Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0350 ATGGAAGCAGCTGCTGGCGGCGCCGGTCCGGCGCCGTTTCTCATCAAGACCTACGATATGGTTGACGACTCAGCCACCGATGAGATCGTCTCCTGGACCTCTTCGAAGAAGAGTTTTGTGGTCTGGAATCCCCCTGAATTCGCCCGCCTTCTTCTCCCCACGTTTTTCAAGCACAGCAACTTCTCCAGCTTCATTCGGCAGCTTAATACCTATGGGTTTCGAAAGATTGATTCTGAGAAGTGGGAATTTGCAAATGAAGATTTCATAAAGGATCAAAAACATCTGCTGAAAAACATTCACCGTCGAAAACCAATTCACAGTCACAGTAATCCTCAAGGATCTCATGTAGATCCAGAAAGAGCTGCTTTTGAAGATGAAATAGAGAGGCTATCACGTGAAAAATCTACACTTGAAGCCAATATATCAAGGTTCAAACAGCAAAAATCGACTGCTAAACTTCAGTTGCAAGATCTAACGGTGAAGGTGGAAAGCATGGAAAAAAGGCAGAAGAATTTATTGGCATTTTTAGAAAAGGCTGTTCAGAATCCTTCTTTTGTTGAACATCTTGCTCGAAGGGTCGAGACTATGGACTTTACAGCATTTAAAAAAAAGAGACGACTACCTTCGGCTGATCTTTCACAGCCAGCCATAGAAAATAGTTTTTTGGATAACCATAGTAGTTCCAGATCTGAGTCTGGTAATATTTTTCATCAAGATTTTTCACATAAGCTGAGATTAGAAACTCCATGTGCATCAGATATCAACTTAATTTCACGCAGCACCCAGAGCTCAAATGAAGAAGGGGGAAGTTCACAAAGACTTATGTCAAAACTTGATGCTAGAGCTGTCCAAGAAAATCTTTATTTTGCAACTGAAACATTAGATCTCTCAGACACTGGGACATCGTTTATATTGAAGAGGGATTCATCTTTGTCAGCGAAATCACCTAACGACGAGAGTCCACGTCTACACTCATTGCAACCAAGTGTTAGTTCCAAAGAAGATGGAGAAAGTCACATCTCATGTCAATTGAATCTCACTCTCGCATCTTCTTCCCTGCGAATCAATGACACCGCTTGTTCAGTTCGAATGCCACAACTGGGTCAGAATATTCGAAAATCCCCAGATTCAAAGCCGCTCCTATCAGGGTCAATGATGTTTTTTGGGAACAGTTCCTTACTGAAAGACCGGGTTGTCCCGAAAGTGAAGAGGCAAGTTCTAATTACAGGGCAAATTTATATAAGGAGCCAGATGATGGGAGATCAGGCCTATCTCTTTGACTATAGAGTTGCTTCCTATAGTTGCTCTGTGATTTTTCGGAGTTACTCGTACCCTGGTGCGACGAGTTCTTCTTGGTACATTGTAATCGTGTATAATGTTGTTCATTCATGGATGATTAGAAGTGGGCGATTGTCTGGCCTGATATCACAACTTCAGAAAGTGCGGAAGAATCCATTGGGGAGGAAGGTGCATATTCATACTTGCGACAGGTTTAGTGATGGGGGCAGAGCCGACCTTCTTTGGATAACACATTGGCCTTTCAGGATTTTTGGTCTATGTTTGCAGGCAAAAGCATTTCTATTTATGAACATCCAACCAATAAAGAATCTCACATTCAGAGCCTATATTGCTGGAGAAGAAGACGAAACAGTGAAAAAACAAAGCAGAGACGCAAACAAATTCCCTTCAGAATGGTCTTTTAAGGGCAGTAAAATGGATTTAATGGCAAAAGGGGTTTGCAATCAGAAGATCGGTGAGTGTCTGACTGAGCCAGAAATGGAATCAGAAATCAGTAGGAGAGTTCTGATGATGCAGAAGAAGTATATAAGCTACGATACACTTAGAAGGGACATGGTTCCTTGTTCAAGACCAGGTGTTTCATATTATGAATGTCATCCTGGTCCAGCAAATTCTTATGACAGAGGCTGTGAAGTCATTACTAGATGTGCTAGAGATGTTCATGACATAAACACTTGA 1977 41.78 