Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0508 ATGATGGGTTGGGTGGGATTGTCCGGGGTTGATCATCATCACCCTGCTGCGATCAACAACTCTCCCATCTTCAAACAAAGCGATGAAAACAGCGGCGGCAGCAGAGACGACGACGACGACGACGACAACAACCGCGATGAGCCTAAAGAAGGCGCGGTGGAAGCCGGAACACGGAGGCCAAGAGGCCGTCCACCTGGATCTAAAAACAAACCCAAACCCCCAATCTTCGTCACACGTGACAGTCCCAACGCCCTTCGGAGCTACGTCCTAGAGGTAGCTGCCGGATCCGACGTGGCCGATTCCATCGCTCAATTCGCCCGTAAACGCCAGCGTGGCGTCTGCGTCCTCAGTGCAACCGGCTTAGTCGCTAACGTCACCTTACGTCAGCCCGCTGCTCCCGGTTCCGTAATGCCACTCCAAGGAAGGTTTGAGATTCTATCTTTAACCGGCGCTTTTTTACCCGGTCCGGCCCCACCTGGCTCTACTGGCCTCACCGTTTACTTGTCCGGCGGTCAGGGCCAGGTCGTCGGTGGGAGCGTCGTTGGCTCGCTTGTGGCTGCCGGACCCATTATGGTAATTGCAGCCACTTTTGCTAATGCCACTTATGAAAGGTTGCCTCTTGAAGATCCCGACGACCATGAAGTTGGAAGTGGCTCCGCCTCACACGGCGGTCCTAGAAGTCCACCGCCCGAAATTAGAGCCACTGGAGGAGCGCAGATGCCGCCTGGGATGCCGGAACCCACTTTGCCGTTGTATAATTTACTGCCGGATATGATTCCCAACGGTGTTCAGCTTGGTCACGACGGGTATGCTTATGTCCGGCCGCCGTATTGA 834 57.07 MMGWVGLSGVDHHHPAAINNSPIFKQSDENSGGSRDDDDDDDNNRDEPKEGAVEAGTRRPRGRPPGSKNKPKPPIFVTRDSPNALRSYVLEVAAGSDVADSIAQFARKRQRGVCVLSATGLVANVTLRQPAAPGSVMPLQGRFEILSLTGAFLPGPAPPGSTGLTVYLSGGQGQVVGGSVVGSLVAAGPIMVIAATFANATYERLPLEDPDDHEVGSGSASHGGPRSPPPEIRATGGAQMPPGMPEPTLPLYNLLPDMIPNGVQLGHDGYAYVRPPY 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4214245 4215821 + ClG42_05g0050800.10 Clacu05g0508 248255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0508 277 CDD DUF296 86 168 IPR005175 -
Clacu05g0508 277 MobiDBLite consensus disorder prediction 208 249 - -
Clacu05g0508 277 Pfam Plants and Prokaryotes Conserved (PCC) domain 86 198 IPR005175 -
Clacu05g0508 277 ProSiteProfiles PPC domain profile profile. 82 223 IPR005175 -
Clacu05g0508 277 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 31 270 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Clacu05g0508 277 PIRSF ESCAROLA 6 275 IPR014476 GO:0003680(InterPro)
Clacu05g0508 277 FunFam AT-hook motif nuclear-localized protein 85 213 - -
Clacu05g0508 277 Gene3D - 85 214 - -
Clacu05g0508 277 SUPERFAMILY AF0104/ALDC/Ptd012-like 83 210 - -
Clacu05g0508 277 MobiDBLite consensus disorder prediction 15 80 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g2236 Clacu-Chr2:35458015 Clacu05g0508 Clacu-Chr5:4214245 7.70E-10 dispersed
Clacu05g0508 Clacu-Chr5:4214245 Clacu07g0338 Clacu-Chr7:3843198 3.30E-66 dispersed
Clacu02g1735 Clacu-Chr2:30844980 Clacu05g0508 Clacu-Chr5:4214245 1.50E-77 wgd
Clacu05g0508 Clacu-Chr5:4214245 Clacu06g0677 Clacu-Chr6:7814494 8.10E-57 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0508 - - - 0.0