Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu05g0423 | TTTGAGCAATTCTGTATTAACCTGACCAATGAGAAATTGCAGCAACATTTCAACCAGCATGTGTTCAAGATGGAGCAAGAAGAATATACAAAAGAAGAAATTGACTGGAGTTATATTGAATTTATTGATAATCAGGATGTTCTTGATCTCATTGAGAAGAAACCTGGTGGCGTCATTGCTCTTCTGGATGAGGCTTGCATGTTCCCGAGATCCACACATGACACTTTTGCGCAGAAACTATATCAAACTTTTAAGGACCATAAGCGTTTTAGTAAGCCGAAATTGTCACGAACTGACTTCACAATTTGTCATTATGCTGGTGATGTTACGTACCAAACTGAACTCTTCTTGGACAAAAACAAAGATTATGTTGTTGCGGAGCATCAAGCACTGTTGAGTGCTTCTAAGTGCCCCTTTGTTTCGGGGCTTTTCCCCCCCTTACCTGAAGAAACCTCCAAATCATCCAAGTTCTCATCAATAGGGACTCGATTTAAGCAACAACTTCAATCTTTGCTTGAGACACTAAATGCTACTGAGCCACACTACATACGCTGTGTAAAGCCAAACAATCTTCTTAAACCAGCCATCTTTGAGAACAATAATGTTTTACAGCAGCTCCGATGTGGGGGAGTCATGGAAGCAATCAGGATCAGTTGTGCTGGATATCCCACTAGGAAGACATTTGATGAATTTATTGGTCGGTTTACTATCTTGGCGCCTGATGTTTTGAAGGGGAGCTCTAATGAAGCGACTGCGTGTAAGAGGCTTTTGGAGAAAGTGAACCTTAAAGGGTATCAGATTGGTAAAACCAAAGTGTTTCTCAGGGCTGGTCAAATGGCAGAATTAGATGCTTGCCGAACTGAGGTTTTGGGAAGATCTGCTATTGTTATCCAAAGGAAAGTTCGCTCATATTTGGGGCGCAAAAACTTTATTTTGTTGCGGTTGGCTGCTATTCAAATTCAAGCCCTGTGTAGAGGGCAAGTTGCACGCCAGCATTATGAAGACATCAGAAAGGAAGCTGCTTCTATCAAAATCCAAAAGTATTGGCGTATGCATTTTGCCCGATGTTGCTATAAAAGATTGTGCTCTTCAGCTGTAGCTATTCAAGCTGGTATCCACGGTATGATTGCCCGTAAAGAGCTTGAGTTCAGGAGGCAGACAAGAGCTGCTATTATCATTCAGAGTCGATGTCGGCAATACTTGGCCCGCATGCATTATTTGAGGATCAAAAAAGCTGCAATTACTACTCAATGTGCTTGGAGAGGAAGAGTTGCACGGAAAGAACTTCGAAAGCTTAAAATGGCTGCTAAGGAAACAGGCGCTCTCCAAGCTGCTAAAAATCTGCTGGAGAAGCAAGTGGAAGAACTAACATGGAGATTGCAGCTAGAGAAACGAATGCGGGCTGACATGGAGGAAGCCAAGACTAAAGAAAACACAAAATTGAAGGCTGATTTGGAAGAAATGAGAACTCTATTTCAGGAAACGAAAGCACTGCTTAATGAGGAACGTGAAGCTGCAATGAAAGTAGTTGAGCAAGTTCCAGTCATACAGGAGGTTCCCGTTGTTGATCATGAGCTGATCAATAAGTTAACTACTGAAAATGAACAACTTAAGGCTCTTGTAAGTACTTTGGAAAATAAAATTGATGAAACAGAAAGGAAATTTGAGGAAAGTAACAGACTTAGTGAAGAGCGTCTGAAGCAGGCTACGGAGGCAGAGTCAAAGATAATTGAATTAAAGACTGCCATGCAAAGGCTTGAGGAAAAATTATCTGACTTGGAAACTGAGGACCAAATTCTGAGGCAGCAAACACTGCTAAAGCCTCCTTCAAGAAAGATGTCTGGACGCATAGCAATGCAGCCTTTGGAAAATGGCCACCATGAATTACTAAGCAACGCTCCATCAAAAAAGTACGGTACTGATGCTGATGCAAAATTGAGGAGATCCCAAATTGAAAGGCAGAATGAAGGCATGGATGCTCTGTCAAAATACCTGACACAGGATCTTGGATACAGTGAGGGAAAACCTGTTGCTGCTTTTGTAATTTATAAATCTTTTCTCCATTGGAGATCATTTGAAGCAGAAAAAACAAGTGTTTTTGATCGGCTTATTCAGCTGATTGGTTCTGCAATCGAGAATCAGGATGATAATGATCTTATGACCTATTGGTTATCCAACACAACTACATTGTTGTTCCTTCTTCAAAAGAGTTTAAAAACCACACCACGGAAGCCTCCCACCCCTACATCATTTTTTGAGCGGATGACCCAAGGTTTTCGGTCATCTTCTGCCCTTCCAGTTGGCACCCTTGATGTGGTGCGGCAAGTGGAAGCCAAATATCCTGCCCTACTTTTCAAGCAGCAGCTAACCGCATATGTAGAAAAGATATATGGAATAGTTAGAGACAACCTAAAGAAGGAACTATCGCCATTGATTTCAACTTGTATTCAGGCTCCCAGATCTTCGAGAGGAAATATTTTGAAATCATCTGGCCAGGAAAATAGTAGTAGCCCTTCCAGTAATTCATGGAGCAGCATCATTGATAACCTTAATGATCATCTCTGTAGATTGCAAAAGAACTTTGTGCCTAACGTTTTGGTTCAGAAGATATTCACTCAGGTTTTTTCATATATCAACGTTCAACTTTTTAACAGTCTTCTACTTCGTCGAGAGTGCTGTACGTTTAGCAATGGGGAATATGTGAAGTCAGGATTGGCTGAGTTAGAGATTTGGTGTGGCCAAGCACAAGAAGAGTATGCTGGGTCATCTTGGGATGAGCTAAAACCGGTGAGGCAAGCTGTTGGATTCTTGGTTATTCACCAGAAGTCTAGAATATCTTATGATGAAATTACAAATGATCTCTGTCCAATATTGAGCGTTCAACAGCTTTATAGAATATGTACTCTTTATTGGGACGACAATTACAATACCAGGAGTGTAGCTCCAGATGTTATTTCTAGCATGAAGGTTTTGATGACTGAGGATTCCAATGATGAAGATAGTAGTTCCTTTTTGTTGGATGACAATTCCAGAATCTTCCGCTATGGTTGGGGTCGATATGTTGAGCCAGGCAAGTGGAATGGAATTTGTTTCGTAAGTATGGCACGTGAGTTATCATTGCAAATGTACTCGAATCTTACAGATCTATTGTATTGCATAATTTCTTCTACTAGTTCCTCCCCTGCCCTGAAACTGCTGATTACTAGGGTCTCAAGTCCGGAAGGAGGTGGCATACAAGGCTTGTTGAAATGGTTAAAATTCATTGATGCTTTGTGGTTAATGTCTGCCTTAGCGAGGCCCTTCCCCTTCAAAATGGTTGCACTATCAGGGTTTTAG | 3336 | 41.28 | FEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFIDNQDVLDLIEKKPGGVIALLDEACMFPRSTHDTFAQKLYQTFKDHKRFSKPKLSRTDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCPFVSGLFPPLPEETSKSSKFSSIGTRFKQQLQSLLETLNATEPHYIRCVKPNNLLKPAIFENNNVLQQLRCGGVMEAIRISCAGYPTRKTFDEFIGRFTILAPDVLKGSSNEATACKRLLEKVNLKGYQIGKTKVFLRAGQMAELDACRTEVLGRSAIVIQRKVRSYLGRKNFILLRLAAIQIQALCRGQVARQHYEDIRKEAASIKIQKYWRMHFARCCYKRLCSSAVAIQAGIHGMIARKELEFRRQTRAAIIIQSRCRQYLARMHYLRIKKAAITTQCAWRGRVARKELRKLKMAAKETGALQAAKNLLEKQVEELTWRLQLEKRMRADMEEAKTKENTKLKADLEEMRTLFQETKALLNEEREAAMKVVEQVPVIQEVPVVDHELINKLTTENEQLKALVSTLENKIDETERKFEESNRLSEERLKQATEAESKIIELKTAMQRLEEKLSDLETEDQILRQQTLLKPPSRKMSGRIAMQPLENGHHELLSNAPSKKYGTDADAKLRRSQIERQNEGMDALSKYLTQDLGYSEGKPVAAFVIYKSFLHWRSFEAEKTSVFDRLIQLIGSAIENQDDNDLMTYWLSNTTTLLFLLQKSLKTTPRKPPTPTSFFERMTQGFRSSSALPVGTLDVVRQVEAKYPALLFKQQLTAYVEKIYGIVRDNLKKELSPLISTCIQAPRSSRGNILKSSGQENSSSPSSNSWSSIIDNLNDHLCRLQKNFVPNVLVQKIFTQVFSYINVQLFNSLLLRRECCTFSNGEYVKSGLAELEIWCGQAQEEYAGSSWDELKPVRQAVGFLVIHQKSRISYDEITNDLCPILSVQQLYRICTLYWDDNYNTRSVAPDVISSMKVLMTEDSNDEDSSSFLLDDNSRIFRYGWGRYVEPGKWNGICFVSMARELSLQMYSNLTDLLYCIISSTSSSPALKLLITRVSSPEGGGIQGLLKWLKFIDALWLMSALARPFPFKMVALSGF | 1111 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 3588151 | 3609599 | - | ClG42_05g0042300.10 | Clacu05g0423 | 248170 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu05g0423 | 1111 | Pfam | DIL domain | 869 | 974 | IPR002710 | - | |
| Clacu05g0423 | 1111 | Coils | Coil | 527 | 561 | - | - | |
| Clacu05g0423 | 1111 | Gene3D | - | 389 | 437 | - | - | |
| Clacu05g0423 | 1111 | Gene3D | - | 290 | 339 | - | - | |
| Clacu05g0423 | 1111 | Gene3D | - | 340 | 388 | - | - | |
| Clacu05g0423 | 1111 | SMART | MYSc_2a | 1 | 288 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Clacu05g0423 | 1111 | FunFam | Myosin XI D | 290 | 339 | - | - | |
| Clacu05g0423 | 1111 | Pfam | Myosin head (motor domain) | 1 | 275 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Clacu05g0423 | 1111 | ProSiteProfiles | Myosin motor domain profile. | 1 | 287 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Clacu05g0423 | 1111 | Pfam | IQ calmodulin-binding motif | 292 | 310 | IPR000048 | GO:0005515(InterPro) | |
| Clacu05g0423 | 1111 | Pfam | IQ calmodulin-binding motif | 387 | 406 | IPR000048 | GO:0005515(InterPro) | |