MEAAAGGAGPAPFLIKTYDMVDDSATDEIVSWTSSKKSFVVWNPPEFARLLLPTFFKHSNFSSFIRQLNTYGFRKIDSEKWEFANEDFIKDQKHLLKNIHRRKPIHSHSNPQGSHVDPERAAFEDEIERLSREKSTLEANISRFKQQKSTAKLQLQDLTVKVESMEKRQKNLLAFLEKAVQNPSFVEHLARRVETMDFTAFKKKRRLPSADLSQPAIENSFLDNHSSSRSESGNIFHQDFSHKLRLETPCASDINLISRSTQSSNEEGGSSQRLMSKLDARAVQENLYFATETLDLSDTGTSFILKRDSSLSAKSPNDESPRLHSLQPSVSSKEDGESHISCQLNLTLASSSLRINDTACSVRMPQLGQNIRKSPDSKPLLSGSMMFFGNSSLLKDRVVPKVKRQVLITGQIYIRSQMMGDQAYLFDYRVASYSCSVIFRSYSYPGATSSSWYIVIVYNVVHSWMIRSGRLSGLISQLQKVRKNPLGRKVHIHTCDRFSDGGRADLLWITHWPFRIFGLCLQAKAFLFMNIQPIKNLTFRAYIAGEEDETVKKQSRDANKFPSEWSFKGSKMDLMAKGVCNQKIGECLTEPEMESEISRRVLMMQKKYISYDTLRRDMVPCSRPGVSYYECHPGPANSYDRGCEVITRCARDVHDINT 658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2993941 3010593 + ClG42_05g0035000.10 Clacu05g0350 248097

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0350 658 Pfam HSF-type DNA-binding 13 102 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu05g0350 658 Coils Coil 120 168 - -
Clacu05g0350 658 SUPERFAMILY Winged helix DNA-binding domain 9 102 IPR036390 -
Clacu05g0350 658 MobiDBLite consensus disorder prediction 309 334 - -
Clacu05g0350 658 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 9 298 IPR027725 GO:0000978(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0034605(PANTHER)
Clacu05g0350 658 ProSitePatterns HSF-type DNA-binding domain signature. 52 76 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu05g0350 658 Gene3D - 8 103 IPR036388 -
Clacu05g0350 658 FunFam Heat shock transcription factor 1 6 103 - -
Clacu05g0350 658 Pfam Rapid ALkalinization Factor (RALF) 590 651 IPR008801 -
Clacu05g0350 658 PRINTS Heat shock factor (HSF) domain signature 51 63 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu05g0350 658 PRINTS Heat shock factor (HSF) domain signature 13 36 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu05g0350 658 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu05g0350 658 SMART hsfneu3 9 102 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0350 K09419 - - csv:101203054 698.353
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0350 Clacu-Chr5:2993941 Clacu10g0142 Clacu-Chr10:1719777 1.00E-49 dispersed
Clacu05g0350 Clacu-Chr5:2993941 Clacu03g0743 Clacu-Chr3:8245862 2.30E-49 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu05g0557 . 37 237 HSF AT4G17750 59.6 1.8e-62 237.3
Clacu09g0731 . 41 282 HSF AT4G17750 51.0 1.8e-59 227.3
Clacu08g1864 . 42 242 HSF AT4G17750 54.6 5.9e-58 222.2
Clacu10g1915 . 306 465 HSF AT4G17750 56.3 1.5e-45 181.0
Clacu01g0304 . 41 163 HSF AT4G17750 61.8 3.6e-39 159.8
Clacu08g1762 . 14 118 HSF AT4G17750 69.5 3.6e-39 159.8
