Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0372 ATGCTCTCTGGGTTTTCACAGGAACCGGCCGGAATGTACTCGGCCATTCCGGCGCTGCCGATGGACAGCGGCGGCGGTAAGTTTCAGGGTTCTTTAGATGGAACGAATCTTCCCGGCGACGCTTGTTTGGTTCTCACGTCGGATCCGAAGCCGCGCCTCCGCTGGACGGCGGAGCTCCATGAACGATTCGTTGACGCCGTCACTCAGCTCGGCGGCCCCGACAAGGCAACGCCAAAAACAATTATGAGAACAATGGGAGTAAAAGGTCTCACCCTTTATCACTTAAAATCACACCTCCAGAAATATCGGCTCGGGAAGCAATCGTTCAAGGAATCAACCGAGAACTCAAAGGATGCTTCTTGCATTGCAGAAAGTCAAGAAACAAGTTCCTCGTCGTCGCCATCGTCGAGAATAATGACACAGGATCTGAATGATGGTTTCCAAGTCACGGAGGCTTTACGAGTGCAAATGGAGGTTCAAAGAAGGCTGCACGAGCAGCTGGAGGTTAATCTCTCATTTGTTCTTCTCGAACAAACCCGAATCTGTTGCGATAAATCTGAGAAAACTCACTGTTTTCCATTTTCTACTCCCTGCTTTTACTGTAAGCAGGTGCAGCGTCATCTTCAACTTCGCATTGAAGCACAAGGCAAATACTTGCAGTCGATACTCGAGCGGGCTTGTCAAGCATTGAGTGATCAGGCTGCAGCGTCCGCCGGACTCGAAGCTGCCAGAGAAGAGCTCTCTGAACTTGCAATCAAAGTCTCCAATGATTCTAAAGAGATGGCACCATTGGAGACTCAAAAAGTGCTTCCCTTTTCAGAACTTGCTGCTGCTCTAGAAAATCGAAAGGCTCCTACTGTTATGCCTCGAATAGGCGATTGCTCGATGGATAGCTGCCTGACATCAGCTGGTAGCCCAGTTTCCCCAATCAGAGTAGGCTCAACTGCCACCGCAATGAAGAGACCGAGACCAGTTTTTAGTCATGGAGATTCAATGACTCTCGAGGGCAATGCCCGACACGATGTTGAATGGATGATGAGTAATATTGGATGA 1053 49.48 MLSGFSQEPAGMYSAIPALPMDSGGGKFQGSLDGTNLPGDACLVLTSDPKPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQSFKESTENSKDASCIAESQETSSSSSPSSRIMTQDLNDGFQVTEALRVQMEVQRRLHEQLEVNLSFVLLEQTRICCDKSEKTHCFPFSTPCFYCKQVQRHLQLRIEAQGKYLQSILERACQALSDQAAASAGLEAAREELSELAIKVSNDSKEMAPLETQKVLPFSELAAALENRKAPTVMPRIGDCSMDSCLTSAGSPVSPIRVGSTATAMKRPRPVFSHGDSMTLEGNARHDVEWMMSNIG 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3194446 3198188 - ClG42_05g0037200.10 Clacu05g0372 248119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0372 350 Gene3D - 49 107 - -
Clacu05g0372 350 Pfam Myb-like DNA-binding domain 52 103 IPR001005 -
Clacu05g0372 350 MobiDBLite consensus disorder prediction 115 139 - -
Clacu05g0372 350 NCBIfam myb-like DNA-binding domain, SHAQKYF class 50 105 IPR006447 GO:0003677(InterPro)
Clacu05g0372 350 FunFam Myb family transcription factor 49 107 - -
Clacu05g0372 350 Pfam MYB-CC type transfactor, LHEQLE motif 148 169 IPR025756 -
Clacu05g0372 350 Pfam MYB-CC type transfactor, LHEQLE motif 204 228 IPR025756 -
Clacu05g0372 350 Coils Coil 240 260 - -
Clacu05g0372 350 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 28 314 IPR046955 GO:0003700(InterPro)
Clacu05g0372 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 47 107 IPR017930 -
Clacu05g0372 350 SUPERFAMILY Homeodomain-like 50 107 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2176 Clacu-Chr1:33198078 Clacu05g0372 Clacu-Chr5:3194446 3.70E-42 dispersed
Clacu05g0372 Clacu-Chr5:3194446 Clacu09g2308 Clacu-Chr9:37762287 2.80E-38 dispersed
Clacu05g0372 Clacu-Chr5:3194446 Clacu02g1922 Clacu-Chr2:32774216 1.50E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47603 PF00249 Myb_DNA-binding 2.20E-07 CL0123 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0372 - - - 0.0