| Clacu05g0423 | 1111 | Pfam | IQ calmodulin-binding motif | 411 | 430 | IPR000048 | GO:0005515(InterPro) | |
| Clacu05g0423 | 1111 | Pfam | IQ calmodulin-binding motif | 340 | 359 | IPR000048 | GO:0005515(InterPro) | |
| Clacu05g0423 | 1111 | Pfam | IQ calmodulin-binding motif | 316 | 333 | IPR000048 | GO:0005515(InterPro) | |
| Clacu05g0423 | 1111 | FunFam | unconventional myosin-Va | 389 | 436 | - | - | |
| Clacu05g0423 | 1111 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1 | 341 | IPR027417 | - | |
| Clacu05g0423 | 1111 | SMART | DIL_2 | 869 | 976 | IPR002710 | - | |
| Clacu05g0423 | 1111 | SMART | iq_5 | 312 | 334 | IPR000048 | GO:0005515(InterPro) | |
| Clacu05g0423 | 1111 | SMART | iq_5 | 360 | 382 | IPR000048 | GO:0005515(InterPro) | |
| Clacu05g0423 | 1111 | SMART | iq_5 | 385 | 407 | IPR000048 | GO:0005515(InterPro) | |
| Clacu05g0423 | 1111 | SMART | iq_5 | 408 | 430 | IPR000048 | GO:0005515(InterPro) | |
| Clacu05g0423 | 1111 | SMART | iq_5 | 289 | 311 | IPR000048 | GO:0005515(InterPro) | |
| Clacu05g0423 | 1111 | SMART | iq_5 | 337 | 359 | IPR000048 | GO:0005515(InterPro) | |
| Clacu05g0423 | 1111 | FunFam | unconventional myosin-Va | 340 | 388 | - | - | |
| Clacu05g0423 | 1111 | ProSiteProfiles | IQ motif profile. | 338 | 367 | - | - | |
| Clacu05g0423 | 1111 | ProSiteProfiles | IQ motif profile. | 386 | 415 | - | - | |
| Clacu05g0423 | 1111 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 340 | 438 | IPR027417 | - | |
| Clacu05g0423 | 1111 | FunFam | Class V myosin | 1 | 136 | - | - | |
| Clacu05g0423 | 1111 | ProSiteProfiles | Dilute domain profile. | 701 | 994 | IPR002710 | - | |
| Clacu05g0423 | 1111 | Coils | Coil | 485 | 505 | - | - | |
| Clacu05g0423 | 1111 | Gene3D | - | 222 | 285 | - | - | |
| Clacu05g0423 | 1111 | Coils | Coil | 446 | 466 | - | - | |
| Clacu05g0423 | 1111 | ProSiteProfiles | IQ motif profile. | 313 | 342 | - | - | |
| Clacu05g0423 | 1111 | ProSiteProfiles | IQ motif profile. | 409 | 438 | - | - | |
| Clacu05g0423 | 1111 | Coils | Coil | 569 | 603 | - | - | |
| Clacu05g0423 | 1111 | Gene3D | Kinesin motor domain | 149 | 221 | IPR036961 | - | |
| Clacu05g0423 | 1111 | Gene3D | - | 1 | 147 | - | - | |
| Clacu05g0423 | 1111 | CDD | MyosinXI_CBD | 652 | 1012 | IPR037975 | GO:0007015(InterPro) | |
| Clacu05g0423 | 1111 | ProSiteProfiles | IQ motif profile. | 363 | 390 | - | - | |
| Clacu05g0423 | 1111 | PANTHER | MYOSIN | 1 | 386 | - | GO:0000146(PANTHER)|GO:0005737(PANTHER)|GO:0007015(PANTHER)|GO:0015629(PANTHER)|GO:0030050(PANTHER)|GO:0031982(PANTHER)|GO:0051015(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu05g0423 | Clacu-Chr5:3588151 | Clacu09g0359 | Clacu-Chr9:3107248 | 4.10E-293 | dispersed | |
| Clacu05g0423 | Clacu-Chr5:3588151 | Clacu06g0134 | Clacu-Chr6:1483935 | 0.00E+00 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu05g0423 | K10357 | - | csv:101221506 | 1885.92 |