Clacu05g2195 . 20 118 HSF AT4G17750 69.7 2.3e-38 157.1
Clacu05g0557 . 38 242 HSF AT5G16820 57.0 4.7e-60 229.2
Clacu07g0047 . 41 262 HSF AT5G16820 51.7 3.0e-59 226.5
Clacu09g0731 . 42 254 HSF AT5G16820 54.0 5.4e-56 215.7
Clacu08g1864 . 43 253 HSF AT5G16820 51.1 4.5e-55 212.6
Clacu10g1915 . 305 465 HSF AT5G16820 57.1 2.3e-46 183.7
Clacu01g2475 . 9 191 HSF AT5G16820 50.3 5.2e-43 172.6
Clacu02g1871 . 13 188 HSF AT5G16820 50.3 2.9e-41 166.8
Clacu10g0142 . 24 515 HSF AT1G32330 54.0 1.1e-120 430.6
Clacu05g0557 . 26 227 HSF AT1G32330 54.0 1.0e-59 228.0
Clacu09g0731 . 30 250 HSF AT1G32330 51.8 9.8e-58 221.5
Clacu07g0047 . 27 226 HSF AT1G32330 53.1 3.7e-57 219.5
Clacu08g1864 . 31 223 HSF AT1G32330 54.1 1.0e-54 211.5
Clacu10g1915 . 294 448 HSF AT1G32330 54.8 2.5e-45 180.3
Clacu08g1762 . 20 117 HSF AT1G32330 72.4 3.0e-38 156.8
Clacu07g0047 . 41 262 HSF AT3G02990 52.6 2.9e-62 236.5
Clacu05g0557 . 38 241 HSF AT3G02990 57.6 2.4e-61 233.4
Clacu09g0731 . 42 265 HSF AT3G02990 52.4 1.9e-58 223.8
Clacu08g1864 . 43 242 HSF AT3G02990 51.7 5.8e-55 212.2
Clacu10g1915 . 305 465 HSF AT3G02990 52.7 5.1e-43 172.6
Clacu05g0557 . 25 287 HSF AT2G26150 52.3 3.4e-68 255.8
Clacu09g0731 . 30 249 HSF AT2G26150 54.3 5.0e-64 241.9
Clacu10g0142 . 29 243 HSF AT2G26150 58.8 1.2e-60 230.7
Clacu11g0317 . 28 247 HSF AT2G26150 51.1 8.9e-53 204.5
Clacu10g1915 . 294 452 HSF AT2G26150 52.2 2.4e-42 169.9
Clacu03g0743 . 5 156 HSF AT2G26150 52.0 3.9e-40 162.5
Clacu10g1915 . 290 465 HSF AT5G03720 68.2 2.3e-63 240.0
Clacu05g0350 . 6 353 HSF AT4G13980 54.4 1.6e-97 353.6
Clacu02g1871 . 4 183 HSF AT4G13980 50.6 1.3e-43 174.5
Clacu05g0557 . 26 218 HSF AT5G43840 54.4 1.6e-55 213.4
Clacu08g1864 . 31 234 HSF AT5G43840 50.5 1.5e-45 180.3
Clacu09g0731 . 30 368 HSF AT3G22830 53.4 5.1e-92 335.1
Clacu07g0047 . 16 350 HSF AT3G22830 50.9 6.5e-87 318.2
Clacu08g1864 . 31 253 HSF AT3G22830 54.1 2.0e-64 243.4
Clacu10g0142 . 12 242 HSF AT3G22830 55.7 2.2e-63 240.0
Clacu09g0731 . 29 343 HSF AT3G51910 50.9 2.0e-71 266.2
Clacu07g0047 . 26 322 HSF AT3G51910 52.5 8.2e-70 260.8
Clacu08g1864 . 31 223 HSF AT3G51910 56.0 4.8e-54 208.4
Clacu07g0047 . 27 321 HSF AT3G63350 50.3 4.4e-66 248.4
Clacu08g1864 . 31 230 HSF AT3G63350 52.5 3.4e-50 195.7
Clacu02g1871 . 5 140 HSF AT3G63350 56.6 3.0e-38 156.0
Clacu11g0317 . 32 248 HSF AT5G54070 51.4 2.5e-52 203.0
