Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0427 ATGAGGAGAAATGGGAGAACTGATTCGTCTCTTTGCAGTCCTTTCGTCTTCCTCCTTTCTCTGAACTCCAAAAAAATGGATTCAGGGTTCTGCGCCGCCCATCTCTCTCAGCTTCTCGGCCCCAACACAACCAACGCCACCGCCGCTGCTAATTTCATCTGCGATCAGTTCACCACCGTCACCAACAACTTCTCCGACACCAAAAATGCCCTCGACAACACCTACCTACTCTTCTCCGCCTACCTTGTCTTTTCTATGCAACTCGGCTTCGCTATGCTCTGCGCCGGCTCCGTCCGCGCCAAAAACACAATGAACATCATGCTCACCAATGTCCTCGACGCCGCTGCCGGCGGCCTCTTCTATTACCTTTTCGGCTACGCCTTCGCCTTCGGCTCCCCGTCCAATGGCTTCATCGGCCGCCATAACTTCGGTCTCACCTCCTTTCCGACCTCCACTGCCGATTACAGCTTCTTCCTCTACCAATGGGCCTTTGCGATTGCTGCCGCCGGGATTACCAGTGGATCTATCGCCGAGCGGACTCAGTTCGTCGCCTATTTGATTTATTCCTCTGTTTTGACTGGATTCGTTTATCCGGTGGTTTCTCACTGGTTCTGGTCTCCCGATGGTTGGGCTGGGGTTATGAAATCGGATGGCGGACTGTTGTTTGGATCGGGAGTTATCGACTTCGCCGGCTCCGGCGTCGTTCATATGGTTGGAGGAGTTGCTGGTCTATGGGGCGCGTTGATCGAGGGGCCGAGAATCGGTCGATTCGACCACACCGGCCGGTCGGTGGCTCTGCGAGGGCACAGCGCTTCTTTAGTCGTTCTCGGAACTTTCATGCTCTGGTTCGGATGGTACGGTTTCAATCCAGGTTCGTTCGCGAAGATTCTCGTCCCTTACACCACCGGAAACTTCTACGGCCAGTGGAGCGCCGTCGGACGGACGGCGGTCACCACCACGCTCGCCGGATGCACGGCAGCACTCACCACGCTCTTCGGGAAGCGATTCCTCTCAGGGCACTGGAACGTGACGGACGTTTGTAACGGGCTCCTTGGGGGCTTCGCCGCCATCACCGCCGGCTGTTCCGTCGTCGAGCCATGGGCAGCAATCATTTGCGGATTCGTCGCCGCTCTCGTGCTAATAACCTGCAACCGAATCGCAGAGAAAGCAAAATACGACGATCCATTAGAAGCCGCTCAACTCCACGGCGGTTGCGGCGCGTGGGGAGTTATATTCACAGCACTCTTCGCAACGAAGGAGTACGTAACGGAAGTATACGGCGGATCGGGGCGTCCGTACGGACTCCTGATGGGCGGCGGCGGGAGGTTACTGGCAGCGCATTTGGTACAGATTTTGGTGATCGTGGGGTGGGTGAGCGCAACGATGGGGCCATTGTTCTTTGTTCTTCACAAATTGAAGCTTCTGAGAATCTCCTCTGAAGATGAAATGGCGGGAATGGATCTGACCCGCCATGGCGGATTTGCGTACATTTATCATGATGAAGATGAAGCCCAGAAAATGGGGATTCAGTTGAACAGAGTAGAACCTAAATCTGCAACTCCAACCGGAGATTATTGA 1578 55.13 MRRNGRTDSSLCSPFVFLLSLNSKKMDSGFCAAHLSQLLGPNTTNATAAANFICDQFTTVTNNFSDTKNALDNTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGYAFAFGSPSNGFIGRHNFGLTSFPTSTADYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSVLTGFVYPVVSHWFWSPDGWAGVMKSDGGLLFGSGVIDFAGSGVVHMVGGVAGLWGALIEGPRIGRFDHTGRSVALRGHSASLVVLGTFMLWFGWYGFNPGSFAKILVPYTTGNFYGQWSAVGRTAVTTTLAGCTAALTTLFGKRFLSGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIICGFVAALVLITCNRIAEKAKYDDPLEAAQLHGGCGAWGVIFTALFATKEYVTEVYGGSGRPYGLLMGGGGRLLAAHLVQILVIVGWVSATMGPLFFVLHKLKLLRISSEDEMAGMDLTRHGGFAYIYHDEDEAQKMGIQLNRVEPKSATPTGDY 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3632589 3634166 - ClG42_05g0042700.10 Clacu05g0427 248174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0427 525 PANTHER AMMONIUM TRANSPORTER 45 504 - GO:0005887(PANTHER)|GO:0008519(PANTHER)|GO:0072488(PANTHER)|GO:0097272(PANTHER)
Clacu05g0427 525 SUPERFAMILY Ammonium transporter 69 477 - -
Clacu05g0427 525 Gene3D Ammonium transporter AmtB like domains 50 515 IPR029020 -
Clacu05g0427 525 ProSitePatterns Ammonium transporters signature. 228 253 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Clacu05g0427 525 Pfam Ammonium Transporter Family 75 496 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Clacu05g0427 525 FunFam Ammonium transporter 53 511 - -
Clacu05g0427 525 NCBIfam ammonium transporter 72 496 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0427 Clacu-Chr5:3632589 Clacu06g0770 Clacu-Chr6:8972852 3.00E-238 dispersed
Clacu05g0427 Clacu-Chr5:3632589 Clacu07g0139 Clacu-Chr7:1778540 7.30E-200 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0427 K03320 - csv:101208366 912.138