Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0491 ATGAAGATCATGGTCGCCATTAAGCGAGTCGTCGATTACGCCGTCAAAATCCGTGTTAAACCGGACAGAACGGGCGTTGAGACCCAGAATGTCAAAATGTCGATGAACCCCTTTTGCGAGATTGCAATCGAGGAAGCCCTGCGTATCAAGGAGGCTGGCTTCGCCTCTGAGGTTGTGGCGGTCAGCATGGGTCCGGCTCAGTGCGTCGACACTCTCAGGACGGGCCTAGCGATGGGCGCTGACAGGGGCATTCATGTGGAAGCCACTGCACCCCTTTATCCTCTCTCTGTTGCTAAGCTTTTGAAGGCCCTTGTTGAGGTTGAGAAGCCTGGCCTTCTTTTACTAGGCAAACAGGCTATTGATGATGATTGTAACCAAACCGGGCAGATGATTGCAGGTCTTCTGAACTGGCCTCAAGGGACTTTTGCTTCAAAGGTTGTGATAGACAAGGAGAAGCAGGCAGTGACAGTGGACAGAGAAGTGGATGGTGGTCTTGAGACCCTCTGTTTGGACTTACCAGCCGTAATCACAACTGATTTGAGGCTGAATCAACCGAGGTATGCTACGCTCCCGAACATAATGAAAGCGAAATCAAAACCCATAAAGAAGTTCACTCCACAGGAATTAAATGTGGATGTGAAGCCAGATTTAGAGGTCGTTGAAGTTACGGAACCTCCAAAAAGAAAAGCGGGTATCATATTGTCATCTGTTGATGAACTGATTGACAAACTCAAAAATGAAGCTCATAGGGGTGCGGCGGTGGACGACGCTTTCATTCCAGATCAGATGGATCCCTTAGAGGATTCTAGTTGTTGGGATTTTCTTGATTGCTCCTTCTTCGCCGACGGTGGCAATCTTATTAACACTTCGCTCGATCCTTTGTGGCCGCCTAATGATTCTAGGGATAGTTGTGCGGAGACTGATGTTTCAGCTGGGCGTGTTGAGTCTGAAGAAAACGAGTGTTCGCGGAAGAGGGCACGAGATGGGTCGTGCGCTGGACCAACTTCGAAAGCTTGTCGCGAGAGGTTGCGGAGGGAGAAATTAAATGATAGGTTTCTAGATTTGAGCATTGCTTTAGAACCTAGTAGACCTACCAAAACTAACAAGCCGGCCATACTTGATGATGCCATTAGAGTGTTAAATCAACTTAAGAATGAAGCCGAAGACCTCAAACAAACTAATGAAAAGTTACGAGAAGAAGTGGAGTGTTTAAAGGCAGAGAAGAATGATCTTCGGAAAGAGAAAATCATTCTGAAGGAAGACAAAAAACGAATCGAACAACAGTTGAAATCTGTAGTCGTTCCACCTCCAGGGCTTATCCCTGGTCATCCAGCTGCATATCATGCTGCTCCAGGTAAGATGGCTGTTTTTCCTGGTTATGGTCTGATCCCAATGTGGCAATATCTTCCTCCATCAGTACGAGATACATCTCAAGATCATGAGCTCAGGCCCCCTGCTGCATAG 1464 47.34 MKIMVAIKRVVDYAVKIRVKPDRTGVETQNVKMSMNPFCEIAIEEALRIKEAGFASEVVAVSMGPAQCVDTLRTGLAMGADRGIHVEATAPLYPLSVAKLLKALVEVEKPGLLLLGKQAIDDDCNQTGQMIAGLLNWPQGTFASKVVIDKEKQAVTVDREVDGGLETLCLDLPAVITTDLRLNQPRYATLPNIMKAKSKPIKKFTPQELNVDVKPDLEVVEVTEPPKRKAGIILSSVDELIDKLKNEAHRGAAVDDAFIPDQMDPLEDSSCWDFLDCSFFADGGNLINTSLDPLWPPNDSRDSCAETDVSAGRVESEENECSRKRARDGSCAGPTSKACRERLRREKLNDRFLDLSIALEPSRPTKTNKPAILDDAIRVLNQLKNEAEDLKQTNEKLREEVECLKAEKNDLRKEKIILKEDKKRIEQQLKSVVVPPPGLIPGHPAAYHAAPGKMAVFPGYGLIPMWQYLPPSVRDTSQDHELRPPAA 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4105657 4112970 + ClG42_05g0049100.10 Clacu05g0491 248238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0491 487 Gene3D HUPs 1 249 IPR014729 -
Clacu05g0491 487 Pfam Helix-loop-helix DNA-binding domain 336 384 IPR011598 GO:0046983(InterPro)
Clacu05g0491 487 Pfam Electron transfer flavoprotein domain 26 207 IPR014730 -
Clacu05g0491 487 Coils Coil 373 428 - -
Clacu05g0491 487 PANTHER ELECTRON TRANSFER FLAVOPROTEIN BETA-SUBUNIT 1 249 IPR012255 GO:0005739(PANTHER)|GO:0009055(InterPro)|GO:0009055(PANTHER)|GO:0009063(PANTHER)|GO:0033539(PANTHER)
Clacu05g0491 487 Gene3D - 335 412 IPR036638 GO:0046983(InterPro)
Clacu05g0491 487 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 1 244 - -
Clacu05g0491 487 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 335 403 IPR036638 GO:0046983(InterPro)
Clacu05g0491 487 CDD bHLH_AtILR3_like 337 412 - -
Clacu05g0491 487 SMART finulus 338 389 IPR011598 GO:0046983(InterPro)
Clacu05g0491 487 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 332 383 IPR011598 GO:0046983(InterPro)
Clacu05g0491 487 ProSitePatterns Electron transfer flavoprotein beta-subunit signature. 157 177 IPR000049 GO:0009055(InterPro)
Clacu05g0491 487 SMART ETF_2 23 213 IPR014730 -
Clacu05g0491 487 CDD ETF_beta 2 205 IPR033948 -
Clacu05g0491 487 FunFam Electron transfer flavoprotein subunit beta 1 250 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0491 Clacu-Chr5:4105657 Clacu10g0558 Clacu-Chr10:6745905 1.40E-27 dispersed
Clacu05g0491 Clacu-Chr5:4105657 Clacu05g1640 Clacu-Chr5:24311359 2.50E-29 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47614 PF01012 ETF 1.70E-44 CL0039 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0491 K03521 - csv:101210570 474.937