Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0563 ATGAAAACTTTAAGCTCCCCTCTCTCAAAATCTCTCTTCCTCATCTCCGTCCTCATCCTCCTCTCCCAACCTTCCCATCAAGCAACTCCGTCACCGACGCCATTTCTCCCAAACCCCAGACTTCTTAAGGCCTACTCCGCTCTCCAAGCTTGGAAACATGCCATCACCGCCGACCCGACCAACTTCACCTCCGATTGGTACGGCCCCAATGTCTGCAACTACTCCGGTGTCTTCTGCGCCCCCGCCCCCGACGACCCCTACGTCCTCACCGTCGCCGGGATCGACCTCAACCACGCCAACCTCTCGGGCACCCTGCCCGACGACCTCGGCCTCCTCACCGACCTTGCTCTGTTCCACATCAACTCCAATCGCTTCTGCGGCACTATCCCCAATTCCTTCCGGTGCCTCACTCTTCTCTTCGAGCTCGATATCAGCAACAATGACTTCTCCGGCGAATTCCCCTCTGTAATTCTCTCTCTCCCAGCACTCAAATTCCTCGATATTCGATTCAACAAATTCCATGGCGATCTCCCTTCTCCCCTGTTTGACTTGAAACTCGATGCTCTGTTCATCAACAACAACGATTTCAAATTTTCCCTACCGGAAAATATCGGCAATTCCCCTGTTTCTGTTCTGGTTTTTGCTAATAACAACATCAATGGCTGTCTCCCCTCTAGTTTATCCAATATGAACAACACACTCAATGAAATTATAATCACGAATAGTGGGTTGATTGGGTGTTTACCGCCGGAAATTGGGTCTTTGAGCAATCTGACCGTCTTCGATGTTAGTGACAACAATCTCGTCGGACCGTTGCCGGAGACGATGGCTGGAATGAAGAAATTGGAGCAGCTAAATGTGGCACATAACCAATTATCCGGCGAGATTCCAGCGAGTATTTGTTCGTTGCCGAAATTGCAGAATTTCACTTACTCGTATAATTTCTTCTGCAGTGAGCCGCCGGTGTGCCTGAAACTTCAGGCCAGTGATGACCAGAAAAATTGTTTGCCGGAAAGGCCACTGCAACGTTCGCCGGAGGAATGCAAAGCTTTCTACTCTTACCCTGTTGATTGCGGCGTCTTTGGGTGTACTCGTCGGCCGCCACCACCGCCGCCATCTTATTGGTGA 1128 50.8 MKTLSSPLSKSLFLISVLILLSQPSHQATPSPTPFLPNPRLLKAYSALQAWKHAITADPTNFTSDWYGPNVCNYSGVFCAPAPDDPYVLTVAGIDLNHANLSGTLPDDLGLLTDLALFHINSNRFCGTIPNSFRCLTLLFELDISNNDFSGEFPSVILSLPALKFLDIRFNKFHGDLPSPLFDLKLDALFINNNDFKFSLPENIGNSPVSVLVFANNNINGCLPSSLSNMNNTLNEIIITNSGLIGCLPPEIGSLSNLTVFDVSDNNLVGPLPETMAGMKKLEQLNVAHNQLSGEIPASICSLPKLQNFTYSYNFFCSEPPVCLKLQASDDQKNCLPERPLQRSPEECKAFYSYPVDCGVFGCTRRPPPPPPSYW 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4743687 4744814 + ClG42_05g0056300.10 Clacu05g0563 248310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0563 375 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 27 369 IPR051582 -
Clacu05g0563 375 Gene3D Ribonuclease Inhibitor 207 334 IPR032675 -
Clacu05g0563 375 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 231 319 - -
Clacu05g0563 375 Pfam Leucine Rich Repeat 139 159 IPR001611 GO:0005515(InterPro)
Clacu05g0563 375 FunFam Leucine-rich repeat extensin-like protein 1 45 206 - -
Clacu05g0563 375 Pfam Leucine rich repeat N-terminal domain 46 79 IPR013210 -
Clacu05g0563 375 SUPERFAMILY L domain-like 44 325 - -
Clacu05g0563 375 Gene3D Ribonuclease Inhibitor 43 206 IPR032675 -
Clacu05g0563 375 Pfam Leucine rich repeat 233 292 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1641 Clacu-Chr3:30050741 Clacu05g0563 Clacu-Chr5:4743687 1.70E-26 dispersed
Clacu05g0563 Clacu-Chr5:4743687 Clacu07g0234 Clacu-Chr7:2774208 4.20E-48 dispersed
Clacu05g0563 Clacu-Chr5:4743687 Clacu11g0393 Clacu-Chr11:3618939 2.10E-39 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0563 - - - 0.0