Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0286 ATGGAAGAAGAGCTGAAACTATTCAGAACGTGGTCGAGTCCGTTCCCTCTGAGGATAGTATGGGCGTTGAAATTGAAAGGATTAGAATACGATACCGTTTACGAAGATCTGGCCAACAAGAGCCCCTTGCTTTTGGAGTACAATCCGATTCATAAGAAAGTTCCGGTGCTCGTCCATGGCGGAAAGCCGATCGCCGAATCGCTCGTTATTCTTGAATACATCGACGAAACATGGAAGCAAAATCCATTGCTGCCTCAGGATCCTTACCAGAGAGCCGTTGCTCGCTTTTGGGCCAAATTTGGGGATGACAAGGTTTTGGAATCTATAAAGAAAGTGTTTATGAACCAAGGGAAAGTGAGAGAGGAAGGTGTGGAAGAAGCCTTGGAGAATTTGAAGCATTTGGAAGAAGAGTTAAAAGGAAAGAGGTTCTTTGGAGGGGAGGCCATTGGGTTTGTGGATATTACGGTTGGGTGGCTTGCAAACATAGCAAGTGTAGTGGAGGAAGTTGTTGGAGTTGAACTGATAACTGAACAAAGGTTTCCCCTCTTGTCCAAATGGATAAAGGAATTTGCTGCCTCTCCAATCATCAATGAAAACTGGCCGCCTAGAGACAAGCTTGTCACTAAGTACCAAGCAATGCGTCAAACTTTTATGAATAAACAAGCATAA 669 44.25 MEEELKLFRTWSSPFPLRIVWALKLKGLEYDTVYEDLANKSPLLLEYNPIHKKVPVLVHGGKPIAESLVILEYIDETWKQNPLLPQDPYQRAVARFWAKFGDDKVLESIKKVFMNQGKVREEGVEEALENLKHLEEELKGKRFFGGEAIGFVDITVGWLANIASVVEEVVGVELITEQRFPLLSKWIKEFAASPIINENWPPRDKLVTKYQAMRQTFMNKQA 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2474634 2476812 - ClG42_05g0028600.10 Clacu05g0286 248033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0286 222 Gene3D - 84 221 - -
Clacu05g0286 222 SUPERFAMILY Thioredoxin-like 5 104 IPR036249 -
Clacu05g0286 222 FunFam Tau class glutathione S-transferase 1 86 - -
Clacu05g0286 222 Pfam Glutathione S-transferase, C-terminal domain 117 194 IPR004046 -
Clacu05g0286 222 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 82 IPR004045 -
Clacu05g0286 222 SUPERFAMILY GST C-terminal domain-like 76 217 IPR036282 -
Clacu05g0286 222 SFLD Glutathione Transferase (cytosolic) 2 221 IPR040079 -
Clacu05g0286 222 Gene3D Glutaredoxin 1 83 - -
Clacu05g0286 222 SFLD Main.3: Omega- and Tau-like 2 221 IPR045073 -
Clacu05g0286 222 FunFam Tau class glutathione S-transferase 84 220 - -
Clacu05g0286 222 Coils Coil 121 141 - -
Clacu05g0286 222 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 4 211 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
Clacu05g0286 222 CDD GST_C_Tau 88 207 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
Clacu05g0286 222 CDD GST_N_Tau 5 78 - -
Clacu05g0286 222 Pfam Glutathione S-transferase, N-terminal domain 4 76 IPR004045 -
Clacu05g0286 222 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 87 210 IPR010987 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0813 Clacu-Chr4:22451812 Clacu05g0286 Clacu-Chr5:2474634 1.30E-29 dispersed
Clacu04g0814 Clacu-Chr4:22456606 Clacu05g0286 Clacu-Chr5:2474634 3.70E-57 dispersed
Clacu04g0815 Clacu-Chr4:22463109 Clacu05g0286 Clacu-Chr5:2474634 1.30E-49 dispersed
Clacu05g0286 Clacu-Chr5:2474634 Clacu06g1551 Clacu-Chr6:26428750 1.10E-56 dispersed
Clacu05g0286 Clacu-Chr5:2474634 Clacu05g2634 Clacu-Chr5:34007930 1.50E-45 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0286 K00799 - csv:101219529 413.305