Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0461 ATGAGAGCAAAGACCTGGATTGATGAACAAATTTTTGGGTTCAAGAGTAAATTCAGGAAGATGATAAATTGTATTCGCTCAGGGGATCAGTTAAGAGTAGATGAAATGATTCATTCATCAGATTCTCTGGCGACTCGAGATTATTCAGCTAGTGGTTTTTCATCCCGAACTGGCGAGGTGGAACAAAAGGTGGATAATGGCAACATTGAAGAGGCCGAATCATCTCTTCGTGAGAGTGGCTATTTGAATTACGAGGAAGCACGTGCTTTACTTGGAAGGCTGGAGTATCAAAAGGGTAACATAGAAGCTGCTCTTCATGTATTTGAAGGAATAGATATTGCTGCTGTAATTTCCAGGATAAAAGCTTCCATTTCAACGAGATACGAACAAAATAGGCGCCAATCACAAAGTGATGTTGTGCCTACTATGTCGATGCATGCAATTAGTTTACTTCTTGAAGCTATTTTTCTGAAAGCAAAATCATTACAGGGTTTAGGAAGGTTTGTAGAGGCGGCAAAATCATGCAAACTAATTTTAGACACTGTTGAATCTTCATTCCCAGAAGGCTTACCTGAAAACTTTGCTAATGATTGTAAATTACAAGAGACATTAACGAAGGCTGTTGACTTACTTCCAGAATTGTGGAAATCTGCGGGTTCTCCAGAAGAATCTATCTTGTCATATAGGCGTGCCCTTCTCTACCAATGGAATTTGGGAATGGAAACCAGAGCAAAGATAGAAAAAGAGTTTGCAATATTCCTTCTCTATAGTGGTTGTAATGCAAGTCCTCCAAATCTTCGTTCACAGATGGAAAGCTCATTTGTGCCAAGAAATAATATGGAAGAGGCCATTCTTCTGTTAATGGATCTGATGAGAAAATTTATACTTGGATTGATTGTATGGGACCCGTCAATAATAGAGCATCTCTCGTTTGCACTGTCTATTTCAGGGGAATTTGGAGCTTTAGCTAATGAGGTTGAACAATTGCCTCCTGGAATTATAGCAAGAAAAGAAAAATACTGTATCCTAGCACTTTGTTACTATGGGGAAGGTAAAGGCTTAGTTGCATTGAATCTTTTGAAGAACTTCTTGAATAATATAGAGAACGTTGACTGCTTACTGGAATTGTTGCTGGCTTCAAAGCTCTGTGGAGAAAATTTGGTTTGTCTTGATGAGGGAGTGACATACACATTGAGAGTGCTGTCAGAGCTGCATGGTAAATGCCTCCAGATGGCTTCTGTTGCTAATTGCTTACTTGGTGTGTTATTGTCAGCTATGTCCAAATTTGTTGCTTCAGATTCTCAGAAAACTTTGAAGCAGTCTGAAGCACTCAAGGCGCTACAAACTGCTGAGCAACTGATGAAACAAAGAGATCCATTCATTGTTTACCATCTTTGTCTTGAATATGCTGAACAGAGGAAGCTGGATTTTGCTCTATACTATGCAAAACAGCTAGTGAAACTTGAGGCCGGCTCTAGTATGAAGTCTTACATACTCTTGGCTAGAATATTGTCTGCCCAGAAACGGTTTGTGGATGCAGAGACTGTGCTCAATGCTGCTCTTGAGCAGACAGGGAAGTGGGAACAGGGGGAACTCTTACGAACTAAAGCTAAGCTCCAGATTGCCCAGGGCCAGCTAAAGAACGGTATAGAAACGTACAGTCATCTTCTTGCTATAATTCAAGTTCAGACCAAAAGTAGTGGAAAGATGCTTCCAAAGGATATGAGAAAATCTGACAGAAGTCTGGAAGTAGATACATGGCATGACTTAGCCAATATTTACACAAGCTTGTCTCAATGGCGGGATGCTGAGATCTGTCTGTCAAAATTGGAGGCAATCAATCCGTATTCTGCTTCCAAATGGCATTCCACAGGTTTGCTCTACGAGTCGAAGGGTCATCCACGAGATGCTTTGCAAGCATACAACAAAGCATTGGACATTGATCCTGGCCATGTTCCCAGCTTGATATCAACTGCCTGTCTTCTCCAACAGCTGGGCTGCAGTCAGTCATTTCCTGTGGTGAGAAGCTTGCTAACGGATGCCCTTCGACTAGATCGAGCAAATCCATTGGCATGGTACAGTCTCGGGCTGCTATATAAAGCTGACGCTGGGGCATCGGCACTGGAGGTTGCTGAATGCTTTGAAGCTGCAACTCTGCTTGAAGAGTCAGCACCAGTTGAACCTTTCAGATGA 