Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0335 ATGTCTTTCAATCAATCAAGGCATGATAAGAATGAGGATCCTCAGTTTAAGAAATCTGGCCGATCGTCGAGCTCCAATCAACAGAAAATCTCTTGTGAACTTCATTCTAAGCCGGGCGATTCCGGCAGGTATGCGCCGCCGATCATCTCCAACCATAGTGTTAAGCAGTCTAACGATGCGCAACAAGCACGGAAAACTAGGGCTGGTGTATCCTCTGTAAGTTCTACCGTTTCTACTACCCCTCGGGAAGGGCAAAACGGTTCTCATGTGCAGCCGCAACAGAATGGTTCAGCATCCAATCCAGTAACATTGTCAGGATCCGAAAGCGGGGTTGTTAAAAAAAATGCAACTTCTCGAACGGCCTCCAAGACTTTTGATGCATTTTTAGAATCCAAGAGCGGAATTGTTCAAAATAATGCAACTTCTAAGCCTACCTCAAAAACTTTCGGCACTACCTCCTTTAAAGACCTGGGGGAACAGCATATGACATTTCCACTTCAATTTGGATCCTTAAGTCCTGGTTTCCAGATTCCTAGGACCAGCTCAGCTCCTTCGAATCTGCAAGAACAGATATTGAACCAGGCACCACGCCATGTGTTTAAATCTGTACCTTCAGGGTCAGTGCAGCCAGTACCCAGACAACCAATAGCAAACAATGATTCCAGTGTCTGTGATCAACCAAATATTGGAACATCCAATCCAGAGCCAGAGACCAAAAAGGAGATGCAAGTCTCGTCAGGAGCACCGGTAAGCCAGATTCAGAAGCCTTCCCATGTATCATTTGTTAGTCACAGAGCTTCTATTTCCCTCCCTGACAGTAAGAGTATGAGCCTTGTGCATCATGTTGCTAATTCACCTAATGTGAAAGAAGTCCAAGTTCACGATGAGAACTCTACTTCCTCAGCAGCAAAGCATGTGGCAATGCAGTCTCTTCCTGGGTCTTTGACGCAGGTCATCTACTCATGTCCTAAAGAAAGCCTATCTAAGTCCAACTCAATTGAGGCCGATAACAAAGTATCCGGCAAGAAAGGACCGATTCAACTGCTGCATCAGGTTGAGGTTCCAGATCCCATTTTTTATACTAAGCTGGAATCCTCTTTGCAATTCGAGCAATCAAAGCATGAGCTCTTTGGAACAGAAAAGGTAGGAGCAAGAAGATCGCCTGATTCTCAAGATAACATAGAACAAAGTAAACCACCATCTTGTATGAAGCCAACTGCAATTAATAACGGCAATTCAACGTCAAAAACACTGAAAGAAGTTGGCAGTACAAACGACAATAATGTTCTTTCTAACTCCATAACTCATGGTTGTAAGACTTCACCTATTATTATATCTTCTTGTCAAAGCGATAGTAACACTATCGATGATACTGTAGTTTGCCAAGCTGATCTGCAATCTCCTCTTGTTGAAACGTCTGACCTCTCAGAGATGAAGCAGGAAGGAGATAGAATAGAGCACACAGGTGGTCAATGTGACCCTAATTTTAGACCCTTTATTGAAGATAAATCTGTCATAGACATAAATAAGATGAGGAATAGGTCGAAGAAGAAGAGGAAGGAAATTCTTCGGAAGGCAGATGCTGCTGGGACTACTTCTGACCTTTATATGGCATATAAAGAACCTGAAGAGAAGAAAGAGACTACTATCTCTGCAGAAAGCTCCAATGAGAGCATAAATATGAAACACGAGTCTGCTGGTTCCTTTAAGGAAGAGGCTGCCTTGACCAAGAAGGATGTTCAGGGTAAACTCGAGCCAGATGATTGGGAAGATTCAGTTGATAATTCTACTGATACATTGAAATACGAGGGTGGTTTTGAGGATAAGGCCAACGGAAAAGTTGCATTGCACCTGGAGGATGGGAGTAGAGATCTGGCCAAAAAGTACTCCAGAGATTTCCTCCTGAAATTCGCCGAGCAGTTCATGGACCTTCCCGATGGGTTTGAAGTTTCTCCCAACATGAAGGCTTTAATGAGTAACCATGGCTCTCGTTCTGTCAATAGTAACTCACCTGCTAATCATGAAAAAATGGATAAGCCAAGTGGAGGGTCTCGACTTGATCATCGTGCTATTACTGTGGATGACAGACTATTTGCTTCAGGGCGGCATTCGCACTTGGATAGCACTCGACCTACTCAAGGTGCTAACAATAGTGCTGTAAAGACCCCTTGGGCGCACACCGGTTCACAGGGAAAGATCCAAAGAAATGGCTCCAATACTGATAGGTGGCAAAGAGATGCTAGTTTTCAGCTGAAAGGTATAATTTCTCCTTCAACTCCATCACAGGTGATGCACAGAGCCGAGAAGAAATATGAAGTGGGTAAAGTGGCTGACCAGGAAGAGACCAAACAAAGGCAGCTGAAGGCTATACTAAACAAGCTAACTCCACAAAATTTTGAAAAACTCTTTGAACAAGTGAAAGCAGTTAATATTGATAGTTCGAAGACACTAAGTGGTGTCATCTCTCAGATATTTGACAAAGCTCTGATGGAGCCTACTTTCTGTGAAATGTATGCCAATTTTTGTCTCCATCTGGCTGGCGAGTTACCTGATTTTAGCGATGATAATCAGAAGATTACTTTTAAGAGGTTGCTTTTAAACAAATGCCAAGAGGAATTTGAGAAAGAGCAGGAAGAAAATGATGAAGTTAATAAGGTCGGTGAGATGAAACAGTCTGCAGAGGAACGAGAAGTGAATAGAATAAAGGCGCGCAGAAGAATGCTTGGCAACATTAGGTTAATTGGGGAGCTTTACAAGAAAAAGATGATAACAGAGAAAATTATGCATGTATGCATCAAGAAATTGTTAGGTCCGTACCAAAATCCGGATGAGGAAGATATTGAAGCATTATGCAAATTGATGACCACTATAGGAGAGATGATAGATCACCCCAAAGCTAAGGAGCATATGAATGCATATTTTGAGATGATGACTAAATTATCTAATAACATGAAGCTGTCATCTAGAGTTAGATTCATGTTGAAGGATGCAATTGATTTGAGAAAGAATAAATGGCAACAGAGGAGAAAAATTGAAGGACCTAAAAAAATTGATGAAGTGCACAGGGATGCTGTGCAAGAACGTCAAGCGCAAGCTAGTAGATTAAGCCGTGGTCCTGGAATCAGTGCACCATTGAGGAGGGGAACATCCATGGATTTTGGTTCAAAAGCGCCTGCATTATTGCCTTCTCCCAATGCCCAGATTGGTGGTTTTCACGGTTTTTCAACCCAGAATTGTGGTTCAAGCAGTCAAGACGCTCGTTTTGAAGGTAAACTACGGTCTCCTGAGGCCAAGGCATTCCCAACTCCGTTGCCCCAAAGACCTATCAGTGATGATGCTATCACTTTAGGTCCCCAGGGTAGTTTAGCTAGAGGAATGTCCATTAGAGGGTCAAGATCCATTTCATCCAATTCATTAGTAGATTTGTCCTTGCCGACTGGTAATAACTGCCAAAGAATGGTAGCTGCTTTAAATCCTCATGGCCTTGTATCAGAGCATGCAATTTCCAACTCCAGAGGGGACATCCCTTCAAGAAAATTTTCAAAGGGAACTCTAGGTTCAGAATCCTTCGATCAGGCGACGAGTACACTGGAACCTGGTATTAGTTTTGGATCTAGGCAAAGGGGAAACGTTGATAGCGGTCTTGGGAGGTCTCAGCCGACCAAATATGAACAACCAGCTTTGACTACGAATGGCCATTCTGAGGTTACGTCCAAAGAACATCTACGAGATAAGTCCATAGCAGCTATTAGGGAATATTACAGTGCTAGAGATGAGAAGGAAGTTACCCTGTGCATCAAGGACTTGAATTCGCCTGAATTCCATTCATCCATGATTTCTCTTTGGGTCACAGACTCCTTTGAGAGAGAAAACACAGAAAGGGATCTTTTAGCTAAACTTCTTGTTAGCCTCACCAAATCAAAGGATGATACATTGACTCAACTCCAACTTCTCAAAGGAATCCAGCTCGTTGTCGCCACACTGGAGGATGCTGTGAATGATGCCCCAAAAGCTCCAGAATTTATGGGCCAATTACTCGCTAACTTGGTGGTGGAAAACTTGATTTCATTGAAAGAAATCGGGAAGTTTATATATGAAGGTGGAGAGGAGGCTGGGAAGCTTCTACAAGTTGGGCTTGCAGCTGATGTTCTTGGCAACGTGCTGGAAGTAGTTCAATTGGAGAAAGGTCAGATTTTCTTGAACGAAATTCTTAAATGTTCTGATCTACAATTAGAAACATTTCGCCCTTCATACCCAATCAAATCGACAAAGTTAGAGAAATTTATTTAG 