Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0474 ATGCAGGCCAGCGATAGATTTAACATCAATTCCCAGCTTGAGCACCTGCAGGCCAAATATGTGGGAACTGGGCATGCCGATTTAAATAGATTCGAATGGACCGTGAACATTCAGCGTGATAGCTATGCATCATATGTTGGACATTACCCCATTCTAGCTTACTTCGCTATAGCAGAAAATGAATCCATTGGAAGGGAACACTACAATTTTATGCAGTTTCCATCTAATCTTCAAGACTCTCTACTGTACCCTATTGTTCTCATCCTTTATTTCAAGAAAAGGCCCATCCCAGTCAGAGTCTGGAGAACGCTTCCATTACCAGATCATTGGTCTGTGACAATTCGATACATCATTAAATCTCCAACTGGTTTCAACGTTTTGTTTGTCCCTTCACCAACGAAAGCTACGGTTCATGTTCTGGAAAATGCAAGCACACATGCTCTCAGTCTGACAAAGATGGTTGAACGGCCGTCAATGAATATCGACATTCACGCTATAGGGAATGTATATTCTGAGCTTTTTATTACGGAAGCTCTTCGTTTCTTCTGCCTGATTTCTGGCTTGAATGGAATTTGCGATCATTGCCATCATCGCCCTGGAAGGTGTGGATCACAGGCAGCATTTCATGATTTGAATCCTTATAGGAATCGACGCCGCACCTGGATTGAGAACGGAATTGTCATGGAGCATATTATAGGTGGGAAGTTTAAGCTTGGAAGGAAGATCGGCAGCGGATCATTTGGAGAACTTTATTTGGGTACAAATGTACAAACTGGAGAGGAAGTGGCTGTGAAGCTGGAATCTGCAAAGACCAAGCACCCTCAGCTTCACTACGAGTCAAAACTATACATGCTTCTTCAAGGAGGAACTGGTATCCCCCATCTCAAATGGTTTGGAGTTGAGGGCGATTACAATGTCATGGTTATTGATCTCCTTGGGCCAAGCCTGGAAGACTTGTTCAACTACTGCAATCGGAAACTGTCCTTGAAGTCGGTTTTGATGCTTGCAGATCAGTTGATAAACAGAGTTGAATATATGCATTCACGGGGTTTCCTTCATCGTGACATAAAGCCAGACAATTTTCTAATGGGCTTGGGTCGAAAGGCTAATCAGGTGTACATCATTGACTATGGTCTTGCGAAGAAGTATAGAGATCTTCAGACACACAAGCATATACCATACAGAGAAAATAAGAATCTTACGGGAACAGCTCGCTATGCAAGTGTCAATACTCATCTTGGAGTTGAGCAAAGCAGAAGGGACGATTTAGAATCACTGGGCTACGTGCTAATGTATTTTCTTAGGGGAAGCCTTCCTTGGCAGGGACTGAAGGCAGGGACTAAAAAGCAAAAATATGATAAGATCAGTGAAAAGAAGATGCTTACTCCAGTAGAGGTCCTCTGCAAGTCATATCCATCAGAATTTACATCCTACTTTCACTATTGTCGGTCGCTGAGGTTTGAAGATAAACCTGACTATTCATATCTGAAGAGATTATTCCGAGACCTTTTCATCCGTGAAGGATATCAATTTGACTATGTATTTGACTGGACTATACTCAAATATCCACAGATTGGCTCCAGTTCAAAACCACGACCCAGTGGAAAACCAGGTCACACCCCAGGGCCATCAGCTGAAAGAGGGGAAAAGCATCCAGTGGGCCAAGATGTCCGAGATAGATTCTCTGGTGGAGCTGAGGCATTCGGAAGAAGGAACGCCAGTGGGCATTTGCATGGTGATCATTCCAGACACAGATCTGATGATGTACCATCTTCCAAGGATGTGAAAGGGGCCGCAGTAGTTACAGGAATGGAAGCATTTCGAAGAGGCCTGTTCTATCGAGCAGTCGACCAAGCTCCTCTGGGGAGCCAAGTGAAATCCGATCAAGTCGCCTGGTGTCAGCAAGTAGTCGTCTATCTGCAGGGCAAAGGGTTCAACCTGGTTTTGAGTCCAAAACGACAACTTTTACCCGTTCTTCAACTACAAAAGGCGGTCGTGATGATACACTCCGGAGCTTTGAGCTGTTGTCTATTGGAACTGGCAAGAGGAAATGAAAAAAGAAACAGATCAATGTGGGTAACTAGTGGCCGTGTGAATGGTCAACATAACACCTATGTATCTTCTGTAAAATGCCCCAGCTCTACGGAAGTTGTTAATACATTTGAGACAGTTGTAATATACCTTCCAGGTTGTATATGCATTAATTATCAAATGTACATTATGCTCAGCTTCATTTCTCACCATCTCCATTCCCATTTCTACCATGGTCCTCCTCCTTCAAGCTCCTCTGTTTGCTCTGTTTTTCCTCACAGCCTTCTCTCCTCTCCGTCTTTCCCAGGGAATTCCTCCTCCTTTGATAAATCTGGCTGGAACCCATCATTTGAGGAGACGTTGTTGACTGCCGGCGAGACTTTCCGCCGACCGTCTCGCCGGAAGAACACAATTTTCGGTGCTCCTTGTGGGCTCTGTGGCCAAGTGATTTTTGGCTCTGAAGGTCTTAATCACCATTGCAATTACCATTTCTTGCAGAATGAGCTTGCTTCTTTTGGAGGCCGCTCGAATCCTTGCTCAGGTAACTCTCAGCGGCCGCCGTTATGGACCAATTATTTCCATGGCCAAGCCTCTGCTTCTCGAGAACCCCAAATGACGCTTAACGATTATTTGACGATACCGCCGTCTTTGAGAAGCTATTCCGGCGCCGGTATTGACATGGGTCACTTGCTTCCGCTTCATCCGTTGTTGGCCCAACCTCCGCCGCCGCCGCGGACTACCACCGCCAACGGTATGAATGTTCAACAGAATCAAGCTGTGGCTCGGCAGAGGAGGCAGGAAAATGAAGTCCGATGGAATAACGGCGGCGGGAGGGCGGTTGGTGGCCGGCCGGCGGCGGAGCAGCAGCCACCTCAAGATGTGATTGATCTGAATTGTGAGGAGAATGATTGTAGCTCTGATGGTTCAGAAGGCTTGGATTTGACATTGAGTCTCTAA 2988 45.85 MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWTVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQFPSNLQDSLLYPIVLILYFKKRPIPVRVWRTLPLPDHWSVTIRYIIKSPTGFNVLFVPSPTKATVHVLENASTHALSLTKMVERPSMNIDIHAIGNVYSELFITEALRFFCLISGLNGICDHCHHRPGRCGSQAAFHDLNPYRNRRRTWIENGIVMEHIIGGKFKLGRKIGSGSFGELYLGTNVQTGEEVAVKLESAKTKHPQLHYESKLYMLLQGGTGIPHLKWFGVEGDYNVMVIDLLGPSLEDLFNYCNRKLSLKSVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKYRDLQTHKHIPYRENKNLTGTARYASVNTHLGVEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKMLTPVEVLCKSYPSEFTSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKYPQIGSSSKPRPSGKPGHTPGPSAERGEKHPVGQDVRDRFSGGAEAFGRRNASGHLHGDHSRHRSDDVPSSKDVKGAAVVTGMEAFRRGLFYRAVDQAPLGSQVKSDQVAWCQQVVVYLQGKGFNLVLSPKRQLLPVLQLQKAVVMIHSGALSCCLLELARGNEKRNRSMWVTSGRVNGQHNTYVSSVKCPSSTEVVNTFETVVIYLPGCICINYQMYIMLSFISHHLHSHFYHGPPPSSSSVCSVFPHSLLSSPSFPGNSSSFDKSGWNPSFEETLLTAGETFRRPSRRKNTIFGAPCGLCGQVIFGSEGLNHHCNYHFLQNELASFGGRSNPCSGNSQRPPLWTNYFHGQASASREPQMTLNDYLTIPPSLRSYSGAGIDMGHLLPLHPLLAQPPPPPRTTTANGMNVQQNQAVARQRRQENEVRWNNGGGRAVGGRPAAEQQPPQDVIDLNCEENDCSSDGSEGLDLTLSL 995
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3938845 3955174 - ClG42_05g0047400.10 Clacu05g0474 248221

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0474 995 SMART serkin_6 236 514 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g0474 995 SUPERFAMILY Protein kinase-like (PK-like) 231 517 IPR011009 -
Clacu05g0474 995 ProSitePatterns Zinc finger C2H2 type domain signature. 820 840 IPR013087 -
Clacu05g0474 995 MobiDBLite consensus disorder prediction 573 592 - -
Clacu05g0474 995 ProSitePatterns Protein kinases ATP-binding region signature. 242 265 IPR017441 GO:0005524(InterPro)
Clacu05g0474 995 MobiDBLite consensus disorder prediction 571 595 - -
Clacu05g0474 995 FunFam Casein kinase 1-like protein 228 556 - -
Clacu05g0474 995 ProSiteProfiles Protein kinase domain profile. 236 505 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g0474 995 Gene3D Transferase(Phosphotransferase) domain 1 204 549 - -
