Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0487 ATGGATTACTCTGGATTCTTCTCCCCGGTTTCCGATTTCTCCTCCGAATCATCGTTCGGTTCACCAGAATCATCCTTCATGAATTTGGACCACAATTTTCTTCCTTTCAATGAGAATGACTCAGAGGAAATGCTTCTGTATGGCCTAATCTCCGAGGGGACACAGGATTCCTCCGACAACAGTATCGGAACCGCGCGAGTGAAGGAAGAGGAAGTCGATTCGATCGGTGAAGAAAGCCCAAAGAAGGAGAGGGCTTACAGGGGAGTTCGTCGCCGGCCATGGGGAAAATTTGCGGCGGAAATTAGAGATTCTACTAGACATGGCATAAGGGTATGGTTAGGAACTTTCGACAGTGCCGAAGCCGCCGCTTTGGCTTACGATCAAGCCGCCTTTTCAATGAGGGGTGCCGCCGCAATTCTCAATTTTCCCGTCGACAGAGTTAGGGAGTCTCTCAAAGAAATGAATTGCAGTGGCGGCGGCAGTGATAGTATAGCTGAAGACGGCGGCTCTCCGGTGGTGGCGTTGAAAAGAAAACACTCGATTAGAAGGAAAGCCATAAGCAAAAAGAGCAAAGAGAGAGATGTGAGGATCCAAAATGTGGTGGTTTTGGAAGATTTAGGAGCAGAGTATTTGGAAGAACTTTTGGGCACTTCTCAAAGTGGTAGCCCTTGTTCTTTCTAA 681 48.02 MDYSGFFSPVSDFSSESSFGSPESSFMNLDHNFLPFNENDSEEMLLYGLISEGTQDSSDNSIGTARVKEEEVDSIGEESPKKERAYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGAAAILNFPVDRVRESLKEMNCSGGGSDSIAEDGGSPVVALKRKHSIRRKAISKKSKERDVRIQNVVVLEDLGAEYLEELLGTSQSGSPCSF 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4045675 4046355 - ClG42_05g0048700.10 Clacu05g0487 248234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0487 226 MobiDBLite consensus disorder prediction 63 84 - -
Clacu05g0487 226 PANTHER DNA-BINDING DOMAIN 56 185 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Clacu05g0487 226 ProSiteProfiles AP2/ERF domain profile. 85 143 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g0487 226 SUPERFAMILY DNA-binding domain 85 144 IPR016177 GO:0003677(InterPro)
Clacu05g0487 226 Gene3D AP2/ERF domain 85 145 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g0487 226 Pfam AP2 domain 86 135 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g0487 226 MobiDBLite consensus disorder prediction 8 23 - -
Clacu05g0487 226 MobiDBLite consensus disorder prediction 53 84 - -
Clacu05g0487 226 FunFam Ethylene-responsive transcription factor 2 84 145 - -
Clacu05g0487 226 CDD AP2 86 145 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g0487 226 PRINTS Ethylene responsive element binding protein signature 109 125 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g0487 226 PRINTS Ethylene responsive element binding protein signature 86 97 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g0487 226 MobiDBLite consensus disorder prediction 1 23 - -
Clacu05g0487 226 SMART rav1_2 85 149 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0487 Clacu-Chr5:4045675 Clacu06g0692 Clacu-Chr6:7996865 3.50E-66 dispersed
Clacu05g0487 Clacu-Chr5:4045675 Clacu05g0488 Clacu-Chr5:4076908 5.70E-16 tandem
Clacu05g0487 Clacu-Chr5:4045675 Clacu06g0166 Clacu-Chr6:1874034 2.20E-15 wgd
Clacu05g0487 Clacu-Chr5:4045675 Clacu06g0689 Clacu-Chr6:7957702 1.90E-19 wgd
Clacu05g0487 Clacu-Chr5:4045675 Clacu07g0091 Clacu-Chr7:1322399 1.20E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47611 PF00847 AP2 2.60E-14 CL0081 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0487 K14516 - csv:101210326 355.14