Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0565 ATGGCAACCTTGATGCATTCTGAATCTCGGCGCTTATATTCTTGGTGGTGGGATAGCCATATTAGCCCCAAAAATTCAAAATGGCTACAGGAGAATCTTACAGACATGGATGCCAAAGTAAAAGCAATGATCAAACTCATCGAAGAAGATGCAGACTCATTTGCGAGAAGAGCAGAAATGTACTATAAGAAACGTCCAGAGCTTATGAAATTAGTTGAGGAATTCTACCGAGCCTACCGTGCTTTAGCTGAAAGATATGACCATGCAACTGCAGAGCTTCGTCATGCACATAAAACCATGGCTCAAGCATTTGACAACCAAATGCCTCCTTTTATGTTTTCTGATGAGTCTTCTGTTTCTGAAGCTGAATCCCACACACCAGAAATCCACCTCCCAAATCATGCACTGCACGACAAAGATGACTTCCACAAGGAGTTGGGGAGTTCATCGTCAACGAACCAACATCCATTAAGAATGGAAGGAGATAATGCTGGGGAATCTAATTCTTGCTCAAGTAAAGGGGGTTTGAAACAGCTCAATGAGATGTTTGCATCAAGAAAAAATGTGCCAGAAAATTTAGAGGTTAGTGAGGGAAGCACTGTATCGCAATTAGTTTTTCATGAAGGTGAATCTGATGACCAAAACTTGCAAAATGTGGAACACCCTCAGTTATCAAGGAAAATTAATGGTCTTAACTCTCAGGTCCTGTGTGAGTCAGAAAGTAATGAAAAATTGGATGCTGAGCTTCAAAATTTAAGAAAAAGACTGAATCAGATGGAAGCTGAAAAGGAAGCTTTCTTTCTTAAATACCAGAATTCTTTGGAGAAGTTATCCAGCCTAGAGAATGAACTTAGTTCTGCTCAAAAGGATGCTAGTGGACTTGACGAAAGAGCGAGCAAAGCTGAAATTGAAATAAAAATATTGAAGGAAGCCCTTCTAGATCTGAAAGCAGAGAAGAATGCTAGCCTTCTACAATATAATCAATGTTTGCAAAAGATATCTAGCTTAGAAAATCAATTATCTGTAGCCCAACAAGATGCTGAAGGACAGAATGAGAGAGCTGCTAAGGCAGAAATTGAAGTTCAGAACCTTGAGCAACAACTTTCCAGATTAGCAGCTGAAAAGGAGGTCAGTCTTCTTCAGTATGAACAATGCCTAAAGAAGATATCTGCCTTAGAGAACAAAATCTCTCTCTCTGAAGATTATGCAAGAATGCTTGATGAACAAATAAAAAGTTCAGAAACTGAAGTGGAAGCACTGAATAGAGCTCTTGTTGAACTGAATAAAGAGAAGGAAATAGTATCTCGACAATATGAGCAGTGCTTGGAGAAAATTGCGAAGATGGAAACTGAAATATCTTATGCTCAAGCTGATGCCCAACGTCTGAAAGGTGAACTTGTGATGGCCAATGCAAAACTGGAGACAACAGAAGAACGGTGTGCTCATTTGGAGCAGTCGAACCATTCGCTGCAGTTTGAGGCAGACAAACTTGTACAGAAGATTGCTATGAAGGATCAAGAGCTTGCAGAAAAGCAAGATGAGTTGAAGAAACTGCAGAGTCTAATGAACGAGGAGCAGTCCCGATTTGTACAAGTCGAGAACACTCTCCACACTCTGCAGAAGTTACATTGTCAATCGCAGGAGGAGCAGAGAGCTCTGACCTTGGAGCTTAAAAATGGTCTCATGATGCTGAAGGATTTGGATATATGCAAACATGGCATGGAGGAAGACCTTCAACGAGTTAAGGATGAAAACAAAATATTGAATGAACTGCATTTTTCTTCCAATACTTCAATGAAGAATTTAGAGGATCAATTATCTGGCTTGAAGGAGATGAAAGAGAAGCTTGAAGAAGTTGTTTCCCAGAAAGAAGAGCAGAGCAGCTTGCTTGAGAAAGAGATCCATCATTTGAGAGAAGAAATTAAGGGTTTGAGTGGAAGATACCAGGGCATAATGAGACAATTGGAGGCCGTAGGGTTGGATCCTCACTCCCTTGAATCTTCTGTAAAGGAATTTCAAGAGGAAAATGCCAAGCTGAGGGAGGCCTGTGAAAACGACAGGAACAAGATAGAAGCACTTTATGAAAAACTTAGTTATATGGATGAACTTGCAAAGGAAAATTCAATTCTCAAGGTATCTCTGGCTGAATTGAATGCTGAATTGGAGAGGTTAAGGGAGAAAGTCAAGGAATCCCAGGACCTTTCCCAGTTTACCCAGGGAGAAAAAACTACTCTTGTTGCAGAGAAATCTTCCTTGCTTTCAAAATTGCAGAATGTAACTGAGAATATGTTGAAACTTCTAGAGAAGAACACATTGCTGGAAGACTCCCTATCTAGTGCAAATAAAGAGCTTGAAGGTTTAAGGGCAAAATCAAAGGGCTTGGAAGAATTCTGCCAGTTGCTCAAGGATGAGAGGTCCAATCTTTTGAATGAAAGAGGCGCACTGGTGGCTCAGCTTGAAAACATTGAACTGAGACTAGGAAACCTGGAAAGGAGGTTTACGAACCTAGAAGAGAAATGTGCTGATCTGGAAAATGACAAAGATTCTGCCTTACATCAAGTTGAAGAATTGAGGTTTTCCCTTCTCATGGAAGAACAAGAGCATACAAGTTACAAGCAGTTGACTGAGGCCAGACTTGCTGGTTTGGAGAACAATGTCCATAACCTACGAGAAGAAAGTAGAGTGAGCAAGGAAGAAATTGAAGAGCTACTAGACAAGGCTGTGAATGCCCAGGTTGAAATCTATATATTGCAGAAGTTTGTTGAGGACTTGGAAGAGAAAAATCTTTCTTTGCTTATTGAATGTGAACAATATGAAGAGGCATCCAAGTTATCAGATAAACTTATTGCTGAATTGGAAGGTGAAAATCTTGAGCAACAAGTTGAAGTAGAATTTATGTACAATGAAATCGATAAATTAAGAGCAGGAATCCGTAAGGTATTAATGGCACTTCAAATTGATCAAGATTGTGGGCAGGGAAATATGAAAGAAGAGAGAATTCTGATACTGGATATTTTGGCCAGAATTGAGGATTTGAAAACTTCCGTGTTCAAAAACAAGGACAAGAAGCAGCAATTGCTAGTTCAGAACTCGGTTTTATTAACTCTTTTCAAGCAACTGAGTTTAGAGAGTGAAGAACTTCTGTCAGAGAAAGAGAACATTGTGCAGGAGTTAAAGATCATGAAGGGCCAACTAGCAATGCATGAAAATGACAAGCATGAGCTTCTGAAGACGAAAAGCCAGTTGATGATGCAAGTTAGCCAGTGGGAGCAGCATGAGCTACTGCTGAAGGCAGAGATTGAAACTCTAAATGAGAAGCTAATAAATCTGCAAGGGGCCTGTCTCATGCTGGAAAAAGAAAATTGTAATGTTGCTGAAGAAAAGAAATCATTGCTGAAGAAATTTCTGGACCTTGAAGAGGACAAGAATATTATTCAACAAGAGCAGCAGAATTTAATCATCCAGGAAGTGATTGCTTTCAACATCCTATCCTCAATTTTTGAAAGCTTCAAAATAGAGAAGTTCTTGGAAATAGAAAATCTTGTTCAAGACATCTCTCATCTCCAAGTGGTTAATTCTGATACAAGGGAAGAAGTTGGAAAGTTGGCACAGAAATTTCAGTTGAAGGAAGTGGAAAATTTGCATTTAAATGGATCAGTACAGAAATTGGTCAAGGACCTACATGAAGCAGAAGACTTGAACGATGAACTTAACTATCAAATTTTACTTGGAAACGATTTTCTGAAGATGAAGGCCCAAGAGCTTTCTGAAACAGAAGAGGAACTTAAAAATTCACAAAACTTCAACATGAAATTGTCTGGGGCAGTCGAGGAGCTGAAGATGGAAGGTAAAGAATCAACTATGATCAGACACAGACTACAGAATGGGAATCGTGAACTTTCTGAAAAGTGCTTAAGCCAGGAGAATGATATTCAATGCCTCTGTAAAGTAAATGAAAATTTAAAATCTGAAGTTGATTTGTTGAATGAGGAGGTCGAGAAATGCAAAATTAGAGAGGAGTGTCTGAGTTTAGAGCTACAGGAAAGAAGAGATGAATTTGAGCTCTGGGAGGCTGAAGCCACAACATTTTACTTTGATCTTCAAATCTCATCGATACGGGAGGTTTTATACGAACACAAGGTTCATGAACTTGCACAAGCTTGTGAAAATGCTGGGGATGAGAACACTGCAAAAACTATGGAGATTGAACAACTCAGAGAAAGAGTAAGTTTCCTGGAAACTGAAATCAGAGAAATGGAGGCACAGTTGTCTGCATATAAGCCCGCCATAGCTTCTCTGAGGGAGGATGTAGAATCACTCAAGCATATTGTTCTTCCTCAGACTAGGGATACCTGTAGAGGTTTTATAGGAGAAGAGGGCGAGGAAACCACAATTCATGTTCATCACAGGAGCTGTAATGTCCACCACAGAGATGAGATATTGAATTTGCAGAAGATTGGGGCCATGATAAAAGCAGTTGAGAAGGCTGTGATCAAGGAAAAGGAGAAACTCAACAAAGAAGCTGCTGACAAACATGTCAAAGACTTCAAATCAGAAGGAGCCTCACGTCAGAAAGTGACAATGAAGGAAGGGAAAGATTTGAGGGATGAAATTACTGGCAATCAGAAGGCAAGAAAGAATAAACCCGACAATGGAATATTAATGAAGGATATTCCACTGGATCATGTATCAGATAGTTCTTTCCAGAGAAGAAGCAAAAGGGAAAGTAGTGAAACCAATGATCAAATGCTTAAGTTGTGGGAAACTGCTGAGCAGGATAGCGACCAGAATTTGATTGATGGCTCGCCACCACAAAGCCCGCCAGACCCACAAGTTGAGTACCCGCAGTTGGAAATTGTAGAACATAAGAGTCCAGATTTTTCTTCAGAACTGCAAGCAGAGAAGGAGTTGAGCATTGATAGATTGGACCTATCACCCAGCATTAGAGAACGAATTCGAAGAGGCCGAAAAGGAAAGCTTTTAGAGAGACTTGATTCAGATGTCATTCAGTTGACAGGTCTTCTAACAAGCGTTCAAGATTTGAAAAAGAGAATTGAAGTGAACACCCTTGAAATGGCTAGAAACAATGAATATGACACAGTCGAGAAACATATTAAAGAAGTTGAGGAAGCCATTTTTCAACAAGTAAATATCAATGGTCAACTGAAGCAGAATTTGGAACGCAGTCCCTCATCTTTCGAGCGAAGACCCTCAGTTGAACTCGAGGCAACTGGAAACATCCCCTTAAGCAAACTAACAGAACAGGCACAAAGAGGATCCGAGAAGATAGGAAAACTACAATTCGAGGTACAGAACATTCAGCGGGTTGTGCTGAAACTTGAAGCTGAGAAGAAAAGAAAAGGGAAGAACAGATTCTCCAAGAGTAAACCTGGTGTTATTCTGAGAGACTTCATCTACAGAAGCGGAAAACGCAGCGAAAGACGAAAGAAGGCATGTTCTTGTGGGTGCACAAGACCTACTACTCATGGAGACTGA 5496 40.08 