Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0312 ATGCCTCCAAGGAAGAAGCCTCATTCTTCTTCCAAGAAGCTCAATTCAAATCAGCAATCACAGCCTTCCAAGTTTGGAATCCAACACTTCTTCGAACGCCACTCTCAAAATGTTGCGCATTCTCAGAAGATCACTTCACAAACTTCCGATTCAAAAACTGATGTTTCTAACTCTCTGAATCATGGAGATGATTCGAATGTGGGACGGTCAGATTCTAAGGACGCAGCTGCGCCGGCGACAGCTCAAAAGTCTGAGTCGCGGGTGCTTCTTGTGAGTGATGCGGTCTTAGCTTCTGAAAACCCTAAGGTACCTCAGGGGAATGATGCGGGCTGTTCGTCTTTGAGTACGACGCCTGAGAATTTGATTGCAGCTTGTGGAAATACTGGCGATGACCTTTCTAACGACCTGTCTCCAGAATTTTCCAAGTCATCGTCCCTGAAGCGCTTCAAGTTCTCTCCCGGAATGCTGATTAAGCAAAGTCAGGATGAGGGGACTACAAATGATGAGATTACATGGAAGATATCTCCAGTAAACGAAAGGCTTCAGGCTGTTTCAAAGCAACTGCCGGAAACTATAAGAGTTCTGGCGAACTCATCAAGGCTAAGTTCTTTGAGAATTCGACAGTGTTCACGAAATAAGACTTCCTCTGTCAAGCCTGGGAATTTTGAGCAGTTGAGTTCACCAAACCCGAAACCTTCTGAAGGATCAACGAGTTCGTTAAATAAGACTGGACTGAAAAGGTTAAATCCTAAAGATGAAATGGAACCCAATGGGGCGATTGATAGTTCGAGTGGCTCTAGAGTAGCTAACAGTCAGAGTCCATTCCAGACGCCCCCATCTATGTCATACTGCGACAAGATTGCCAATGATGTTTCTGCATGTAATGAAGCACCTGAACACCCTATTTTAAGGCCACACAAAAAGGCATTACTTGAGCTTTTGGATCAAGTAGAAGATGTCATAGCTGTTGATACTGTGGCTCCTTCCATTGACTTGGAGGAGGATTCATCTGAATTACGAGGTAGAAATGGTAACACATTGACTACCAGATTTGATTCAGCTGCTATGAAAGTTCCTAAAAAGATTCCAGACACCGTAATGAAGACATCCCCTTGTGATTTTCTTGTCTTGGAGGTAACAGAGAAATGTGAGCTGGCTGATACATCCGGAGTAAAACGCTCGTATAAGGTTCTTCGTTTGTTAAATGAGCAAAGTGGAGAAGAGCGGGCTGTATATCTTTGGGAAGACTGGTTTGACAGTATTATTGCACCTGGAGACACTGTGAATGTTATTGGTGAATTTGATGACCAAGGAAGATGTCATATTGACCACGACAATAATTTTGTTATCCTACACCCTGATATACTTGTCTCTGGAACTCGGGTTGCAGGTCACTTGACCTGTCCAAGGAGGAGTGTTCTTGATGAGAGGTTGAAAAGTAACGAACAGTCTATTTCAGCATTAATTGGTACTTTGCTGCACCAGGTTTTTCAGGCTGGTCTTATAGAAGAGGCACCAACTGTTGCCTTTTTGGAAGAGGTTTCAAGAACGGTGCTTCAGAAAAGTATGGAAAATGTATATGCATGCGGAGCAAATGAAAAGGATATACACGTAACCATGAATGAAGCAGTTCCAAAAATTTTGCATTGGATCACCATCTTCAAAAGCCCAATGGGTTCTAAAGCACCTAATGTTGAGTTTAGATCTGAGGATGGTCCCAGGAAAGTTAGTATATCGGAGGTGATTGATATCGAGGAGATGGCATGGGCTCCAAAATATGGTTTGAAAGGAATGATTGATGCTTCTGTCAGGGTAAACATAATGTCAAATTATAGTAAATGTGCCGAGAATGTCATGCCTTTAGAGTTTAAAACCGGAAAGGTGCCAGCTGGCCAGTCCTCCATGGAACATTGTGCCCAAGTGATCTTGTACACTCTACTTATGTCCGAGAGGTATCACAAACATGTTGGTTATGGTCTCCTTTATTATCTCCGGTCGGATCAGACACAGGGTATCCGGGTTCAAAGATCTGACTTGGTAGGGTTAATCATGCGTCGCAATGAGCTTGCAAATAACATTCTCAAGGCATCAACTGCACAATTACTCCCCCCTATGTTACAGATTCCAATTGTGTGCAAAGGATGCCGCCATCTTGATGTTTGTACCATTTATCATAAGATGCAAAATGGGAGCAAAGAGACCAGTGGGCTTGGAGTTTTATTTGACTCCCATACAGATCACTTGAAAGCTTCTCATGGTATTTTCTTTCAGCATTGGGAGAGATTGATTGATTTAGAGGCCAAGGAGACGGAGATTGTAAAGAGGGGAGTTTGGCACTCACGTAGTGCAGAGAAAAATCAAATGTCTACCTGTCTTTCTTCTATTGTTCTTAGTACGTTGGATGACCAACCACATTGTACTTTTGAAAAGGACAACCGAATCTGCTATCGTTTTGTGCGTCAAGATATGCCTTCTCTGTGTTTGAAAGATTCAAATGATGGTAGTTCAAACACTGCTTCGATAAGTGACATGGACAGTTCACTTAGAGTTGGAGACTATGTGATACTTAGTACAGATTCTGGGCATTTGACCCTAGCGAGTGGGATTATAACAGATCTGAGCAGCCTCCATATATCCGTTTCTTTTTCTAAGCGCCTACGTTTGCCTGGAAGCACTTCTTCTACAGAAGCACATGATCTTATGAAGCAGGTTTGGCGGATTGACAAGGATGAATTTATGACTTCGTTTGCAGTCATGAGGTTTAATCTTGTACAACTGTTTCTGCAAGGTGAACAAAATGCTCATCTTAGAAAGTTGATTGTAGATCTTGCGGCTCCAAGATTTGATGGAGGATGCATATTCAGCCAGGATCCAGCAATATCTTACATCTGGTCAGAGAAGAATTTAAATGATGACCAACGACGAGCTATAATTAAGATACTTACAGCAAAGGATTATGCTCTGATTCTAGGAATGCCTGGAACCGGCAAGACATCTACAATGGTTCATGCTGTGAAGGCATTGTTGATGAGAGGTGTATCCATTTTGCTCACGTCTTACACAAACACTGCTGTTGATAATTTACTTATCAAACTGAAATCTCAGAACATTGATTTTATACGGATTGGAAGAATTAATGCAGTGCACGAAGACGTTCGCAGCCATTGCTTCTCAGAGTTGAACATACAAAGTGTGGAAGACATCAGAATGAGATTGGACCAAGTGAAAGTTGTTGCAGTTACTTGTTTAGGGATAACTAGTCCCTTACTCGTCAATAAAAAATTTGATATATGCATAATGGACGAAGCTGGACAGACCACCCTTCCAGTTTCGCTTGGGCCTTTGATGTTTGCTTCAACATTTGTCCTTGTTGGCGATCACTATCAGCTACCTCCTCTTGTTCAGAGTACAGAGGCTCGGGAAAATGGACTGGGGATAAGCTTATTTTGTAGGCTTTCAGAAGCACATCCTCAAGCAATTTCCGCATTGCAAAGCCAGTATCGCATGTGCCGAGACATTATGGAATTATCAAACGCCTTAATATATGGAGACAGATTGCGTTGTGGTTCTGCAGAAACCGCGAACGCAAAGCTTGAACTTTCAAGTTCAAAGTTGTGTTCATCTTGGCTTAAGGAGGTTCTAAACCCATGCAAACCAGTTATCTTTGTTTGTACAGATTTATTACCTGCTTACGAGACAAGAGATCACAAGATTGTGAACAACCCAACTGAGGCTAGCATAGTAGCAGAGGTGACGAAGGGATTGCTTGATGGTGGAATTAAGGGGAATGAAGTTGGCATCATTACCCCGTATAACGCCCAGGCAAGCATCATTCGTCTAGCTATCAACATAGCCTCTGTGGAGGTACATACCATTGACAAATACCAGGGTAGAGATAAGGACTGCATATTGGTGTCCTTCGTTAGGTCGAGTGAAAATCCAAAGAGCTGTACTACCTCACTTCTTGGAGACTGGCATAGAATTAATGTGGCCATTACCCGTGCCAAGAAAAAGCTAATCATGGTGGGATCACGCAAAACACTATCAAAAGTTCCACTGCTGAAGCTTCTAATCAAGAAGGTGGAGGAGCAATCAGGCATCTTGAGTGTTCGTCTCGGGGGTTGTGTATCAAATGCCATGTGGGAAGCACTGAGAAAAAATGTTGTCTACTTGCGGAAAAGGCCATGGACAAGCAGGGTTGGAAAGGATGGAAGAGAAGAGCACATTTGA 4230 42.74 MPPRKKPHSSSKKLNSNQQSQPSKFGIQHFFERHSQNVAHSQKITSQTSDSKTDVSNSLNHGDDSNVGRSDSKDAAAPATAQKSESRVLLVSDAVLASENPKVPQGNDAGCSSLSTTPENLIAACGNTGDDLSNDLSPEFSKSSSLKRFKFSPGMLIKQSQDEGTTNDEITWKISPVNERLQAVSKQLPETIRVLANSSRLSSLRIRQCSRNKTSSVKPGNFEQLSSPNPKPSEGSTSSLNKTGLKRLNPKDEMEPNGAIDSSSGSRVANSQSPFQTPPSMSYCDKIANDVSACNEAPEHPILRPHKKALLELLDQVEDVIAVDTVAPSIDLEEDSSELRGRNGNTLTTRFDSAAMKVPKKIPDTVMKTSPCDFLVLEVTEKCELADTSGVKRSYKVLRLLNEQSGEERAVYLWEDWFDSIIAPGDTVNVIGEFDDQGRCHIDHDNNFVILHPDILVSGTRVAGHLTCPRRSVLDERLKSNEQSISALIGTLLHQVFQAGLIEEAPTVAFLEEVSRTVLQKSMENVYACGANEKDIHVTMNEAVPKILHWITIFKSPMGSKAPNVEFRSEDGPRKVSISEVIDIEEMAWAPKYGLKGMIDASVRVNIMSNYSKCAENVMPLEFKTGKVPAGQSSMEHCAQVILYTLLMSERYHKHVGYGLLYYLRSDQTQGIRVQRSDLVGLIMRRNELANNILKASTAQLLPPMLQIPIVCKGCRHLDVCTIYHKMQNGSKETSGLGVLFDSHTDHLKASHGIFFQHWERLIDLEAKETEIVKRGVWHSRSAEKNQMSTCLSSIVLSTLDDQPHCTFEKDNRICYRFVRQDMPSLCLKDSNDGSSNTASISDMDSSLRVGDYVILSTDSGHLTLASGIITDLSSLHISVSFSKRLRLPGSTSSTEAHDLMKQVWRIDKDEFMTSFAVMRFNLVQLFLQGEQNAHLRKLIVDLAAPRFDGGCIFSQDPAISYIWSEKNLNDDQRRAIIKILTAKDYALILGMPGTGKTSTMVHAVKALLMRGVSILLTSYTNTAVDNLLIKLKSQNIDFIRIGRINAVHEDVRSHCFSELNIQSVEDIRMRLDQVKVVAVTCLGITSPLLVNKKFDICIMDEAGQTTLPVSLGPLMFASTFVLVGDHYQLPPLVQSTEARENGLGISLFCRLSEAHPQAISALQSQYRMCRDIMELSNALIYGDRLRCGSAETANAKLELSSSKLCSSWLKEVLNPCKPVIFVCTDLLPAYETRDHKIVNNPTEASIVAEVTKGLLDGGIKGNEVGIITPYNAQASIIRLAINIASVEVHTIDKYQGRDKDCILVSFVRSSENPKSCTTSLLGDWHRINVAITRAKKKLIMVGSRKTLSKVPLLKLLIKKVEEQSGILSVRLGGCVSNAMWEALRKNVVYLRKRPWTSRVGKDGREEHI 1409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2684613 2702105 - ClG42_05g0031200.10 Clacu05g0312 248059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0312 1409 Gene3D - 458 722 IPR011604 -
Clacu05g0312 1409 FunFam DNA replication helicase Dna2 903 1166 - -
Clacu05g0312 1409 Pfam AAA domain 1069 1136 IPR041677 GO:0004386(InterPro)
Clacu05g0312 1409 Pfam AAA domain 968 1060 IPR041677 GO:0004386(InterPro)
Clacu05g0312 1409 Pfam AAA domain 1145 1345 IPR041679 -
Clacu05g0312 1409 CDD SF1_C_Upf1 1169 1362 IPR047187 -
Clacu05g0312 1409 MobiDBLite consensus disorder prediction 206 245 - -
Clacu05g0312 1409 MobiDBLite consensus disorder prediction 34 65 - -
Clacu05g0312 1409 Pfam DNA replication factor Dna2 403 605 IPR014808 -
Clacu05g0312 1409 Gene3D - 1065 1166 IPR027417 -
Clacu05g0312 1409 Gene3D - 911 1059 IPR027417 -
Clacu05g0312 1409 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 967 1354 IPR027417 -
Clacu05g0312 1409 Gene3D - 845 910 - -
Clacu05g0312 1409 MobiDBLite consensus disorder prediction 259 281 - -
Clacu05g0312 1409 FunFam DNA replication helicase 1167 1377 - -
Clacu05g0312 1409 Gene3D - 1167 1374 IPR027417 -
Clacu05g0312 1409 MobiDBLite consensus disorder prediction 1 87 - -
Clacu05g0312 1409 CDD DEXXQc_DNA2 968 1168 IPR026851 GO:0017116(InterPro)
Clacu05g0312 1409 PANTHER DNA2/NAM7 HELICASE FAMILY 199 1363 IPR045055 GO:0005737(PANTHER)|GO:0017108(PANTHER)|GO:0071932(PANTHER)
Clacu05g0312 1409 MobiDBLite consensus disorder prediction 206 281 - -
Clacu05g0312 1409 FunFam DNA replication helicase Dna2 567 722 - -
Clacu05g0312 1409 CDD DNA2_N-like 458 693 - -
Clacu05g0312 1409 MobiDBLite consensus disorder prediction 12 26 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0312 Clacu-Chr5:2684613 Clacu10g1701 Clacu-Chr10:30497027 3.10E-43 dispersed
Clacu10g0199 Clacu-Chr10:2352937 Clacu05g0312 Clacu-Chr5:2684613 6.40E-32 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0312 K10742 - csv:101220726 2422.89