Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0400 ATGGCAATGGCGGAATCTGGAGGATGGATTCGTTTGTTTCTCCTCGTGGTGTTCATGTTGTTCGTCGGAACAATTGCCAGAGTTCCCAAAGAGATTCCTGAAATTGAGAATGGAGCAGCTGAGAAGTTGCAGAGCTCAAGCAACTCATCAATGGCAGTGAGGTTGGAAGAGGCTGAGGCTGAGGCTCTCGATAATAAGCATGCTGTGGACAACCCAGAAGAGATCGCTGCTATGGTTGACATGAGTATCCGCAATGCCACTGCGAGGAGGGAGCTTGGCTTCTTCTCTTGTGGAACCGGCAATCCTGTTGATGACTGCTGGCGTTGCGACCCCAATTGGCAACAAAACCGCAAACGTCTGGCAGATTGTGGCATTGGCTTTGGCCGGAATGCCATCGGTGGTCGTGATGGTCGATTCTACGTCGTCACTGACTCCGGCGACGATGACCCTGTAAACCCAAAGCCTGGCACTTTGCGACATGCCGTTATCCAGGATGAACCTCTCTGGATTGTGTTCAAGAGAGACATGGTGATTCAGCTGAAACAAGAGCTGATTATGAACAGTTTCAAGACAATTGATGCCCGTGGGACCAATGTCCACATTGCTAATGGTGCTTGCATAACAATCCAGTTTGTGACCAATGTCATTGTCCATGGTCTAAACATCCATGACTGCAAACCCACTGGAAACGCCATGGTAAGGAGCTCACCCAATCACGTTGGGTGGAGAACAATGGCTGATGGTGATGCTATTTCCATTTTCGGATCAAGTCATATTTGGATCGATCACAATTCACTCTCTAATTGTGCTGATGGCCTCGTTGATGCTGTCATGGGATCCACTGCAATTACCATCACCAACAATTACTTCACCCACCACAATGAGGTTATGTTATTGGGACATAGTGATTCTTACGTTAGAGATAAACAAATGCAAGTGACCATCGCTTACAATCACTTTGGAGAAGGACTCATCCAAAGAATGCCAAGGTGTAGACACGGATACTTCCATGTGGTGAACAATGATTATACTCACTGGGAGATGTACGCCATTGGTGGAAGTGCAAATCCAACCATCAATAGCCAGGGTAACAGATATGCTGCTCCAACCAACCCTTTTGCTAAAGAGGTGACAAAGAGAGTTGAAACAGCTGAAACTGAATGGAAAAATTGGAATTGGAGATCAGAGGGAGACCTATTGTTGAATGGTGCCTTTTTCACTCCATCTGGTGCAGGGGCCTCAGCAAGCTATGCTAGAGCCTCAAGCTTGGGAGCTAAATCTTCGTCCATGGTTGGTACTATAACATCCAACGCCGGTGCACTTTCCTGCCGGAGAGGCCATCCATGCTAG 1350 47.56 MAMAESGGWIRLFLLVVFMLFVGTIARVPKEIPEIENGAAEKLQSSSNSSMAVRLEEAEAEALDNKHAVDNPEEIAAMVDMSIRNATARRELGFFSCGTGNPVDDCWRCDPNWQQNRKRLADCGIGFGRNAIGGRDGRFYVVTDSGDDDPVNPKPGTLRHAVIQDEPLWIVFKRDMVIQLKQELIMNSFKTIDARGTNVHIANGACITIQFVTNVIVHGLNIHDCKPTGNAMVRSSPNHVGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITITNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPTNPFAKEVTKRVETAETEWKNWNWRSEGDLLLNGAFFTPSGAGASASYARASSLGAKSSSMVGTITSNAGALSCRRGHPC 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3446645 3451261 + ClG42_05g0040000.10 Clacu05g0400 248147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0400 449 SUPERFAMILY Pectin lyase-like 77 444 IPR011050 -
Clacu05g0400 449 PRINTS Pollen allergen Amb family signature 349 368 IPR018082 -
Clacu05g0400 449 PRINTS Pollen allergen Amb family signature 147 172 IPR018082 -
Clacu05g0400 449 PRINTS Pollen allergen Amb family signature 247 268 IPR018082 -
Clacu05g0400 449 PRINTS Pollen allergen Amb family signature 123 140 IPR018082 -
Clacu05g0400 449 PRINTS Pollen allergen Amb family signature 420 443 IPR018082 -
Clacu05g0400 449 PRINTS Pollen allergen Amb family signature 183 199 IPR018082 -
Clacu05g0400 449 PRINTS Pollen allergen Amb family signature 327 346 IPR018082 -
Clacu05g0400 449 PRINTS Pollen allergen Amb family signature 391 415 IPR018082 -
Clacu05g0400 449 SMART amb_all 175 372 IPR002022 -
Clacu05g0400 449 PANTHER PECTATE LYASE 18-RELATED 22 446 IPR045032 GO:0030570(InterPro)
Clacu05g0400 449 FunFam Pectate lyase 100 442 - -
Clacu05g0400 449 Gene3D - 100 442 IPR012334 -
Clacu05g0400 449 Pfam Pectate lyase 186 364 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g1317 Clacu-Chr4:27068208 Clacu05g0400 Clacu-Chr5:3446645 6.10E-79 dispersed
Clacu05g0400 Clacu-Chr5:3446645 Clacu05g2323 Clacu-Chr5:31579650 2.60E-153 dispersed
Clacu03g0334 Clacu-Chr3:3829960 Clacu05g0400 Clacu-Chr5:3446645 4.00E-177 transposed
Clacu08g1907 Clacu-Chr8:28244138 Clacu05g0400 Clacu-Chr5:3446645 5.60E-173 transposed
Clacu09g1989 Clacu-Chr9:34755578 Clacu05g0400 Clacu-Chr5:3446645 5.30E-169 transposed
Clacu05g0400 Clacu-Chr5:3446645 Clacu06g0789 Clacu-Chr6:9323202 2.00E-214 wgd
Clacu05g0400 Clacu-Chr5:3446645 Clacu07g0161 Clacu-Chr7:2073726 1.40E-204 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0400 K01728 - csv:101218188 850.121