Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu05g0377 | ATGGAGAAAGACGATAACTACTCGAACGAAGCTGGTATGCCTCCAAGTTTCTCCAGCCACCAAGATCTCTACAATAACCAAGACCAATTCATGAGGTCTCGCCCCTTCGAAACCTCCGCCGACAATGCCACCGGAATCCTCACCTACTTTCCGGCCAACCCTCCGCCGCTGCAGCCAATAACCTCTCCGGACAAGCTCAGCTTTGCCGAGGTTATGCAGTTCGCCGACTTCGGTCCGAAACTCAGTCTCAACCGATTCGACGAGGACGACGAACCTCCCGGTATCGACCCGGTCTATTTCCTGAAGTTCCCGGTTCTGAATAACGAGAGGGCGGAGGAGGCGGCGGCGGCCGGGGAGGAGGAAGCAGCGGAGACGGGAGGGAGATTAATTGTTGGGGAATTAGAGGAGGAGGATAATTTTAGGAATAATAATAATATTAATAATAACGTTAATAATAATAATAATAATAATAATAATAATAATAATAAAAGGAAAAGAGGACGGACGGTGAAGACAAGTGAAGAAGTGGAGAGCCAAAGGATGACCCATATTGCGGTGGAGAGAAATCGAAGAAAGCAGATGAATGAGCATCTCCGGGTTTTGCGCTCTCTCATGCCTGGTTCTTACGTTCAAAGGGGAGATCAAGCTTCCATAATCGGCGGAGCAATCGAGTTCGTGAGAGAGCTAGAGCAACTGTTGCAGTGTCTAGAATCCCAAAAACGACGTCGTGTATTAGGAGAACCACCACTGGTGCAGGGGGCGGACACACCGGCGTCGCAGCAACCACCATTTGTACCGGGTAATTTTCCAGGTCATCAAAACGAGGGGCAAATATTAGAAACGACAGCGGAGAGTAAATCATGCCTGGCTGACGTGGAAGTGAAGGTGGTAGGGTTCGACGCTATGATAAAAATCTTGTCGAGAAGACGACCGGGGCAGCTGATTAAAGCCATCGCCGCTCTCGAAGATCTTCAACTAAATATTCTTCATACAAATATCACCACCATTGAACAGACTGTTCTTTATTCTTTCAACGTCAAGATAGCAAGTGAGTCAAGATTTACAGCAGAAGATATAGCGAGCTCAGTTCAACAAATATTCGGTTTTATTCATGCAAACACCGGCATGTGA | 1131 | 47.48 | MEKDDNYSNEAGMPPSFSSHQDLYNNQDQFMRSRPFETSADNATGILTYFPANPPPLQPITSPDKLSFAEVMQFADFGPKLSLNRFDEDDEPPGIDPVYFLKFPVLNNERAEEAAAAGEEEAAETGGRLIVGELEEEDNFRNNNNINNNVNNNNNNNNNNNNKRKRGRTVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRVLGEPPLVQGADTPASQQPPFVPGNFPGHQNEGQILETTAESKSCLADVEVKVVGFDAMIKILSRRRPGQLIKAIAALEDLQLNILHTNITTIEQTVLYSFNVKIASESRFTAEDIASSVQQIFGFIHANTGM | 376 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 3232928 | 3238168 | - | ClG42_05g0037700.10 | Clacu05g0377 | 248124 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu05g0377 | 376 | MobiDBLite | consensus disorder prediction | 141 | 163 | - | - | |
Clacu05g0377 | 376 | CDD | bHLH_AtFAMA_like | 181 | 249 | - | - | |
Clacu05g0377 | 376 | ProSiteProfiles | ACT domain profile. | 302 | 376 | IPR002912 | - | |
Clacu05g0377 | 376 | MobiDBLite | consensus disorder prediction | 11 | 27 | - | - | |
Clacu05g0377 | 376 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 178 | 248 | IPR036638 | GO:0046983(InterPro) | |
Clacu05g0377 | 376 | PANTHER | TRANSCRIPTION FACTOR FAMA | 104 | 368 | IPR044283 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010052(InterPro)|GO:0010374(PANTHER)|GO:0045893(PANTHER) | |
Clacu05g0377 | 376 | FunFam | Basic helix-loop-helix transcription factor | 169 | 244 | - | - | |
Clacu05g0377 | 376 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 178 | 229 | IPR011598 | GO:0046983(InterPro) | |
Clacu05g0377 | 376 | SMART | finulus | 184 | 235 | IPR011598 | GO:0046983(InterPro) | |
Clacu05g0377 | 376 | MobiDBLite | consensus disorder prediction | 139 | 181 | - | - | |
Clacu05g0377 | 376 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Clacu05g0377 | 376 | CDD | ACT_UUR-ACR-like | 302 | 366 | - | - | |
Clacu05g0377 | 376 | Gene3D | - | 176 | 245 | IPR036638 | GO:0046983(InterPro) | |
Clacu05g0377 | 376 | MobiDBLite | consensus disorder prediction | 167 | 181 | - | - | |
Clacu05g0377 | 376 | Pfam | Helix-loop-helix DNA-binding domain | 179 | 230 | IPR011598 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu05g0002 | Clacu-Chr5:240719 | Clacu05g0377 | Clacu-Chr5:3232928 | 2.00E-42 | dispersed | |
Clacu05g0377 | Clacu-Chr5:3232928 | Clacu05g0629 | Clacu-Chr5:5216421 | 8.80E-38 | dispersed | |
Clacu05g0377 | Clacu-Chr5:3232928 | Clacu08g1291 | Clacu-Chr8:22829926 | 3.90E-38 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
47604 | PF00010 | HLH | 7.70E-10 | No_clan | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu05g0377 | K26213 | - | csv:101214530 | 589.726 |