Clacu05g0474 995 FunFam Putative Casein kinase I 228 312 - -
Clacu05g0474 995 ProSitePatterns Serine/Threonine protein kinases active-site signature. 351 363 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu05g0474 995 Pfam Protein kinase domain 237 455 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g0474 995 MobiDBLite consensus disorder prediction 527 556 - -
Clacu05g0474 995 CDD STKc_CK1_delta_epsilon 235 509 - -
Clacu05g0474 995 Pfam Splicing factor 3B subunit 10 (SF3b10) 5 72 IPR009846 -
Clacu05g0474 995 PANTHER CASEIN KINASE-RELATED 235 549 IPR050235 GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0006897(PANTHER)|GO:0007165(PANTHER)|GO:0018105(PANTHER)
Clacu05g0474 995 MobiDBLite consensus disorder prediction 933 967 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0474 K08960 - - csv:101207063 752.666
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0474 Clacu-Chr5:3938845 Clacu07g0108 Clacu-Chr7:1543877 1.10E-183 dispersed
Clacu01g2477 Clacu-Chr1:35212753 Clacu05g0474 Clacu-Chr5:3938845 1.20E-35 transposed
Clacu02g2429 Clacu-Chr2:37262972 Clacu05g0474 Clacu-Chr5:3938845 8.20E-50 transposed
Clacu04g0574 Clacu-Chr4:19038461 Clacu05g0474 Clacu-Chr5:3938845 4.80E-51 transposed
Clacu08g1374 Clacu-Chr8:23764734 Clacu05g0474 Clacu-Chr5:3938845 5.30E-53 transposed
Clacu09g0017 Clacu-Chr9:256822 Clacu05g0474 Clacu-Chr5:3938845 7.00E-52 transposed
Clacu11g0315 Clacu-Chr11:2823581 Clacu05g0474 Clacu-Chr5:3938845 9.60E-154 transposed
Clacu05g0474 Clacu-Chr5:3938845 Clacu06g0712 Clacu-Chr6:8318314 1.30E-197 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g724 . . . . . Bpe14g01261 . . Cmo08g01053 . Cma06g01316 Cma14g01817 Car06g01133 Car14g01629 . Cpe08g00338 Cpe03g01520 Bhi01g00721 . . . . . . Cla06g00672 Cam06g0721 Cec06g0729 Cco06g0737 Clacu06g0712 Cmu06g0698 Cre06g1469 Cone14ag0152 Cone15ag0166 Cone7ag0330 Cone4ag0335 Lsi05g01738 Csa02g01054 Chy05g00315 Cme06g00483 Blo02g00750 Blo07g00269 Bda11g00636 Bda13g00058 . Bpe13g00553 Bma02g00775 Bma06g01604 . Cmo06g01326 Cmo14g01855 Cma08g01078 . Car08g00952 . . Cpe17g00199 Bhi12g01609 Tan06g2404 . . Hepe03g0291 . Lcy13g0383 Cla05g00439 . Cec05g0487 . Clacu05g0474 . . Lsi09g01228 Csa03g01201 Chy06g00465 Cme05g00576
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014381 0 0 0 0 0 1 0 1 1 1 1 1 0 1 1 2 1 0 1 1 1 1 1 1 1 1 1 0 1 0 21
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73541 PF00069 Pkinase 1.30E-25 CL0016 Clacu PK