Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0377 ATGGAGAAAGACGATAACTACTCGAACGAAGCTGGTATGCCTCCAAGTTTCTCCAGCCACCAAGATCTCTACAATAACCAAGACCAATTCATGAGGTCTCGCCCCTTCGAAACCTCCGCCGACAATGCCACCGGAATCCTCACCTACTTTCCGGCCAACCCTCCGCCGCTGCAGCCAATAACCTCTCCGGACAAGCTCAGCTTTGCCGAGGTTATGCAGTTCGCCGACTTCGGTCCGAAACTCAGTCTCAACCGATTCGACGAGGACGACGAACCTCCCGGTATCGACCCGGTCTATTTCCTGAAGTTCCCGGTTCTGAATAACGAGAGGGCGGAGGAGGCGGCGGCGGCCGGGGAGGAGGAAGCAGCGGAGACGGGAGGGAGATTAATTGTTGGGGAATTAGAGGAGGAGGATAATTTTAGGAATAATAATAATATTAATAATAACGTTAATAATAATAATAATAATAATAATAATAATAATAATAAAAGGAAAAGAGGACGGACGGTGAAGACAAGTGAAGAAGTGGAGAGCCAAAGGATGACCCATATTGCGGTGGAGAGAAATCGAAGAAAGCAGATGAATGAGCATCTCCGGGTTTTGCGCTCTCTCATGCCTGGTTCTTACGTTCAAAGGGGAGATCAAGCTTCCATAATCGGCGGAGCAATCGAGTTCGTGAGAGAGCTAGAGCAACTGTTGCAGTGTCTAGAATCCCAAAAACGACGTCGTGTATTAGGAGAACCACCACTGGTGCAGGGGGCGGACACACCGGCGTCGCAGCAACCACCATTTGTACCGGGTAATTTTCCAGGTCATCAAAACGAGGGGCAAATATTAGAAACGACAGCGGAGAGTAAATCATGCCTGGCTGACGTGGAAGTGAAGGTGGTAGGGTTCGACGCTATGATAAAAATCTTGTCGAGAAGACGACCGGGGCAGCTGATTAAAGCCATCGCCGCTCTCGAAGATCTTCAACTAAATATTCTTCATACAAATATCACCACCATTGAACAGACTGTTCTTTATTCTTTCAACGTCAAGATAGCAAGTGAGTCAAGATTTACAGCAGAAGATATAGCGAGCTCAGTTCAACAAATATTCGGTTTTATTCATGCAAACACCGGCATGTGA 1131 47.48 MEKDDNYSNEAGMPPSFSSHQDLYNNQDQFMRSRPFETSADNATGILTYFPANPPPLQPITSPDKLSFAEVMQFADFGPKLSLNRFDEDDEPPGIDPVYFLKFPVLNNERAEEAAAAGEEEAAETGGRLIVGELEEEDNFRNNNNINNNVNNNNNNNNNNNNKRKRGRTVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRVLGEPPLVQGADTPASQQPPFVPGNFPGHQNEGQILETTAESKSCLADVEVKVVGFDAMIKILSRRRPGQLIKAIAALEDLQLNILHTNITTIEQTVLYSFNVKIASESRFTAEDIASSVQQIFGFIHANTGM 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3232928 3238168 - ClG42_05g0037700.10 Clacu05g0377 248124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0377 376 MobiDBLite consensus disorder prediction 141 163 - -
Clacu05g0377 376 CDD bHLH_AtFAMA_like 181 249 - -
Clacu05g0377 376 ProSiteProfiles ACT domain profile. 302 376 IPR002912 -
Clacu05g0377 376 MobiDBLite consensus disorder prediction 11 27 - -
Clacu05g0377 376 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 178 248 IPR036638 GO:0046983(InterPro)
Clacu05g0377 376 PANTHER TRANSCRIPTION FACTOR FAMA 104 368 IPR044283 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010052(InterPro)|GO:0010374(PANTHER)|GO:0045893(PANTHER)
Clacu05g0377 376 FunFam Basic helix-loop-helix transcription factor 169 244 - -
Clacu05g0377 376 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 178 229 IPR011598 GO:0046983(InterPro)
Clacu05g0377 376 SMART finulus 184 235 IPR011598 GO:0046983(InterPro)
Clacu05g0377 376 MobiDBLite consensus disorder prediction 139 181 - -
Clacu05g0377 376 MobiDBLite consensus disorder prediction 1 27 - -
Clacu05g0377 376 CDD ACT_UUR-ACR-like 302 366 - -
Clacu05g0377 376 Gene3D - 176 245 IPR036638 GO:0046983(InterPro)
Clacu05g0377 376 MobiDBLite consensus disorder prediction 167 181 - -
Clacu05g0377 376 Pfam Helix-loop-helix DNA-binding domain 179 230 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0002 Clacu-Chr5:240719 Clacu05g0377 Clacu-Chr5:3232928 2.00E-42 dispersed
Clacu05g0377 Clacu-Chr5:3232928 Clacu05g0629 Clacu-Chr5:5216421 8.80E-38 dispersed
Clacu05g0377 Clacu-Chr5:3232928 Clacu08g1291 Clacu-Chr8:22829926 3.90E-38 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47604 PF00010 HLH 7.70E-10 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0377 K26213 - csv:101214530 589.726