Clacu01g1752 . 46 337 HSF AT4G36990 51.8 2.3e-70 262.7
Clacu08g1762 . 17 115 HSF AT5G62020 67.7 1.8e-38 156.8
Clacu01g0304 . 64 385 HSF AT4G11660 51.9 7.9e-79 291.2
Clacu08g1762 . 16 121 HSF AT4G11660 71.7 3.7e-44 176.0
Clacu01g1752 . 46 148 HSF AT4G11660 72.8 1.7e-41 167.2
Clacu03g1284 . 26 125 HSF AT4G11660 68.0 1.0e-38 157.9
Clacu10g0142 . 33 126 HSF AT4G11660 69.1 1.7e-36 150.6
Clacu10g1561 . 14 222 HSF AT2G41690 53.6 9.1e-52 200.7
Clacu04g0365 . 7 214 HSF AT2G41690 51.0 2.5e-49 192.6
Clacu08g1762 . 9 372 HSF AT1G46264 52.9 2.0e-89 326.2
Clacu05g2195 . 1 238 HSF AT1G46264 63.8 2.0e-81 299.7
Clacu03g1284 . 25 206 HSF AT1G46264 51.9 2.9e-51 199.5
Clacu10g0142 . 33 138 HSF AT1G46264 73.6 3.5e-41 166.0
Clacu02g1871 . 5 115 HSF AT1G46264 63.1 4.0e-37 152.5
Clacu10g1561 . 21 118 HSF AT1G46264 68.4 6.9e-37 151.8
Clacu06g0912 . 9 142 HSF AT3G24520 64.9 3.8e-45 179.1
Clacu05g0557 . 37 237 HSF AT4G17750 59.6 1.8e-62 237.3
Clacu09g0731 . 41 282 HSF AT4G17750 51.0 1.8e-59 227.3
Clacu08g1864 . 42 242 HSF AT4G17750 54.6 5.9e-58 222.2
Clacu10g1915 . 306 465 HSF AT4G17750 56.3 1.5e-45 181.0
Clacu01g0304 . 41 163 HSF AT4G17750 61.8 3.6e-39 159.8
Clacu08g1762 . 14 118 HSF AT4G17750 69.5 3.6e-39 159.8
Clacu05g2195 . 20 118 HSF AT4G17750 69.7 2.3e-38 157.1
Clacu05g0557 . 38 242 HSF AT5G16820 57.0 4.7e-60 229.2
Clacu07g0047 . 41 262 HSF AT5G16820 51.7 3.0e-59 226.5
Clacu09g0731 . 42 254 HSF AT5G16820 54.0 5.4e-56 215.7
Clacu08g1864 . 43 253 HSF AT5G16820 51.1 4.5e-55 212.6
Clacu10g1915 . 305 465 HSF AT5G16820 57.1 2.3e-46 183.7
Clacu01g2475 . 9 191 HSF AT5G16820 50.3 5.2e-43 172.6
Clacu02g1871 . 13 188 HSF AT5G16820 50.3 2.9e-41 166.8
Clacu10g0142 . 24 515 HSF AT1G32330 54.0 1.1e-120 430.6
Clacu05g0557 . 26 227 HSF AT1G32330 54.0 1.0e-59 228.0
Clacu09g0731 . 30 250 HSF AT1G32330 51.8 9.8e-58 221.5
Clacu07g0047 . 27 226 HSF AT1G32330 53.1 3.7e-57 219.5
Clacu08g1864 . 31 223 HSF AT1G32330 54.1 1.0e-54 211.5
Clacu10g1915 . 294 448 HSF AT1G32330 54.8 2.5e-45 180.3
Clacu08g1762 . 20 117 HSF AT1G32330 72.4 3.0e-38 156.8
Clacu07g0047 . 41 262 HSF AT3G02990 52.6 2.9e-62 236.5
Clacu05g0557 . 38 241 HSF AT3G02990 57.6 2.4e-61 233.4
Clacu09g0731 . 42 265 HSF AT3G02990 52.4 1.9e-58 223.8
Clacu08g1864 . 43 242 HSF AT3G02990 51.7 5.8e-55 212.2
Clacu10g1915 . 305 465 HSF AT3G02990 52.7 5.1e-43 172.6
