Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu05g0448 | ATGAACTGCTCCATCTCCGGTGAGATTCCGGAAGAGCCAGTTGTCTCCAAGAATTCTGGATTACTCTTCGAGAAGCGCTTAATCGAGAGGCACATTTTGGACTATGGGAAATGCCCTGTTACAGGTGAACCGCTTTCCATTGATGACATTGTTCCAATTAAAACCGGAAAGATAGTCAAGCCCAGGCAAGCTGCTAGCATCCCTGGAATGCTTGGAATGTTCCAGAATGAATGGGATGTTTTGGTGCTGTCCAATTTTGCATTAGAACAACAGCTGCATACAGCTAGACAGGAGCTTAGTCATGCCTTGTATCAGCATGATGCTGCATGTCGTGTGATTGCAAGACTTAAAAAGGAACGGGATGAGGCTAGGTCCTTACTTGCTCAGGCAGAGAGGCAGATGCCTTTGTCGTCAACTTCATTTTCATCCAATGCTGCTGCTGTCAATGTTAATGGGAAAAGAGTTAATGAGGATGAGGAATTGGGTCCTGATGGGAAGAAAATACGTCCAGGAATATCAGCCACTGTTATCTCTGAGCTCACAGATTGTAATGCTGCTCTATCACAACAAAGGAAGAGGCGGCAGATACCTCCTACGTTGGTTCCTGTTGAGGCTCTAGAAAGTTACACCCAGATTTCTAGTCATCCACTTCATAAAACAAGCAAACCAGGCATTATATCTCTTGACATCCATCATGAGAAGGATGTCATTGCGACTGGAGGGCTGGACACAAATGCTGTTCTTTTTGGTCGATCATCTGGGGAGATTTTATCTACACTAAGTGGCCATTCAAAGAAGGTAACAAGTGTCAAATTTGTGGGCCGAGATGATTTATTCTTGACTGGTTCAGCTGACAAGACTGTCCGTGTTTGGCAACAATCTGATGATGGGAACTACAATTGTAGGCACATTTTAAAGGATCATACAGCTGAGATCCAAGCTGTTACCGTCCATGCTACCAATAACTTCTTTGTCACTGCCTCCCTTGATAACACATGGTGTTTTTATGAGCTTGCTTCGGGATTATGCCTGACCCAGGTTGCAGAGGATTCACAAACGGAGGGCTACACATCTGCTGCCTTTCATCCTGATGGTCTCATCCTTGGAACAGGCACGTCAGAGGCTCTTGTTAAAATTTGGGATGTAAAAAGTCAGAAAAATGTGGCCAAATTTGATGGACACGTTGGGGCAGTAACTGCAATATCTTTTTCTGAAAATGGTTATTTCCTTGCGACTGCAGCTCATGATGGAGTAAAGCTGTGGGACCTTCGAAAATTGAAGAACTTCCGTACATTTGCACCTTATGATTCAGAAACTCCAACAAACTCTGTGGACTTTGATCATAGTGGATCTTACCTTGCGATTGCTGGCTCAGACATAAGGGTTTACCAAGTTGCTAGTGTGAAATCTGAATGGAATTGCATCAAAACTATTCCAGATTTGTCTGGCACAGGGAAGGCAACTTGTCTAAAATTTGGACCGGATGCAAAATACTTGGCAGTCGGGTCAATGGATCGAAATCTTCGAATCTTTGGTGTGCCTGGGGAAGATGGTGCGATGGAGGCATGA | 1569 | 44.3 | MNCSISGEIPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLSIDDIVPIKTGKIVKPRQAASIPGMLGMFQNEWDVLVLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQAERQMPLSSTSFSSNAAAVNVNGKRVNEDEELGPDGKKIRPGISATVISELTDCNAALSQQRKRRQIPPTLVPVEALESYTQISSHPLHKTSKPGIISLDIHHEKDVIATGGLDTNAVLFGRSSGEILSTLSGHSKKVTSVKFVGRDDLFLTGSADKTVRVWQQSDDGNYNCRHILKDHTAEIQAVTVHATNNFFVTASLDNTWCFYELASGLCLTQVAEDSQTEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQKNVAKFDGHVGAVTAISFSENGYFLATAAHDGVKLWDLRKLKNFRTFAPYDSETPTNSVDFDHSGSYLAIAGSDIRVYQVASVKSEWNCIKTIPDLSGTGKATCLKFGPDAKYLAVGSMDRNLRIFGVPGEDGAMEA | 522 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 3750770 | 3758934 | - | ClG42_05g0044800.10 | Clacu05g0448 | 248195 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu05g0448 | 522 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 349 | 384 | - | - | |
| Clacu05g0448 | 522 | SMART | WD40_4 | 384 | 422 | IPR001680 | GO:0005515(InterPro) | |
| Clacu05g0448 | 522 | SMART | WD40_4 | 298 | 337 | IPR001680 | GO:0005515(InterPro) | |
| Clacu05g0448 | 522 | SMART | WD40_4 | 253 | 292 | IPR001680 | GO:0005515(InterPro) | |
| Clacu05g0448 | 522 | SMART | WD40_4 | 425 | 464 | IPR001680 | GO:0005515(InterPro) | |
