Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu05g0512 | ATGAAACTTTCTCGTCTAAATTCCCTCCGGCGAGTTCAGTCCGGCGACCTTATCATGAAGCTCCCCGACGACCACGACGATTCCAAAAGACCCCAATTCCCTCTCGATTCCACCTCTTACAAAATCATCGACGAAATTGGGATCGGCGTCAGCGCCGTCGTGTACAAAGCTATCTGCATTCCGATGAATTCTGCAGTTGTGGCCATCAAAGCCATCGATCTCGATCGATCACGAGCCGATTTCGATGACATTCGAAGAGAAGCCAAAATTCTCTCACTTCTCTCTCACCCCAATATTCTAAATGCTCACTGTTCTTTCACCGTCGATCGTCGTCTTTGGGTCGTAATGCCGTTCATGTCAGCTGGATCTTTACAGTCCATTATTACGTCATCGTTTCCCGATGGCTTGCCGGAACCCTGTATCGCCGTTGTTCTTCGGGAAATTCTACACGCTCTGTCTTACCTCCACGACCAAGGCCATCTCCACCGTGATATTAAAGCCGGCAACATTCTGATGGACTCAAATGGGTCTGTCAAGCTGGCTGATTTTGGAGTTTCGGCGTCGATTTTTGAGGCGAATTCAAAACAGGGGGTGTCAATTTCTCCACTATCGACATCGATGATGCTGAAGGAAGTCGCCGGAACGCCGTACTGGATGGCGCCGGAGGTGATTCACTCCCACAATGGGTATAGTTTGAAAGCGGATATATGGTCATTTGGAATCACGGCGTTGGAATTAGCCCATGGACGACCTCCTCTGTCTCATCTCCCTCCTTCCAAATCCCTGCTTCTGAAAATCACGCGGAGGTTTCGATTCTCCGATTACGAGAACCACCGCAACTGCAAGAACAAGAACAAATTCTCAAAAGGGTTTAAGGAATTGGTAGCCTCTTGCCTCGATCAAGAGCCATCGAGAAGACCCTGCGCGGAGAAATTGCTCAAACATCCGTTCTTCAAAAACTGCAAGGGACCTGATCTTCTCGTAAAGACAATATTACAAGGTCTACCCAGCGTTGAGGAGCGATTCAAATTGGGGAAATTACAGCGATTGCCGTCGATGAAAACTGAGGAAGAGGAGGAGGAAGAAGAATTAGAGAAGGAGATTATAAAACAGAGGAGGATAAGTGGGTGGAATTTCAATGAGGATGGACTAGAGCTGGACCCTGTTTTTCCAGGGGAAAACTGCGAGGAAGAATGCTCGATCATAGAGGAGAAGGGTTCGGGGGATTTGAGCGAGTGGTGTTCTGGGTTGTCGGATCTAAGTTCGCCGGTGGGGAACGAGAGGGGCGGCGGCGGTGGCGGAGGGGAGGAGGAGGTTGTTGACAGGGAATCGATAGTGGGGGGATTGGTGGCGCTGAAAAGGAGCTTAGACGAGCAGAGGAGGGCGGTGGGGAGTTTGATAGAGCTGATAGAAGGGGAGAAAGGGGGAGAGATGAGCAGAGAGGAACAGATGGGGAGATTGATGGAGAAGATGACGAAGGAGTTGGAGAATGAGAGGAAGAGGAACTTTGAATTGGAAATGGAGTTGGAATTTCTTAGGCTTCAGATTTCTGCTGCTTATAATAATAATAATAATAATAATAATAATAATAATAATAATCATAATGGTGGTGGTGGTGCTTCAACCGCCATTTATAACTGA | 1641 | 48.08 | MKLSRLNSLRRVQSGDLIMKLPDDHDDSKRPQFPLDSTSYKIIDEIGIGVSAVVYKAICIPMNSAVVAIKAIDLDRSRADFDDIRREAKILSLLSHPNILNAHCSFTVDRRLWVVMPFMSAGSLQSIITSSFPDGLPEPCIAVVLREILHALSYLHDQGHLHRDIKAGNILMDSNGSVKLADFGVSASIFEANSKQGVSISPLSTSMMLKEVAGTPYWMAPEVIHSHNGYSLKADIWSFGITALELAHGRPPLSHLPPSKSLLLKITRRFRFSDYENHRNCKNKNKFSKGFKELVASCLDQEPSRRPCAEKLLKHPFFKNCKGPDLLVKTILQGLPSVEERFKLGKLQRLPSMKTEEEEEEEELEKEIIKQRRISGWNFNEDGLELDPVFPGENCEEECSIIEEKGSGDLSEWCSGLSDLSSPVGNERGGGGGGGEEEVVDRESIVGGLVALKRSLDEQRRAVGSLIELIEGEKGGEMSREEQMGRLMEKMTKELENERKRNFELEMELEFLRLQISAAYNNNNNNNNNNNNNHNGGGGASTAIYN | 546 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 4272361 | 4274001 | - | ClG42_05g0051200.10 | Clacu05g0512 | 248259 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu05g0512 | 546 | SMART | serkin_6 | 40 | 318 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu05g0512 | 546 | SUPERFAMILY | Protein kinase-like (PK-like) | 39 | 335 | IPR011009 | - | |
Clacu05g0512 | 546 | Pfam | Protein kinase domain | 40 | 318 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu05g0512 | 546 | MobiDBLite | consensus disorder prediction | 523 | 546 | - | - | |
Clacu05g0512 | 546 | Gene3D | Phosphorylase Kinase; domain 1 | 29 | 118 | - | - | |
Clacu05g0512 | 546 | Coils | Coil | 481 | 515 | - | - | |
Clacu05g0512 | 546 | Coils | Coil | 347 | 374 | - | - | |
Clacu05g0512 | 546 | PANTHER | SERINE/THREONINE-PROTEIN KINASE FRAY2 | 32 | 517 | IPR047173 | GO:0043539(InterPro)|GO:1902456(PANTHER) | |
Clacu05g0512 | 546 | Gene3D | Transferase(Phosphotransferase) domain 1 | 122 | 372 | - | - | |
Clacu05g0512 | 546 | FunFam | Serine/threonine-protein kinase BLUS1 | 29 | 118 | - | - | |
Clacu05g0512 | 546 | ProSitePatterns | Protein kinases ATP-binding region signature. | 46 | 70 | IPR017441 | GO:0005524(InterPro) | |
Clacu05g0512 | 546 | ProSiteProfiles | Protein kinase domain profile. | 40 | 318 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu05g0512 | Clacu-Chr5:4272361 | Clacu11g1974 | Clacu-Chr11:30675950 | 2.50E-54 | dispersed | |
Clacu09g1946 | Clacu-Chr9:34349714 | Clacu05g0512 | Clacu-Chr5:4272361 | 3.40E-93 | transposed | |
Clacu10g0086 | Clacu-Chr10:1161444 | Clacu05g0512 | Clacu-Chr5:4272361 | 8.90E-87 | transposed | |
Clacu05g0512 | Clacu-Chr5:4272361 | Clacu06g0674 | Clacu-Chr6:7766196 | 2.20E-53 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
73543 | PF00069 | Pkinase | 3.60E-59 | CL0016 | Clacu | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu05g0512 | K08835 | - | csv:101215648 | 906.36 |