Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0539 ATGCATCCATTGGGAACACATTATAAAAACCTAATTTTCCAATGCCTCCATTGCAACTATAGTACGCTTCACTTCCAAGGCACTTTCAGCGCCGCCACCGTCGCCGCTATGGAGACGGGGCTCCGGCCAACGCTCGCCGCAGCTCCACCTTCCACCGGCGCCACCCTTCTCGGAAAGTACCAATTAGGCCGCCTTCTCGGTCGCGGAAGCTTCGCCAAAGTCTACCAAGCAGTTTCCTTAGCCGATAACTCCACCGTTGCCATCAAAATCATCGACAAATCCAAAACGGTCGGCGCCGCTCTTGAACATTGCATAGTCCGAGAGGTCGCCGCCATGCGCCGCCTCGATCACCACCCAAACATCCTCAAAATCCACGAAGTCATGGCGACCAAGTCCAAAATCTACCTGGTGGTCGAATTCGCCGCCGGAGGCGAACTCTTCGCCAAAATCTCCCGCCGCGGGCGATTCACCGAACCCGTCGCCCGCCGGTACTTCCAACAACTCGTCTCAGCCCTCAAGTTCTGCCACGAAAACGGCGTCGTTCACCGCGATGTGAAGCCGCAGAATCTTTTGCTGGACGAACAGGGCAATCTGAAAATCTCCGATTTCGGCCTCTCTGCTTTACCCGAACAGCTCAGAGACGGGTTGCTCCACACGGCTTGTGGAACTCCAGCGTACTCAGCGCCGGAGGTCATGATCCGGCGCGGTGGCGGCGGATACGACGGTGGAAAGGCCGACGCCTGGTCTTGTGGAGTGATTTTATTCGTATTGCTCTCTGGGTATCTCCCTTTCGACGACAGCAACCTAGCGGGGATGTACAAGAACATCCACCGGCGAGAATTTCAAATCCCTAATTGGATATCGAAACCGGTCCGATTCCTAATATATCATCTCCTCGATCCGAATCCCAAAACGAGAATGAGCATTGAGACGTTAATGCAAAACCCCTGGTTCAAGAAATCGCTGCAATTGAAACAGAGTAATGAAAGTTTATTGCAACCGATGAGGGATTATCGATCGGGGACAGAGAGGGGAATTAGGGAAATGAATGCGTTCGATATAATTTCGATGTCGTCGGGGTTGGATTTATCGGGGCTGTTTGAAACGGCGGAGAAAAGGGCGGAGAGGAGGTTTACGTCGAGGGCGACGGTGATGGAGGTGGAGGAGAGGGTGAAGGAGATGGGCGGAGAGTTGGGGTACAAGGTGGAGGCGGGGGCGAAGGGAGGGGCGATCGGAATGGGGAAGGGGAGGGTGGTGGTGGTGGTGGAAGTGGTGAAGGTGGCGGTGGCTCCGGTGACGTTGACGATGGTGGAGGTGAGGGTGGTGAAAGGAGGGGAGGAGTTTGAAGAACTCCATTGGAGGTGTTTTGAAGGTAAACTTGAAGGATTTGCAGTTCCATGGCAGAGGAAATGTAATATGTGA 1422 54.15 MHPLGTHYKNLIFQCLHCNYSTLHFQGTFSAATVAAMETGLRPTLAAAPPSTGATLLGKYQLGRLLGRGSFAKVYQAVSLADNSTVAIKIIDKSKTVGAALEHCIVREVAAMRRLDHHPNILKIHEVMATKSKIYLVVEFAAGGELFAKISRRGRFTEPVARRYFQQLVSALKFCHENGVVHRDVKPQNLLLDEQGNLKISDFGLSALPEQLRDGLLHTACGTPAYSAPEVMIRRGGGGYDGGKADAWSCGVILFVLLSGYLPFDDSNLAGMYKNIHRREFQIPNWISKPVRFLIYHLLDPNPKTRMSIETLMQNPWFKKSLQLKQSNESLLQPMRDYRSGTERGIREMNAFDIISMSSGLDLSGLFETAEKRAERRFTSRATVMEVEERVKEMGGELGYKVEAGAKGGAIGMGKGRVVVVVEVVKVAVAPVTLTMVEVRVVKGGEEFEELHWRCFEGKLEGFAVPWQRKCNM 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4478495 4479916 - ClG42_05g0053900.10 Clacu05g0539 248286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0539 473 ProSitePatterns Protein kinases ATP-binding region signature. 66 89 IPR017441 GO:0005524(InterPro)
Clacu05g0539 473 ProSitePatterns Serine/Threonine protein kinases active-site signature. 180 192 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu05g0539 473 CDD CIPK_C 350 454 - -
Clacu05g0539 473 SUPERFAMILY Protein kinase-like (PK-like) 57 342 IPR011009 -
Clacu05g0539 473 Pfam Protein kinase domain 60 318 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g0539 473 FunFam Non-specific serine/threonine protein kinase 51 341 - -
Clacu05g0539 473 Pfam NAF domain 348 403 IPR004041 GO:0007165(InterPro)
Clacu05g0539 473 Gene3D Transferase(Phosphotransferase) domain 1 146 339 - -
Clacu05g0539 473 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 55 402 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Clacu05g0539 473 SMART serkin_6 60 318 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g0539 473 FunFam Non-specific serine/threonine protein kinase 53 145 - -
Clacu05g0539 473 Gene3D Phosphorylase Kinase; domain 1 62 145 - -
Clacu05g0539 473 ProSiteProfiles NAF domain profile. 344 368 IPR018451 GO:0007165(InterPro)
Clacu05g0539 473 Gene3D Kinase associated domain 1, KA1 344 464 - -
Clacu05g0539 473 ProSiteProfiles Protein kinase domain profile. 60 318 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0539 Clacu-Chr5:4478495 Clacu06g1315 Clacu-Chr6:24121893 4.60E-92 dispersed
Clacu04g0685 Clacu-Chr4:20798243 Clacu05g0539 Clacu-Chr5:4478495 4.80E-07 transposed
Clacu05g0539 Clacu-Chr5:4478495 Clacu06g0648 Clacu-Chr6:7457518 9.00E-157 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73545 PF00069 Pkinase 5.60E-69 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0539 K12761 - csv:101217555 728.013