Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0531 ATGGCCACCGTGAAATTACCCACTGACAAGCTCATGGTTTGTTTGACTTGCCCTCTTTGCAATAACTTGTTCACTCATGCTACCACCATATCTGAATGCCTCCACACGTTTTGCAGGGTTTGTATCTATGAGAAGATAACTGAGGAGGAATTAGAGGGTTGTCCTGTCTGTAACACAAATTTAGGGGGTGTTCCTTTGGAGAAACTCAGGGCAGACCACACAATGGATGATTTGAGGGAGAAGATATTCCCTTGTAAAGGGAGGAAGGAGAAGGAACCTGAAACAACACACTCGGCCTCAGTTTCATCGCCTACAAAACGAAAAGAGAGATCACTCTCTTCTTTAGAGATAGATAATACATATACAACTTCTGACTCTGCAACAATGAAAATGCTGTCGAAATCTACAGCACAAGAGAACCTCGCTGAGCAACAATGCGTTTCCACCACGATTGTGCACAGTAAACCCATCTTTGATCAAAATAAGCAGAACAATACCCAAGTAATGGAAAGGAAAACTGTTGATTTGAATAAAAAAGAAGAAGCAACTGTAACGTCTTCAAATGATTGTAATATACAATATAATACTATTGCCAAGGCAGAGACAATTCAGATTGATGATAACTATTGTAATGTTCAAGGACATGGTCACAAGCCAATAATGGAAAGAGTTGAAAGTGGATCTTATGGAACTTCACCTTCTATTGAACATGGAATATTGCAGGATGTTTCAAGGGAAAGAAGATTAGCTAGCAGCAATGGATCTTCTGGTAAATTGCAGGATCCTATAGGTGATATTGATGCAGATGGACGATGCAATATGTTATCAAATCCTATATGGTTTGCACTAGTTGCTTCCAATCACCAGGAAGGAAATGAGCCTTTGCCTCAGATCTCCTCAAACTACTTGAGGGTCAGCGATGGCAGTATACCTGTGTTATTTATCCAGAAATATCTTGCGAAGAAACTGGGCCTTGCTAGTGAGATTGAGGTGGAAATCTCATTCAAGGGTCAGCCAGTGAGCTCCACATTGCATCTACATGATATCGTAGAATTGTGGCGACAGACAACCACCAAAGTAGAACTAATACAGATATCTGTGGGCAGCTCGGCCAAGGATTTTGTGATGGTTCTATCTTATGGTCGGAAGTGTTGTCACCCTGGAAAATTTCCGGATATTTGTCCCAACTTAAAGAACGATGTTCAATAA 1209 40.86 MATVKLPTDKLMVCLTCPLCNNLFTHATTISECLHTFCRVCIYEKITEEELEGCPVCNTNLGGVPLEKLRADHTMDDLREKIFPCKGRKEKEPETTHSASVSSPTKRKERSLSSLEIDNTYTTSDSATMKMLSKSTAQENLAEQQCVSTTIVHSKPIFDQNKQNNTQVMERKTVDLNKKEEATVTSSNDCNIQYNTIAKAETIQIDDNYCNVQGHGHKPIMERVESGSYGTSPSIEHGILQDVSRERRLASSNGSSGKLQDPIGDIDADGRCNMLSNPIWFALVASNHQEGNEPLPQISSNYLRVSDGSIPVLFIQKYLAKKLGLASEIEVEISFKGQPVSSTLHLHDIVELWRQTTTKVELIQISVGSSAKDFVMVLSYGRKCCHPGKFPDICPNLKNDVQ 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4394183 4396049 - ClG42_05g0053100.10 Clacu05g0531 248278

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0531 402 SMART ring_2 17 57 IPR001841 -
Clacu05g0531 402 Pfam Zinc finger, C3HC4 type (RING finger) 17 57 - -
Clacu05g0531 402 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 1 383 IPR044807 GO:0004842(InterPro)
Clacu05g0531 402 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 110 IPR013083 -
Clacu05g0531 402 SUPERFAMILY RING/U-box 14 81 - -
Clacu05g0531 402 ProSitePatterns Zinc finger RING-type signature. 33 42 IPR017907 -
Clacu05g0531 402 MobiDBLite consensus disorder prediction 84 120 - -
Clacu05g0531 402 Gene3D - 267 364 - -
Clacu05g0531 402 ProSiteProfiles Zinc finger RING-type profile. 17 58 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0531 K16277 - - csv:101216620 599.742
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1715 Clacu-Chr2:30624513 Clacu05g0531 Clacu-Chr5:4394183 1.90E-63 wgd
Clacu05g0531 Clacu-Chr5:4394183 Clacu07g0057 Clacu-Chr7:940931 1.00E-60 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g608 . . . . . . . . . . . Cma14g01775 . Car14g01597 . . Cpe03g01486 . . . . . . . . . . . . . . . . . . Lsi05g01665 . . Cme06g00546 . . . . . . . . . . Cmo14g01812 . . . . . . . . . . . . . Cla05g00488 Cam05g0533 Cec05g0545 Cco05g0545 Clacu05g0531 Cmu05g0503 Cre05g0571 . Csa03g01264 Chy06g00518 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014069 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 23