4290 42.63 MSFNQSRHDKNEDPQFKKSGRSSSSNQQKISCELHSKPGDSGRYAPPIISNHSVKQSNDAQQARKTRAGVSSVSSTVSTTPREGQNGSHVQPQQNGSASNPVTLSGSESGVVKKNATSRTASKTFDAFLESKSGIVQNNATSKPTSKTFGTTSFKDLGEQHMTFPLQFGSLSPGFQIPRTSSAPSNLQEQILNQAPRHVFKSVPSGSVQPVPRQPIANNDSSVCDQPNIGTSNPEPETKKEMQVSSGAPVSQIQKPSHVSFVSHRASISLPDSKSMSLVHHVANSPNVKEVQVHDENSTSSAAKHVAMQSLPGSLTQVIYSCPKESLSKSNSIEADNKVSGKKGPIQLLHQVEVPDPIFYTKLESSLQFEQSKHELFGTEKVGARRSPDSQDNIEQSKPPSCMKPTAINNGNSTSKTLKEVGSTNDNNVLSNSITHGCKTSPIIISSCQSDSNTIDDTVVCQADLQSPLVETSDLSEMKQEGDRIEHTGGQCDPNFRPFIEDKSVIDINKMRNRSKKKRKEILRKADAAGTTSDLYMAYKEPEEKKETTISAESSNESINMKHESAGSFKEEAALTKKDVQGKLEPDDWEDSVDNSTDTLKYEGGFEDKANGKVALHLEDGSRDLAKKYSRDFLLKFAEQFMDLPDGFEVSPNMKALMSNHGSRSVNSNSPANHEKMDKPSGGSRLDHRAITVDDRLFASGRHSHLDSTRPTQGANNSAVKTPWAHTGSQGKIQRNGSNTDRWQRDASFQLKGIISPSTPSQVMHRAEKKYEVGKVADQEETKQRQLKAILNKLTPQNFEKLFEQVKAVNIDSSKTLSGVISQIFDKALMEPTFCEMYANFCLHLAGELPDFSDDNQKITFKRLLLNKCQEEFEKEQEENDEVNKVGEMKQSAEEREVNRIKARRRMLGNIRLIGELYKKKMITEKIMHVCIKKLLGPYQNPDEEDIEALCKLMTTIGEMIDHPKAKEHMNAYFEMMTKLSNNMKLSSRVRFMLKDAIDLRKNKWQQRRKIEGPKKIDEVHRDAVQERQAQASRLSRGPGISAPLRRGTSMDFGSKAPALLPSPNAQIGGFHGFSTQNCGSSSQDARFEGKLRSPEAKAFPTPLPQRPISDDAITLGPQGSLARGMSIRGSRSISSNSLVDLSLPTGNNCQRMVAALNPHGLVSEHAISNSRGDIPSRKFSKGTLGSESFDQATSTLEPGISFGSRQRGNVDSGLGRSQPTKYEQPALTTNGHSEVTSKEHLRDKSIAAIREYYSARDEKEVTLCIKDLNSPEFHSSMISLWVTDSFERENTERDLLAKLLVSLTKSKDDTLTQLQLLKGIQLVVATLEDAVNDAPKAPEFMGQLLANLVVENLISLKEIGKFIYEGGEEAGKLLQVGLAADVLGNVLEVVQLEKGQIFLNEILKCSDLQLETFRPSYPIKSTKLEKFI 1429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2891927 2898233 + ClG42_05g0033500.10 Clacu05g0335 248082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0335 1429 Gene3D - 784 1017 - -
Clacu05g0335 1429 MobiDBLite consensus disorder prediction 1183 1235 - -
Clacu05g0335 1429 MobiDBLite consensus disorder prediction 203 241 - -
Clacu05g0335 1429 MobiDBLite consensus disorder prediction 659 675 - -
Clacu05g0335 1429 MobiDBLite consensus disorder prediction 381 415 - -
