Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0562 ATGGGTAATGCTGATTTTGAATGCCCTCACAGAGTAGCCATTCCTCCAAAAAAGCCCTTCTTCCACTCCTTATCTTCCAATCTCAAAGAAACCTTCTTCCCCGATGACCCTTTCAAACAATTCAAAAACCAACCTTTGCCCACCCAAATCCTTCTCTGGCTTAAATACTTCATCCCCTTTCTTGATTGGGCTCCTCGTTACACTTTCGACTTCTTCAAAGCCGACCTCGTCGCTGGTATCACCATCGCCAGTTTGGCCGTCCCTCAGGGTATCAGCTATGCCAATCTCGCCAGTATCCCTCCCATCATCGGACTTTATTCCAGCTTCATCCCACCCTTGGTATACGCCATGTTCGGAAGCTCCAAAGATATAGCAGTGGGGACGGTGGCAGTAGCTTCCTTGCTTATGTCTGCCATGTTGGGGAAGGAAGTCAACCCGGTAGAGCATCCAAAGCAATACGTTCAATTGGTTTTCACTGCCACCTTCTTTGCAGGGGTTTTTCAGGCTTCTCTCGGGTTTCTCAGATTAGGGCTGATTGTGGACTTTTTGTCGCATGCAACAATAGTGGGCTTCATGGGTGGTGCAGCAACCGTGGTTTGTCTTCAGCAATTGAAAGGCATAACGGGATTGCTTCATTTTACGCATGAGACTGATATTGTATCCGTTATGCGCTCTCTTTTCTCTCAAATTCACAAGTGGAGATGGGAAAGTATTGTGTTGGGTTGCTGTTTTCTCTTCTTTCTCCTCCTCACTAGATACTTGAGCAAGAAGAAAGCAATCTTCTTTTGGATAAATGCATTGGCGCCTTTGACTTCGGTCATCTTGGGAAGTCTTCTCGTTTACTTAACCCATGCTGAAAAGCATGGAGTTCAAGTGATTGGGAATTTGAAGAAAGGGTTGAATCCCCCTTCTGTATCTGATTTAGTATTTGGATCCCCTCATCTCGCCGTTGCCATCAAAACAGGGATCATCATCGGAATCATTGGCCTCGCTGAAGGAGTTGCAGTGGGAAGAAGTTTTGCTGCTTTTAAGAACTACCACATTGATGGAAACAAGGAGATGATAGCATTTGGGATGATGAACATTGTTGGTTCTTGCACTTCTTGCTACCTTACTGCAGGACCATTTTCGAGGACTGCGGTGAATTTCAATGCAGGATGTAAAACTGCGGTCTCAAATATTGTCATGGCAATTGCTCTGATGATCACTCTGTTGTTTTTGACGCCATTTTTTCATTACACACCCCTGGTGGTGCTTTCCTCCATAATCATCACTGCTATGCTCGGCCTAATCAACTATGAAGAAGTCATCCACCTTTGGAAAATTGACAAATTTGACTTTGTCGTCTGCCTCGGTGCATATATCGGTGTCGTCTTTGGCAGCGTTGAAACTGGCTTGATTGTTGCGATTACACTCTCTTTGTTAAGGGTGCTTCTAATCATCGCGAGGCCAAGAACTTTAGTATTAGGCAACATTCCCAACTCGACAATTTACAGAAGCATCGATCAATACCCAACAGCCAAAAATGTGCCTGGAATTCTCATCCTCCAATTGGAGGCCCCGATCTATTTTGCCAACTCAAACTACCTGAGAGAAAGGCTTTCAAGGTGGATTACAGATGAAGAACAGAGGATAAAATCATCTGGAGAAACCAGCTTGCAGTATATAATTCTAGACATTTCCGGCGTAAGTAGCATTGACTCAAGTGGAATCAGCATGCTTGAAGAGGTTAAGAAGAGTACTGAAAGAAAGGGTCTCAAACTTGTGCTTGCAAATCCAAGAAGTGAAGTGATAAAAAAGTTAAACGAAGCAAAGTTCATCGAGGCGATCGGACAGGAATGGATCTATCTTACAGTGGGAGAGGCTGTAACAGCTTGCAACTTCATGCTCCACACTTGCAAGCCAAATCCTGTTGCTGCTGAATTAGATTCACCTGTGTAG 1941 44.46 MGNADFECPHRVAIPPKKPFFHSLSSNLKETFFPDDPFKQFKNQPLPTQILLWLKYFIPFLDWAPRYTFDFFKADLVAGITIASLAVPQGISYANLASIPPIIGLYSSFIPPLVYAMFGSSKDIAVGTVAVASLLMSAMLGKEVNPVEHPKQYVQLVFTATFFAGVFQASLGFLRLGLIVDFLSHATIVGFMGGAATVVCLQQLKGITGLLHFTHETDIVSVMRSLFSQIHKWRWESIVLGCCFLFFLLLTRYLSKKKAIFFWINALAPLTSVILGSLLVYLTHAEKHGVQVIGNLKKGLNPPSVSDLVFGSPHLAVAIKTGIIIGIIGLAEGVAVGRSFAAFKNYHIDGNKEMIAFGMMNIVGSCTSCYLTAGPFSRTAVNFNAGCKTAVSNIVMAIALMITLLFLTPFFHYTPLVVLSSIIITAMLGLINYEEVIHLWKIDKFDFVVCLGAYIGVVFGSVETGLIVAITLSLLRVLLIIARPRTLVLGNIPNSTIYRSIDQYPTAKNVPGILILQLEAPIYFANSNYLRERLSRWITDEEQRIKSSGETSLQYIILDISGVSSIDSSGISMLEEVKKSTERKGLKLVLANPRSEVIKKLNEAKFIEAIGQEWIYLTVGEAVTACNFMLHTCKPNPVAAELDSPV 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4732977 4738291 + ClG42_05g0056200.10 Clacu05g0562 248309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0562 646 ProSitePatterns SLC26A transporters signature. 101 122 IPR018045 GO:0008271(InterPro)|GO:0008272(InterPro)
Clacu05g0562 646 PANTHER SULFATE TRANSPORTER 27 626 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu05g0562 646 CDD STAS_SulP_like_sulfate_transporter 504 619 - -
Clacu05g0562 646 Pfam Sulfate permease family 72 451 IPR011547 GO:0016020(InterPro)
Clacu05g0562 646 ProSiteProfiles STAS domain profile. 503 626 IPR002645 -
Clacu05g0562 646 Gene3D STAS domain 483 628 IPR036513 -
Clacu05g0562 646 SUPERFAMILY SpoIIaa-like 506 626 IPR036513 -
Clacu05g0562 646 Pfam STAS domain 504 622 IPR002645 -
Clacu05g0562 646 NCBIfam sulfate permease 59 622 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu05g0562 646 FunFam Sulfate transporter 31 483 629 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0562 Clacu-Chr5:4732977 Clacu06g1097 Clacu-Chr6:20609162 6.90E-200 dispersed
Clacu05g0562 Clacu-Chr5:4732977 Clacu09g0726 Clacu-Chr9:6321830 7.70E-284 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0562 K17471 - csv:101203205 1185.24