| Clacu05g0448 | 522 | SMART | WD40_4 | 471 | 512 | IPR001680 | GO:0005515(InterPro) | |
| Clacu05g0448 | 522 | SMART | WD40_4 | 340 | 381 | IPR001680 | GO:0005515(InterPro) | |
| Clacu05g0448 | 522 | SMART | WD40_4 | 208 | 250 | IPR001680 | GO:0005515(InterPro) | |
| Clacu05g0448 | 522 | Pfam | Prp19/Pso4-like | 64 | 129 | IPR013915 | - | |
| Clacu05g0448 | 522 | Pfam | WD domain, G-beta repeat | 255 | 291 | IPR001680 | GO:0005515(InterPro) | |
| Clacu05g0448 | 522 | Pfam | WD domain, G-beta repeat | 357 | 381 | IPR001680 | GO:0005515(InterPro) | |
| Clacu05g0448 | 522 | Pfam | WD domain, G-beta repeat | 386 | 422 | IPR001680 | GO:0005515(InterPro) | |
| Clacu05g0448 | 522 | Pfam | WD domain, G-beta repeat | 300 | 336 | IPR001680 | GO:0005515(InterPro) | |
| Clacu05g0448 | 522 | Pfam | WD domain, G-beta repeat | 474 | 511 | IPR001680 | GO:0005515(InterPro) | |
| Clacu05g0448 | 522 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 391 | 424 | - | - | |
| Clacu05g0448 | 522 | ProSiteProfiles | U-box domain profile. | 1 | 70 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
| Clacu05g0448 | 522 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 260 | 292 | - | - | |
| Clacu05g0448 | 522 | SMART | Ubox_2 | 1 | 66 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
| Clacu05g0448 | 522 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 349 | 390 | IPR001680 | GO:0005515(InterPro) | |
| Clacu05g0448 | 522 | Gene3D | - | 200 | 513 | IPR015943 | GO:0005515(InterPro) | |
| Clacu05g0448 | 522 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 60 | IPR013083 | - | |
| Clacu05g0448 | 522 | FunFam | Pre-mRNA-processing factor 19, putative | 1 | 58 | - | - | |
| Clacu05g0448 | 522 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 391 | 431 | IPR001680 | GO:0005515(InterPro) | |
| Clacu05g0448 | 522 | SUPERFAMILY | RING/U-box | 1 | 53 | - | - | |
| Clacu05g0448 | 522 | FunFam | pre-mRNA-processing factor 19 | 197 | 513 | - | - | |
| Clacu05g0448 | 522 | CDD | WD40 | 224 | 511 | - | - | |
| Clacu05g0448 | 522 | Coils | Coil | 113 | 133 | - | - | |
| Clacu05g0448 | 522 | CDD | RING-Ubox_PRP19 | 1 | 54 | - | - | |
| Clacu05g0448 | 522 | SUPERFAMILY | WD40 repeat-like | 221 | 511 | IPR036322 | GO:0005515(InterPro) | |
| Clacu05g0448 | 522 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 260 | 292 | IPR001680 | GO:0005515(InterPro) | |
| Clacu05g0448 | 522 | PANTHER | PRE-MRNA-PROCESSING FACTOR 19 | 1 | 512 | IPR038959 | GO:0000398(PANTHER)|GO:0000398(InterPro)|GO:0000974(PANTHER)|GO:0000974(InterPro)|GO:0004842(PANTHER)|GO:0005737(PANTHER)|GO:0006281(InterPro)|GO:0061630(InterPro)|GO:0071006(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu05g0448 | Clacu-Chr5:3750770 | Clacu10g1525 | Clacu-Chr10:28562059 | 7.40E-11 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu05g0448 | K10599 | - | csv:101204424 | 1022.69 |