Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0460 ATGGCGTTATCCCTTCTTCGAGCTATGGCTTCCGCCTCCACCTCCACCGCCCGCCTCTCTCTTCTTCACAGACGCCTCTTCTCCTCCTCAACTACTCTTACACATCCTCCTTCACCCCCTTCTCTCATTCTCTGCCGTCGATCTCTCCCTCCGCTTTCTCATGCCGTTCGATCCATCCCTTCCGCCTCCAGGTTAACCTCGAGTCGTTGCCACGTCAATCGCTCAGGTAACTCGTCTTACTCTCCCCTTAACTCTAATTCCAACTTCAGTGATCGTCCTCCCACTGAGATGGCGCCTCTTTTCCCTGGATGTGACTATGAGCACTGGCTCATTGTCATGGACAAGCCTGGTGGTGAGGGTGCCACCAAGCAGCAGATGATTGATTGCTACATTCAGACCCTCGCTAAAGTTGTTGGCAGTGAAGAGGAAGCGAAGAAGAGGATTTATAATGTTTCTTGTGAGAGGTATTTTGGGTTTGGGTGTGAGCTTGACGAAGAGACCTCCAACAAGCTCGAAGGCTTGCCAGGTGTTCTGTTTGTTCTTCCTGATTCTTATGTCGACCCTGAGTATAAAGACTATGGGGCTGAGTTGTTGGTGAATGGAGAGATTGTTCAAAGGTCACCAGAGAGACAGAGAAGGGTGGAACCACAGCCTCAGAGAGTTCAGGATAGACCAAAGTATACCGACAGGACCCGCTATGTGAGACGCAGAGAAAACATGAGGCGCTTCCCCAACTTACAACTCTCCTCACTAACAATGGCAGCTTCCGTAGTCTTCGGCTTCACGCCGGCCACTTCTTCCGGTGTAATTGCACCCTCCTCAACCAAACTTCACTTCAGAACTAAAGCGAATTCCGAGCTAGGGTTTCTCACTTCTCAATTGGCTGGCATCAAAATCTCCTCCAATCACTCGCTAATCTCCACCTCTCCCATTTCTACTGCTCCTCTCACACCTGCCCTTCAACCTGTTGCTCGTAGAGTTTGTCCCTTTACTGGAAAGAAAGCAAATAAGAAGAACTTAGTTTCTTTCTCCAACCACAAGACCAAGAAGTTGCAGTTTGTAAATCTTCAATACAAGAAGGTTTGGTGGGAAGCTGGGAAGCGTTTTGTCAAACTACGTTTGTCAACTAAGGCTTTGAAAACCATTGAGAAGAATGGACTTGATGCTGTGGCTAAGAAGGCAGGAATTGATCTTCGTAAGGAGTGA 1206 48.59 MALSLLRAMASASTSTARLSLLHRRLFSSSTTLTHPPSPPSLILCRRSLPPLSHAVRSIPSASRLTSSRCHVNRSGNSSYSPLNSNSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYIQTLAKVVGSEEEAKKRIYNVSCERYFGFGCELDEETSNKLEGLPGVLFVLPDSYVDPEYKDYGAELLVNGEIVQRSPERQRRVEPQPQRVQDRPKYTDRTRYVRRRENMRRFPNLQLSSLTMAASVVFGFTPATSSGVIAPSSTKLHFRTKANSELGFLTSQLAGIKISSNHSLISTSPISTAPLTPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3834404 3839881 + ClG42_05g0046000.10 Clacu05g0460 248207

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0460 401 Hamap Large ribosomal subunit protein bL28 [rpmB]. 323 399 - -
Clacu05g0460 401 FunFam 50S ribosomal L28, chloroplastic 325 401 - -
Clacu05g0460 401 Pfam Multiple organellar RNA editing factor 1, MORF domain 106 196 IPR054059 -
Clacu05g0460 401 MobiDBLite consensus disorder prediction 67 92 - -
Clacu05g0460 401 NCBIfam 50S ribosomal protein L28 326 381 IPR001383 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Clacu05g0460 401 SUPERFAMILY L28p-like 326 398 IPR034704 -
Clacu05g0460 401 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 104 187 IPR037045 -
Clacu05g0460 401 FunFam Multiple organellar RNA editing factor 103 187 - -
Clacu05g0460 401 Pfam Ribosomal L28 family 326 385 IPR026569 GO:0003735(InterPro)
Clacu05g0460 401 Gene3D Ribosomal protein L28/L24 325 401 IPR037147 GO:0003735(InterPro)
Clacu05g0460 401 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 20 240 IPR039206 GO:0005739(PANTHER)|GO:0016554(InterPro)|GO:0080156(PANTHER)
Clacu05g0460 401 MobiDBLite consensus disorder prediction 207 226 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0460 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0460 Clacu-Chr5:3834404 Clacu06g0478 Clacu-Chr6:5571363 7.40E-35 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g749 . . . . . Bpe14g01271 . . . . . Cma14g01829 . Car14g01641 . . Cpe03g01532 Bhi01g00705 . . . . . . . . . . . . . Cone14ag0166 Cone15ag0176 . . . . . Cme06g00470 . . . Bda13g00047 . . Bma02g00759 . . . Cmo14g01870 . . . . . . . . . . . . . Cla05g00426 Cam05g0463 Cec05g0471 Cco05g0472 Clacu05g0460 Cmu05g0439 Cre05g0500 . Csa03g01188 Chy06g00452 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005046 1 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 2 1 1 1 1 1 2 1 2 41