Clacu05g0335 1429 MobiDBLite consensus disorder prediction 18 34 - -
Clacu05g0335 1429 SUPERFAMILY ARM repeat 1238 1419 IPR016024 -
Clacu05g0335 1429 MobiDBLite consensus disorder prediction 393 415 - -
Clacu05g0335 1429 MobiDBLite consensus disorder prediction 1027 1046 - -
Clacu05g0335 1429 MobiDBLite consensus disorder prediction 207 241 - -
Clacu05g0335 1429 MobiDBLite consensus disorder prediction 705 741 - -
Clacu05g0335 1429 ProSiteProfiles MI domain profile. 1241 1365 IPR003891 -
Clacu05g0335 1429 MobiDBLite consensus disorder prediction 1 118 - -
Clacu05g0335 1429 SMART ma3_7 1242 1356 IPR003891 -
Clacu05g0335 1429 MobiDBLite consensus disorder prediction 1183 1239 - -
Clacu05g0335 1429 Pfam MA3 domain 1243 1355 IPR003891 -
Clacu05g0335 1429 MobiDBLite consensus disorder prediction 877 897 - -
Clacu05g0335 1429 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 227 1418 IPR045208 GO:0003729(PANTHER)|GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0016281(PANTHER)
Clacu05g0335 1429 MobiDBLite consensus disorder prediction 659 687 - -
Clacu05g0335 1429 FunFam Eukaryotic translation initiation factor 4G 784 1017 - -
Clacu05g0335 1429 Pfam MIF4G domain 785 1004 IPR003890 GO:0003723(InterPro)|GO:0005515(InterPro)
Clacu05g0335 1429 SUPERFAMILY ARM repeat 778 1006 IPR016024 -
Clacu05g0335 1429 FunFam Eukaryotic translation initiation factor 4G 1235 1428 - -
Clacu05g0335 1429 SMART if4_15 784 1004 IPR003890 GO:0003723(InterPro)|GO:0005515(InterPro)
Clacu05g0335 1429 Coils Coil 866 886 - -
Clacu05g0335 1429 MobiDBLite consensus disorder prediction 50 118 - -
Clacu05g0335 1429 MobiDBLite consensus disorder prediction 1 17 - -
Clacu05g0335 1429 Gene3D - 1233 1429 - -
Clacu05g0335 1429 MobiDBLite consensus disorder prediction 703 741 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0335 Clacu-Chr5:2891927 Clacu06g1345 Clacu-Chr6:24313698 3.90E-54 dispersed
Clacu05g0335 Clacu-Chr5:2891927 Clacu06g0861 Clacu-Chr6:10795839 4.30E-271 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0335 K03260 - csv:101222372 2216.42