Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0512 ATGAAACTTTCTCGTCTAAATTCCCTCCGGCGAGTTCAGTCCGGCGACCTTATCATGAAGCTCCCCGACGACCACGACGATTCCAAAAGACCCCAATTCCCTCTCGATTCCACCTCTTACAAAATCATCGACGAAATTGGGATCGGCGTCAGCGCCGTCGTGTACAAAGCTATCTGCATTCCGATGAATTCTGCAGTTGTGGCCATCAAAGCCATCGATCTCGATCGATCACGAGCCGATTTCGATGACATTCGAAGAGAAGCCAAAATTCTCTCACTTCTCTCTCACCCCAATATTCTAAATGCTCACTGTTCTTTCACCGTCGATCGTCGTCTTTGGGTCGTAATGCCGTTCATGTCAGCTGGATCTTTACAGTCCATTATTACGTCATCGTTTCCCGATGGCTTGCCGGAACCCTGTATCGCCGTTGTTCTTCGGGAAATTCTACACGCTCTGTCTTACCTCCACGACCAAGGCCATCTCCACCGTGATATTAAAGCCGGCAACATTCTGATGGACTCAAATGGGTCTGTCAAGCTGGCTGATTTTGGAGTTTCGGCGTCGATTTTTGAGGCGAATTCAAAACAGGGGGTGTCAATTTCTCCACTATCGACATCGATGATGCTGAAGGAAGTCGCCGGAACGCCGTACTGGATGGCGCCGGAGGTGATTCACTCCCACAATGGGTATAGTTTGAAAGCGGATATATGGTCATTTGGAATCACGGCGTTGGAATTAGCCCATGGACGACCTCCTCTGTCTCATCTCCCTCCTTCCAAATCCCTGCTTCTGAAAATCACGCGGAGGTTTCGATTCTCCGATTACGAGAACCACCGCAACTGCAAGAACAAGAACAAATTCTCAAAAGGGTTTAAGGAATTGGTAGCCTCTTGCCTCGATCAAGAGCCATCGAGAAGACCCTGCGCGGAGAAATTGCTCAAACATCCGTTCTTCAAAAACTGCAAGGGACCTGATCTTCTCGTAAAGACAATATTACAAGGTCTACCCAGCGTTGAGGAGCGATTCAAATTGGGGAAATTACAGCGATTGCCGTCGATGAAAACTGAGGAAGAGGAGGAGGAAGAAGAATTAGAGAAGGAGATTATAAAACAGAGGAGGATAAGTGGGTGGAATTTCAATGAGGATGGACTAGAGCTGGACCCTGTTTTTCCAGGGGAAAACTGCGAGGAAGAATGCTCGATCATAGAGGAGAAGGGTTCGGGGGATTTGAGCGAGTGGTGTTCTGGGTTGTCGGATCTAAGTTCGCCGGTGGGGAACGAGAGGGGCGGCGGCGGTGGCGGAGGGGAGGAGGAGGTTGTTGACAGGGAATCGATAGTGGGGGGATTGGTGGCGCTGAAAAGGAGCTTAGACGAGCAGAGGAGGGCGGTGGGGAGTTTGATAGAGCTGATAGAAGGGGAGAAAGGGGGAGAGATGAGCAGAGAGGAACAGATGGGGAGATTGATGGAGAAGATGACGAAGGAGTTGGAGAATGAGAGGAAGAGGAACTTTGAATTGGAAATGGAGTTGGAATTTCTTAGGCTTCAGATTTCTGCTGCTTATAATAATAATAATAATAATAATAATAATAATAATAATAATCATAATGGTGGTGGTGGTGCTTCAACCGCCATTTATAACTGA 1641 48.08 MKLSRLNSLRRVQSGDLIMKLPDDHDDSKRPQFPLDSTSYKIIDEIGIGVSAVVYKAICIPMNSAVVAIKAIDLDRSRADFDDIRREAKILSLLSHPNILNAHCSFTVDRRLWVVMPFMSAGSLQSIITSSFPDGLPEPCIAVVLREILHALSYLHDQGHLHRDIKAGNILMDSNGSVKLADFGVSASIFEANSKQGVSISPLSTSMMLKEVAGTPYWMAPEVIHSHNGYSLKADIWSFGITALELAHGRPPLSHLPPSKSLLLKITRRFRFSDYENHRNCKNKNKFSKGFKELVASCLDQEPSRRPCAEKLLKHPFFKNCKGPDLLVKTILQGLPSVEERFKLGKLQRLPSMKTEEEEEEEELEKEIIKQRRISGWNFNEDGLELDPVFPGENCEEECSIIEEKGSGDLSEWCSGLSDLSSPVGNERGGGGGGGEEEVVDRESIVGGLVALKRSLDEQRRAVGSLIELIEGEKGGEMSREEQMGRLMEKMTKELENERKRNFELEMELEFLRLQISAAYNNNNNNNNNNNNNHNGGGGASTAIYN 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4272361 4274001 - ClG42_05g0051200.10 Clacu05g0512 248259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0512 546 SMART serkin_6 40 318 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g0512 546 SUPERFAMILY Protein kinase-like (PK-like) 39 335 IPR011009 -
Clacu05g0512 546 Pfam Protein kinase domain 40 318 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g0512 546 MobiDBLite consensus disorder prediction 523 546 - -
Clacu05g0512 546 Gene3D Phosphorylase Kinase; domain 1 29 118 - -
Clacu05g0512 546 Coils Coil 481 515 - -
Clacu05g0512 546 Coils Coil 347 374 - -
Clacu05g0512 546 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 32 517 IPR047173 GO:0043539(InterPro)|GO:1902456(PANTHER)
Clacu05g0512 546 Gene3D Transferase(Phosphotransferase) domain 1 122 372 - -
Clacu05g0512 546 FunFam Serine/threonine-protein kinase BLUS1 29 118 - -
Clacu05g0512 546 ProSitePatterns Protein kinases ATP-binding region signature. 46 70 IPR017441 GO:0005524(InterPro)
Clacu05g0512 546 ProSiteProfiles Protein kinase domain profile. 40 318 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0512 Clacu-Chr5:4272361 Clacu11g1974 Clacu-Chr11:30675950 2.50E-54 dispersed
Clacu09g1946 Clacu-Chr9:34349714 Clacu05g0512 Clacu-Chr5:4272361 3.40E-93 transposed
Clacu10g0086 Clacu-Chr10:1161444 Clacu05g0512 Clacu-Chr5:4272361 8.90E-87 transposed
Clacu05g0512 Clacu-Chr5:4272361 Clacu06g0674 Clacu-Chr6:7766196 2.20E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73543 PF00069 Pkinase 3.60E-59 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0512 K08835 - csv:101215648 906.36