Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0296 ATGGCGGGCTTAGATTTGGGCTCTGCTTCTCACTTTGTTCATCAACTTCAGCACCGTTCCGTCGATCTTCACCTGCAGCATCCGACGGATGTAGACGACAGTTCCGACCACCATCCGAACTCCGGCGGCGAAATCGTCGCCCGGCGGTCCAGGGGCAGACCGCCCGGTTCTAAAAATAAACCGAAGCCACCGGTTATTATTACCAGAGAAAGCGCTAACACCCTCCGAGCCCACATCTTGGAAGTCAACTCCGGTTGCGATGTCTTTGACTCCGTCGCCACTTATGCTCGGAAGCGCCAGCGTGGCATCTGCATCTTGAGCGGCACCGGCGCCGTCACCAACGTTACCTTACGGCAACCTGCATCAGCCGGTGCCGTTGTCACTCTCCCTGGCAGGTTCGAGATACTGTCTTTGTCGGGATCGTTCTTGCCGCCACCGGCTCCACCGGGAGCTACGAGTTTGACTATCTTCCTTGCGGGTGGGCAAGGACAAATCGTCGGCGGGAATGTTGTTGGACCTTTGATTGCTTCTGGACCGGTGATCGTCATTGCGTCGTCGTTTACCAATGTTGCTTACGAGAGGTTGCCGTTGGACGAGGAGGAACAACCGTCGAACAGTGGTGGTGGGAGCCTTAGCAACCCGTTTCCGGACCCATCGGCCGGGTTGCCGTTCTTTAATCTACCGTCGAGCATGGCGGGGAATCAAAATCAGCTGCCGGTGGACGGATGGGGTGGAGGAAACTCCGGTGGGAGAGCATCTTATTGA 765 56.86 MAGLDLGSASHFVHQLQHRSVDLHLQHPTDVDDSSDHHPNSGGEIVARRSRGRPPGSKNKPKPPVIITRESANTLRAHILEVNSGCDVFDSVATYARKRQRGICILSGTGAVTNVTLRQPASAGAVVTLPGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQIVGGNVVGPLIASGPVIVIASSFTNVAYERLPLDEEEQPSNSGGGSLSNPFPDPSAGLPFFNLPSSMAGNQNQLPVDGWGGGNSGGRASY 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2562919 2563850 + ClG42_05g0029600.10 Clacu05g0296 248043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0296 254 CDD DUF296 76 185 IPR005175 -
Clacu05g0296 254 SUPERFAMILY AF0104/ALDC/Ptd012-like 72 201 - -
Clacu05g0296 254 ProSiteProfiles PPC domain profile profile. 72 214 IPR005175 -
Clacu05g0296 254 MobiDBLite consensus disorder prediction 228 242 - -
Clacu05g0296 254 FunFam AT-hook motif nuclear-localized protein 75 202 - -
Clacu05g0296 254 Gene3D - 75 203 - -
Clacu05g0296 254 Pfam Plants and Prokaryotes Conserved (PCC) domain 76 188 IPR005175 -
Clacu05g0296 254 MobiDBLite consensus disorder prediction 198 254 - -
Clacu05g0296 254 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 34 207 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Clacu05g0296 254 MobiDBLite consensus disorder prediction 27 65 - -
Clacu05g0296 254 MobiDBLite consensus disorder prediction 27 44 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0249 Clacu-Chr5:2167340 Clacu05g0296 Clacu-Chr5:2562919 7.10E-58 dispersed
Clacu05g0296 Clacu-Chr5:2562919 Clacu09g1220 Clacu-Chr9:12287147 1.50E-81 dispersed
Clacu10g0173 Clacu-Chr10:2016930 Clacu05g0296 Clacu-Chr5:2562919 6.70E-13 wgd
Clacu05g0296 Clacu-Chr5:2562919 Clacu06g0070 Clacu-Chr6:851304 2.50E-89 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0296 - - - 0.0