCTTCTCGCTTCGTTTCAACTCTTCGCTGGATCGGTTTGGATGCTCGTTCTCTGGTCCTTTAAGCTTCAGCCATGCCCTAAAATCTCAAAGCCCTTTCTAATCGCTCTCCTCGGCCCCGCTTTGTTTCACACAATCGGCCATATCTCTGCCTGCGTTTCGTTCTCAAAAGTCGCCGTTTCTTTCACTCATGTCATTAAATCGGCGGAACCGGTCTTCTCGGTTCTTTTCTCCTCGTTCCTCGGCGATTCGTATCCAATCCAGGTCTGGCTTTCGATTCTCCCCATTGTTTTTGGCTGCTCTTTGGCCGCCATTACTGAAGCTACCTTCAATTTTGAAGGTCTATCAGGCGCCATGATTAGCAATGTAGGGTTTGTGTTAAGAAACATTTACTCCAAAAGGAGCTTGCAGAACTTCAAGGAGGTTAATGGGTTGAATTTATATGGTTGGATTAGTATAATTTCTTTGTTGTATCTGTTTCCTGTGGCCATTTTCGTCGAAGGGTCAAAATGGGTTCAAGGATATCATCAAGCAATTGCTTCCATTGGAAATGCTTCAACATTATATATCTGGGTTTTGATTTCTGGCATATTTTATCATCTTTATAATCAATCTTCGTACCAAGCTTTGGATGAGATCAGTCCTTTGACATTCTCTGTTGGGAATACAATGAAGAGAGTGGTTGTGATTGTGGCTTCTGTTTTGGTTTTTAGAAATCCAGTTAGGCCTTTAAATGCTGTTGGTTCTGCCATTGCCATTTTTGGGACTTTTCTGTATTCTCAGACAACAACTAAAAAGAGTACTAAGAAGATTGAGGAAGGTGAAAAGAAGGAATGA 1257 44.07 MLSSHFLPSKNPISTNPTSPFSLFYPNLLPTVRSKSTNRPQISAFSTINGVSSKPTSQILNPIPKSSRFCKNPVNPFRFLPCKPKPFVPAAAAADGGDTTADSASNGKTFQLAIVFGLWYFQNIVFNIYNKKVLNIFPFPWLLASFQLFAGSVWMLVLWSFKLQPCPKISKPFLIALLGPALFHTIGHISACVSFSKVAVSFTHVIKSAEPVFSVLFSSFLGDSYPIQVWLSILPIVFGCSLAAITEATFNFEGLSGAMISNVGFVLRNIYSKRSLQNFKEVNGLNLYGWISIISLLYLFPVAIFVEGSKWVQGYHQAIASIGNASTLYIWVLISGIFYHLYNQSSYQALDEISPLTFSVGNTMKRVVVIVASVLVFRNPVRPLNAVGSAIAIFGTFLYSQTTTKKSTKKIEEGEKKE 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2461866 2463122 - ClG42_05g0028200.10 Clacu05g0282 248029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0282 418 SUPERFAMILY Multidrug resistance efflux transporter EmrE 290 401 - -
Clacu05g0282 418 Pfam Triose-phosphate Transporter family 111 400 IPR004853 -
Clacu05g0282 418 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 111 410 IPR004696 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Clacu05g0282 418 PANTHER SOLUTE CARRIER FAMILY 35 108 402 IPR050186 GO:0005794(PANTHER)|GO:0015120(PANTHER)|GO:0015297(PANTHER)|GO:0071917(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0282 Clacu-Chr5:2461866 Clacu05g1612 Clacu-Chr5:23291699 5.60E-86 dispersed
Clacu05g0282 Clacu-Chr5:2461866 Clacu01g1369 Clacu-Chr1:25023010 9.30E-65 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0282 K15283 - csv:101219051 715.301