MATLMHSESRRLYSWWWDSHISPKNSKWLQENLTDMDAKVKAMIKLIEEDADSFARRAEMYYKKRPELMKLVEEFYRAYRALAERYDHATAELRHAHKTMAQAFDNQMPPFMFSDESSVSEAESHTPEIHLPNHALHDKDDFHKELGSSSSTNQHPLRMEGDNAGESNSCSSKGGLKQLNEMFASRKNVPENLEVSEGSTVSQLVFHEGESDDQNLQNVEHPQLSRKINGLNSQVLCESESNEKLDAELQNLRKRLNQMEAEKEAFFLKYQNSLEKLSSLENELSSAQKDASGLDERASKAEIEIKILKEALLDLKAEKNASLLQYNQCLQKISSLENQLSVAQQDAEGQNERAAKAEIEVQNLEQQLSRLAAEKEVSLLQYEQCLKKISALENKISLSEDYARMLDEQIKSSETEVEALNRALVELNKEKEIVSRQYEQCLEKIAKMETEISYAQADAQRLKGELVMANAKLETTEERCAHLEQSNHSLQFEADKLVQKIAMKDQELAEKQDELKKLQSLMNEEQSRFVQVENTLHTLQKLHCQSQEEQRALTLELKNGLMMLKDLDICKHGMEEDLQRVKDENKILNELHFSSNTSMKNLEDQLSGLKEMKEKLEEVVSQKEEQSSLLEKEIHHLREEIKGLSGRYQGIMRQLEAVGLDPHSLESSVKEFQEENAKLREACENDRNKIEALYEKLSYMDELAKENSILKVSLAELNAELERLREKVKESQDLSQFTQGEKTTLVAEKSSLLSKLQNVTENMLKLLEKNTLLEDSLSSANKELEGLRAKSKGLEEFCQLLKDERSNLLNERGALVAQLENIELRLGNLERRFTNLEEKCADLENDKDSALHQVEELRFSLLMEEQEHTSYKQLTEARLAGLENNVHNLREESRVSKEEIEELLDKAVNAQVEIYILQKFVEDLEEKNLSLLIECEQYEEASKLSDKLIAELEGENLEQQVEVEFMYNEIDKLRAGIRKVLMALQIDQDCGQGNMKEERILILDILARIEDLKTSVFKNKDKKQQLLVQNSVLLTLFKQLSLESEELLSEKENIVQELKIMKGQLAMHENDKHELLKTKSQLMMQVSQWEQHELLLKAEIETLNEKLINLQGACLMLEKENCNVAEEKKSLLKKFLDLEEDKNIIQQEQQNLIIQEVIAFNILSSIFESFKIEKFLEIENLVQDISHLQVVNSDTREEVGKLAQKFQLKEVENLHLNGSVQKLVKDLHEAEDLNDELNYQILLGNDFLKMKAQELSETEEELKNSQNFNMKLSGAVEELKMEGKESTMIRHRLQNGNRELSEKCLSQENDIQCLCKVNENLKSEVDLLNEEVEKCKIREECLSLELQERRDEFELWEAEATTFYFDLQISSIREVLYEHKVHELAQACENAGDENTAKTMEIEQLRERVSFLETEIREMEAQLSAYKPAIASLREDVESLKHIVLPQTRDTCRGFIGEEGEETTIHVHHRSCNVHHRDEILNLQKIGAMIKAVEKAVIKEKEKLNKEAADKHVKDFKSEGASRQKVTMKEGKDLRDEITGNQKARKNKPDNGILMKDIPLDHVSDSSFQRRSKRESSETNDQMLKLWETAEQDSDQNLIDGSPPQSPPDPQVEYPQLEIVEHKSPDFSSELQAEKELSIDRLDLSPSIRERIRRGRKGKLLERLDSDVIQLTGLLTSVQDLKKRIEVNTLEMARNNEYDTVEKHIKEVEEAIFQQVNINGQLKQNLERSPSSFERRPSVELEATGNIPLSKLTEQAQRGSEKIGKLQFEVQNIQRVVLKLEAEKKRKGKNRFSKSKPGVILRDFIYRSGKRSERRKKACSCGCTRPTTHGD 1831
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4751604 4758428 - ClG42_05g0056500.10 Clacu05g0565 248312

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0565 1831 PANTHER PROTEIN NETWORKED 4A 350 1062 IPR051861 -
