Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0413 ATGTCTTTCCTTGAAGAATTTCAAGCCAACCTGGAATCACTACCCAACATTCTTCAAAAGAAGTATGCTTTGCTGCGTGATTTAGATCAAAGTTTGCAAGGACTAGTAAAACAGAATGAGCAACGCTGTGAGCAAGAAATTGAGGATATTAAGCGGGGAGTTAAATGTGGTAATATTACTCCTGATACTTCACTCATCAGATTCTCCGATGAAGCTCTTGATGAGCAGAAGCATAGCATCAGAATTGCAGATGAAAAGGTTGCCCTTGCTGTTCAGGCATATGATTTGGTAGATACCCACATACAACAACTTGACCAGTATTTGAAGAATTTTGATGAAAAGCTTCGTCAAGAAAGAGGAAGTGCTGCTGCAACTGGGTTACCAGCTCCCAATGTGGATGGTAACACAAAATCTGGACGGGTAACAGAAGGTGGTAGAGGCGGGCGTAAAAAAAGAAGTGGCCAGGCTGCTGCTACAGAAGTACCAACTGCTGCAACTCCCACAGGAATGGAACTTGAATTACCAGTTGATCCAAATGAACCAACTTACTGTCTCTGCAACCAAGTTAGTTACGGGGAGATGGTTGCCTGTGATAACCCTAATTGCAAGATTGAATGGTTTCATTTTGGCTGTGTCGGTCTAAAAGAACAACCAAAAGGAAAATGGTACTGTTCTGATTGTGTAGGCACGAAAGAAAGCAATCTAGAAGATCCTCCATTAAAGATGGAAGAAGTGAAACTCCATGGGATGTGGGCAAGTCCTTTTACTTACAGAGTGAAATGGGGTTTGGAGCTTAAGGGCATACCATACCAATACGTAGAAGAAGATATCACCAACAAATCTCCATTGCTGCTTCACTACAATCCTCTTCACAAGAAGGTTCCTGTGCTCGTTCATGGCGGAAAACCAGTGTGCGAGTCCATCGTCATCCTCGAATACATGGATGAAATATGGCCTCAATATCCTCTCTTTCCAATCAATCCCTTCGATAGAGCAATGGCTCGCTTTTGGATTAAATATACAGACAACAAGGTCCTTTTTTAA 1044 42.24 MSFLEEFQANLESLPNILQKKYALLRDLDQSLQGLVKQNEQRCEQEIEDIKRGVKCGNITPDTSLIRFSDEALDEQKHSIRIADEKVALAVQAYDLVDTHIQQLDQYLKNFDEKLRQERGSAAATGLPAPNVDGNTKSGRVTEGGRGGRKKRSGQAAATEVPTAATPTGMELELPVDPNEPTYCLCNQVSYGEMVACDNPNCKIEWFHFGCVGLKEQPKGKWYCSDCVGTKESNLEDPPLKMEEVKLHGMWASPFTYRVKWGLELKGIPYQYVEEDITNKSPLLLHYNPLHKKVPVLVHGGKPVCESIVILEYMDEIWPQYPLFPINPFDRAMARFWIKYTDNKVLF 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3540146 3544687 + ClG42_05g0041300.10 Clacu05g0413 248160

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0413 347 MobiDBLite consensus disorder prediction 120 166 - -
Clacu05g0413 347 CDD GST_N_Tau 245 318 - -
Clacu05g0413 347 SMART PHD_3 183 228 IPR001965 -
Clacu05g0413 347 ProSiteProfiles Zinc finger PHD-type profile. 181 230 IPR019787 -
Clacu05g0413 347 Gene3D Glutaredoxin 240 326 - -
Clacu05g0413 347 SMART ING_2 3 111 IPR024610 -
Clacu05g0413 347 SUPERFAMILY FYVE/PHD zinc finger 165 228 IPR011011 -
Clacu05g0413 347 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 175 230 IPR013083 -
Clacu05g0413 347 PANTHER INHIBITOR OF GROWTH PROTEIN 3 124 IPR028651 GO:0005634(PANTHER)|GO:0035064(PANTHER)
Clacu05g0413 347 CDD PHD_Yng1p_like 183 227 - -
Clacu05g0413 347 Gene3D - 2 108 - -
Clacu05g0413 347 SFLD Main (cytGST) 245 344 - -
Clacu05g0413 347 SFLD Glutathione Transferase (cytosolic) 245 344 IPR040079 -
Clacu05g0413 347 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 243 322 IPR004045 -
Clacu05g0413 347 FunFam Tau class glutathione S-transferase 240 326 - -
Clacu05g0413 347 Pfam Glutathione S-transferase, N-terminal domain 244 316 IPR004045 -
Clacu05g0413 347 CDD ING_plant 11 108 - -
Clacu05g0413 347 FunFam Inhibitor of growth 2b 175 231 - -
Clacu05g0413 347 Pfam Inhibitor of growth proteins N-terminal histone-binding 3 111 IPR024610 -
Clacu05g0413 347 SUPERFAMILY Thioredoxin-like 245 345 IPR036249 -
Clacu05g0413 347 ProSitePatterns Zinc finger PHD-type signature. 184 227 IPR019786 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0413 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0570 Clacu-Chr4:19013412 Clacu05g0413 Clacu-Chr5:3540146 2.90E-19 dispersed
Clacu05g0413 Clacu-Chr5:3540146 Clacu05g0417 Clacu-Chr5:3557870 2.80E-46 dispersed
Clacu05g0413 Clacu-Chr5:3540146 Clacu05g0416 Clacu-Chr5:3553956 2.20E-43 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g829 . Blo12g00131 Bda03g01109 . Bpe04g01054 . Bma04g01035 . . . Cma06g01275 . Car06g01096 . . Cpe08g00372 . Bhi01g00022 . . . . . . . . . . . . . Cone14ag0202 Cone15ag0220 . . Lsi05g01798 . . Cme06g00422 . . . . . . . . . Cmo06g01284 . . . . . . . . . . . . . . Cla05g00384 Cam05g0418 Cec05g0423 Cco05g0423 Clacu05g0413 Cmu05g0396 Cre05g0458 . Csa03g01141 Chy06g00407 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004676 1 7 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 5 1 1 41