Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0379 ATGGGTAGCGGAGAAAAGGTTTTCACCTTGAAGGAAGTCGCTGAGCACAACAATCACAAGGACTGTTGGCTCATCATCAGTGGCAAGGTATATGATGTGACCAAGTTCTTAGAGGACCATCCTGGTGGTGACGATGTTTTGTTATCAGCTACAGGAAAAGATGCAACCGACGACTTTGAAGACGTGGGCCACAGTGACAATGCAAGAGAGATGATGGATCAATACTATGTTGGGGAGATTGATGCTTCAACAATTCCAAAGAAGGTTGCCTACACACCTCCAAAGCAGCCTCATTACAATCAGGACAAGACATCCGAGTTCATCATCAAGCTTCTCCAATTCCTCGTCCCGCTTGCAATTTTGGGATTGGCAGTTGCCATACGCTTCTACACCAAACAAGCTTGA 405 45.93 MGSGEKVFTLKEVAEHNNHKDCWLIISGKVYDVTKFLEDHPGGDDVLLSATGKDATDDFEDVGHSDNAREMMDQYYVGEIDASTIPKKVAYTPPKQPHYNQDKTSEFIIKLLQFLVPLAILGLAVAIRFYTKQA 134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3246844 3249209 + ClG42_05g0037900.10 Clacu05g0379 248126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0379 134 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
Clacu05g0379 134 SMART Cyt_b5_2 8 81 IPR001199 -
Clacu05g0379 134 FunFam Cytochrome b5 type B 3 85 - -
Clacu05g0379 134 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037(InterPro)
Clacu05g0379 134 Pfam Cytochrome b5-like Heme/Steroid binding domain 9 80 IPR001199 -
Clacu05g0379 134 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 6 90 IPR036400 -
Clacu05g0379 134 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
Clacu05g0379 134 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
Clacu05g0379 134 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
Clacu05g0379 134 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
Clacu05g0379 134 PANTHER CYTOCHROME B5 5 131 IPR050668 GO:0005783(PANTHER)|GO:0016020(PANTHER)|GO:0020037(PANTHER)|GO:0043231(PANTHER)
Clacu05g0379 134 Gene3D - 2 86 IPR036400 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0023 Clacu-Chr1:235846 Clacu05g0379 Clacu-Chr5:3246844 2.20E-47 dispersed
Clacu05g0057 Clacu-Chr5:816252 Clacu05g0379 Clacu-Chr5:3246844 4.40E-36 dispersed
Clacu05g0379 Clacu-Chr5:3246844 Clacu11g0355 Clacu-Chr11:3210267 8.30E-15 dispersed
Clacu06g0277 Clacu-Chr6:3350116 Clacu05g0379 Clacu-Chr5:3246844 4.10E-30 transposed
Clacu06g0331 Clacu-Chr6:4032570 Clacu05g0379 Clacu-Chr5:3246844 2.20E-09 transposed
Clacu08g1204 Clacu-Chr8:21965189 Clacu05g0379 Clacu-Chr5:3246844 9.20E-27 transposed
Clacu05g0379 Clacu-Chr5:3246844 Clacu06g0801 Clacu-Chr6:9626866 7.90E-58 wgd
Clacu05g0379 Clacu-Chr5:3246844 Clacu07g0185 Clacu-Chr7:2289883 4.60E-50 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0379 K23490 - csv:101214209 275.404