2193 41.81 MRAKTWIDEQIFGFKSKFRKMINCIRSGDQLRVDEMIHSSDSLATRDYSASGFSSRTGEVEQKVDNGNIEEAESSLRESGYLNYEEARALLGRLEYQKGNIEAALHVFEGIDIAAVISRIKASISTRYEQNRRQSQSDVVPTMSMHAISLLLEAIFLKAKSLQGLGRFVEAAKSCKLILDTVESSFPEGLPENFANDCKLQETLTKAVDLLPELWKSAGSPEESILSYRRALLYQWNLGMETRAKIEKEFAIFLLYSGCNASPPNLRSQMESSFVPRNNMEEAILLLMDLMRKFILGLIVWDPSIIEHLSFALSISGEFGALANEVEQLPPGIIARKEKYCILALCYYGEGKGLVALNLLKNFLNNIENVDCLLELLLASKLCGENLVCLDEGVTYTLRVLSELHGKCLQMASVANCLLGVLLSAMSKFVASDSQKTLKQSEALKALQTAEQLMKQRDPFIVYHLCLEYAEQRKLDFALYYAKQLVKLEAGSSMKSYILLARILSAQKRFVDAETVLNAALEQTGKWEQGELLRTKAKLQIAQGQLKNGIETYSHLLAIIQVQTKSSGKMLPKDMRKSDRSLEVDTWHDLANIYTSLSQWRDAEICLSKLEAINPYSASKWHSTGLLYESKGHPRDALQAYNKALDIDPGHVPSLISTACLLQQLGCSQSFPVVRSLLTDALRLDRANPLAWYSLGLLYKADAGASALEVAECFEAATLLEESAPVEPFR 730
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3841420 3845004 - ClG42_05g0046100.10 Clacu05g0461 248208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0461 730 ProSiteProfiles TPR repeat profile. 618 651 IPR019734 GO:0005515(InterPro)
Clacu05g0461 730 SMART tpr_5 618 651 IPR019734 GO:0005515(InterPro)
Clacu05g0461 730 SMART tpr_5 494 527 IPR019734 GO:0005515(InterPro)
Clacu05g0461 730 SMART tpr_5 530 563 IPR019734 GO:0005515(InterPro)
Clacu05g0461 730 SMART tpr_5 152 185 IPR019734 GO:0005515(InterPro)
Clacu05g0461 730 SMART tpr_5 584 617 IPR019734 GO:0005515(InterPro)
Clacu05g0461 730 Gene3D Tetratricopeptide repeat domain 61 570 IPR011990 GO:0005515(InterPro)
Clacu05g0461 730 Gene3D Tetratricopeptide repeat domain 571 725 IPR011990 GO:0005515(InterPro)
Clacu05g0461 730 SUPERFAMILY TPR-like 531 700 IPR011990 GO:0005515(InterPro)
Clacu05g0461 730 SUPERFAMILY TPR-like 440 558 IPR011990 GO:0005515(InterPro)
Clacu05g0461 730 PANTHER PROTEIN NPG1 14 730 IPR043376 -
Clacu05g0461 730 Pfam Tetratricopeptide repeat 625 650 IPR019734 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0461 Clacu-Chr5:3841420 Clacu11g1847 Clacu-Chr11:29593598 1.10E-158 dispersed
Clacu05g0461 Clacu-Chr5:3841420 Clacu07g0114 Clacu-Chr7:1596540 4.20E-238 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0461 K21843 - csv:101206105 1336.63