Clacu05g0557 . 25 287 HSF AT2G26150 52.3 3.4e-68 255.8
Clacu09g0731 . 30 249 HSF AT2G26150 54.3 5.0e-64 241.9
Clacu10g0142 . 29 243 HSF AT2G26150 58.8 1.2e-60 230.7
Clacu11g0317 . 28 247 HSF AT2G26150 51.1 8.9e-53 204.5
Clacu10g1915 . 294 452 HSF AT2G26150 52.2 2.4e-42 169.9
Clacu03g0743 . 5 156 HSF AT2G26150 52.0 3.9e-40 162.5
Clacu10g1915 . 290 465 HSF AT5G03720 68.2 2.3e-63 240.0
Clacu05g0350 . 6 353 HSF AT4G13980 54.4 1.6e-97 353.6
Clacu02g1871 . 4 183 HSF AT4G13980 50.6 1.3e-43 174.5
Clacu05g0557 . 26 218 HSF AT5G43840 54.4 1.6e-55 213.4
Clacu08g1864 . 31 234 HSF AT5G43840 50.5 1.5e-45 180.3
Clacu09g0731 . 30 368 HSF AT3G22830 53.4 5.1e-92 335.1
Clacu07g0047 . 16 350 HSF AT3G22830 50.9 6.5e-87 318.2
Clacu08g1864 . 31 253 HSF AT3G22830 54.1 2.0e-64 243.4
Clacu10g0142 . 12 242 HSF AT3G22830 55.7 2.2e-63 240.0
Clacu09g0731 . 29 343 HSF AT3G51910 50.9 2.0e-71 266.2
Clacu07g0047 . 26 322 HSF AT3G51910 52.5 8.2e-70 260.8
Clacu08g1864 . 31 223 HSF AT3G51910 56.0 4.8e-54 208.4
Clacu07g0047 . 27 321 HSF AT3G63350 50.3 4.4e-66 248.4
Clacu08g1864 . 31 230 HSF AT3G63350 52.5 3.4e-50 195.7
Clacu02g1871 . 5 140 HSF AT3G63350 56.6 3.0e-38 156.0
Clacu11g0317 . 32 248 HSF AT5G54070 51.4 2.5e-52 203.0
Clacu01g1752 . 46 337 HSF AT4G36990 51.8 2.3e-70 262.7
Clacu08g1762 . 17 115 HSF AT5G62020 67.7 1.8e-38 156.8
Clacu01g0304 . 64 385 HSF AT4G11660 51.9 7.9e-79 291.2
Clacu08g1762 . 16 121 HSF AT4G11660 71.7 3.7e-44 176.0
Clacu01g1752 . 46 148 HSF AT4G11660 72.8 1.7e-41 167.2
Clacu03g1284 . 26 125 HSF AT4G11660 68.0 1.0e-38 157.9
Clacu10g0142 . 33 126 HSF AT4G11660 69.1 1.7e-36 150.6
Clacu10g1561 . 14 222 HSF AT2G41690 53.6 9.1e-52 200.7
Clacu04g0365 . 7 214 HSF AT2G41690 51.0 2.5e-49 192.6
Clacu08g1762 . 9 372 HSF AT1G46264 52.9 2.0e-89 326.2
Clacu05g2195 . 1 238 HSF AT1G46264 63.8 2.0e-81 299.7
Clacu03g1284 . 25 206 HSF AT1G46264 51.9 2.9e-51 199.5
Clacu10g0142 . 33 138 HSF AT1G46264 73.6 3.5e-41 166.0
Clacu02g1871 . 5 115 HSF AT1G46264 63.1 4.0e-37 152.5
Clacu10g1561 . 21 118 HSF AT1G46264 68.4 6.9e-37 151.8
Clacu06g0912 . 9 142 HSF AT3G24520 64.9 3.8e-45 179.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009917 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 0 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47602 PF00447 HSF_DNA-bind 5.40E-30 CL0123 Clacu TF