Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0379 ATGGGTAGCGGAGAAAAGGTTTTCACCTTGAAGGAAGTCGCTGAGCACAACAATCACAAGGACTGTTGGCTCATCATCAGTGGCAAGGTATATGATGTGACCAAGTTCTTAGAGGACCATCCTGGTGGTGACGATGTTTTGTTATCAGCTACAGGAAAAGATGCAACCGACGACTTTGAAGACGTGGGCCACAGTGACAATGCAAGAGAGATGATGGATCAATACTATGTTGGGGAGATTGATGCTTCAACAATTCCAAAGAAGGTTGCCTACACACCTCCAAAGCAGCCTCATTACAATCAGGACAAGACATCCGAGTTCATCATCAAGCTTCTCCAATTCCTCGTCCCGCTTGCAATTTTGGGATTGGCAGTTGCCATACGCTTCTACACCAAACAAGCTTGA 405 45.93 MGSGEKVFTLKEVAEHNNHKDCWLIISGKVYDVTKFLEDHPGGDDVLLSATGKDATDDFEDVGHSDNAREMMDQYYVGEIDASTIPKKVAYTPPKQPHYNQDKTSEFIIKLLQFLVPLAILGLAVAIRFYTKQA 134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3246844 3249209 + ClG42_05g0037900.10 Clacu05g0379 248126

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0379 134 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
Clacu05g0379 134 SMART Cyt_b5_2 8 81 IPR001199 -
Clacu05g0379 134 FunFam Cytochrome b5 type B 3 85 - -
Clacu05g0379 134 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037(InterPro)
Clacu05g0379 134 Pfam Cytochrome b5-like Heme/Steroid binding domain 9 80 IPR001199 -
Clacu05g0379 134 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 6 90 IPR036400 -
Clacu05g0379 134 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
Clacu05g0379 134 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
Clacu05g0379 134 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
Clacu05g0379 134 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
Clacu05g0379 134 PANTHER CYTOCHROME B5 5 131 IPR050668 GO:0005783(PANTHER)|GO:0016020(PANTHER)|GO:0020037(PANTHER)|GO:0043231(PANTHER)
Clacu05g0379 134 Gene3D - 2 86 IPR036400 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0379 K23490 - - csv:101214209 275.404
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0023 Clacu-Chr1:235846 Clacu05g0379 Clacu-Chr5:3246844 2.20E-47 dispersed
Clacu05g0057 Clacu-Chr5:816252 Clacu05g0379 Clacu-Chr5:3246844 4.40E-36 dispersed
Clacu05g0379 Clacu-Chr5:3246844 Clacu11g0355 Clacu-Chr11:3210267 8.30E-15 dispersed
Clacu06g0277 Clacu-Chr6:3350116 Clacu05g0379 Clacu-Chr5:3246844 4.10E-30 transposed
Clacu06g0331 Clacu-Chr6:4032570 Clacu05g0379 Clacu-Chr5:3246844 2.20E-09 transposed
Clacu08g1204 Clacu-Chr8:21965189 Clacu05g0379 Clacu-Chr5:3246844 9.20E-27 transposed
Clacu05g0379 Clacu-Chr5:3246844 Clacu06g0801 Clacu-Chr6:9626866 7.90E-58 wgd
Clacu05g0379 Clacu-Chr5:3246844 Clacu07g0185 Clacu-Chr7:2289883 4.60E-50 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu05g0379 . 1 133 NADPH P450 reductases AT5G53560 68.4 1.5e-51 199.1
Clacu01g0023 . 23 138 NADPH P450 reductases AT5G53560 78.4 5.5e-51 197.2
Clacu06g0801 . 1 133 NADPH P450 reductases AT5G53560 64.7 9.7e-48 186.4
Clacu07g0185 . 4 131 NADPH P450 reductases AT5G53560 62.5 1.0e-44 176.4
Clacu05g0379 . 1 132 NADPH P450 reductases AT5G48810 64.9 7.8e-48 186.8
Clacu06g0801 . 1 133 NADPH P450 reductases AT5G48810 60.7 3.3e-46 181.4
Clacu07g0185 . 2 132 NADPH P450 reductases AT5G48810 62.4 2.1e-45 178.7
Clacu01g0023 . 23 138 NADPH P450 reductases AT5G48810 61.9 2.1e-40 162.2
Clacu05g0379 . 22 133 NADPH P450 reductases AT2G32720 84.8 7.2e-51 196.8
Clacu06g0801 . 22 133 NADPH P450 reductases AT2G32720 78.6 1.4e-46 182.6
Clacu07g0185 . 21 132 NADPH P450 reductases AT2G32720 71.4 8.0e-42 166.8
Clacu01g0023 . 18 137 NADPH P450 reductases AT2G32720 65.0 8.8e-41 163.3
Clacu08g1204 . 1 130 NADPH P450 reductases AT1G26340 55.6 7.1e-38 153.7
Clacu04g0547 . 2 281 NADPH P450 reductases AT5G17770 81.4 1.5e-130 462.6
Clacu10g1653 . 2 280 NADPH P450 reductases AT5G17770 78.1 7.6e-127 450.3
Clacu02g2473 . 10 282 NADPH P450 reductases AT5G17770 73.3 3.5e-116 414.8
Clacu05g0379 . 1 133 NADPH P450 reductases AT5G53560 68.4 1.5e-51 199.1
Clacu01g0023 . 23 138 NADPH P450 reductases AT5G53560 78.4 5.5e-51 197.2
Clacu06g0801 . 1 133 NADPH P450 reductases AT5G53560 64.7 9.7e-48 186.4
Clacu07g0185 . 4 131 NADPH P450 reductases AT5G53560 62.5 1.0e-44 176.4
Clacu05g0379 . 1 132 NADPH P450 reductases AT5G48810 64.9 7.8e-48 186.8
Clacu06g0801 . 1 133 NADPH P450 reductases AT5G48810 60.7 3.3e-46 181.4
Clacu07g0185 . 2 132 NADPH P450 reductases AT5G48810 62.4 2.1e-45 178.7
Clacu01g0023 . 23 138 NADPH P450 reductases AT5G48810 61.9 2.1e-40 162.2
Clacu05g0379 . 22 133 NADPH P450 reductases AT2G32720 84.8 7.2e-51 196.8
Clacu06g0801 . 22 133 NADPH P450 reductases AT2G32720 78.6 1.4e-46 182.6
Clacu07g0185 . 21 132 NADPH P450 reductases AT2G32720 71.4 8.0e-42 166.8
Clacu01g0023 . 18 137 NADPH P450 reductases AT2G32720 65.0 8.8e-41 163.3
Clacu08g1204 . 1 130 NADPH P450 reductases AT1G26340 55.6 7.1e-38 153.7
Clacu04g0547 . 2 281 NADPH P450 reductases AT5G17770 81.4 1.5e-130 462.6
Clacu10g1653 . 2 280 NADPH P450 reductases AT5G17770 78.1 7.6e-127 450.3
Clacu02g2473 . 10 282 NADPH P450 reductases AT5G17770 73.3 3.5e-116 414.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000252 4 9 3 5 3 5 9 4 4 3 4 4 8 5 5 9 5 6 9 4 5 4 5 5 4 4 4 10 5 2 156