Clacu05g0565 1831 Pfam KIP1-like protein 14 87 IPR011684 GO:0003779(InterPro)
Clacu05g0565 1831 MobiDBLite consensus disorder prediction 147 175 - -
Clacu05g0565 1831 Coils Coil 1128 1148 - -
Clacu05g0565 1831 Coils Coil 669 696 - -
Clacu05g0565 1831 Coils Coil 756 790 - -
Clacu05g0565 1831 Coils Coil 1245 1265 - -
Clacu05g0565 1831 Coils Coil 326 381 - -
Clacu05g0565 1831 Coils Coil 1311 1338 - -
Clacu05g0565 1831 MobiDBLite consensus disorder prediction 140 175 - -
Clacu05g0565 1831 Coils Coil 949 969 - -
Clacu05g0565 1831 MobiDBLite consensus disorder prediction 1508 1580 - -
Clacu05g0565 1831 Coils Coil 1388 1422 - -
Clacu05g0565 1831 Coils Coil 812 853 - -
Clacu05g0565 1831 Coils Coil 700 741 - -
Clacu05g0565 1831 Coils Coil 1100 1120 - -
Clacu05g0565 1831 MobiDBLite consensus disorder prediction 1508 1552 - -
Clacu05g0565 1831 Coils Coil 872 906 - -
Clacu05g0565 1831 Coils Coil 403 535 - -
Clacu05g0565 1831 MobiDBLite consensus disorder prediction 1563 1580 - -
Clacu05g0565 1831 Coils Coil 1220 1240 - -
Clacu05g0565 1831 Coils Coil 571 591 - -
Clacu05g0565 1831 Coils Coil 921 941 - -
Clacu05g0565 1831 Coils Coil 235 318 - -
Clacu05g0565 1831 Coils Coil 1037 1071 - -
Clacu05g0565 1831 ProSiteProfiles Networked (NET) actin-binding (NAB) domain profile. 13 93 IPR011684 GO:0003779(InterPro)
Clacu05g0565 1831 SUPERFAMILY Tropomyosin 222 447 - -
Clacu05g0565 1831 Coils Coil 599 647 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0565 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0007 Clacu-Chr3:308069 Clacu05g0565 Clacu-Chr5:4751604 1.80E-32 dispersed
Clacu05g0565 Clacu-Chr5:4751604 Clacu11g1642 Clacu-Chr11:27580357 1.60E-28 dispersed
Clacu10g0762 Clacu-Chr10:11306360 Clacu05g0565 Clacu-Chr5:4751604 6.30E-32 transposed
Clacu05g0565 Clacu-Chr5:4751604 Clacu07g0038 Clacu-Chr7:720567 2.70E-140 wgd
Clacu05g0565 Clacu-Chr5:4751604 Clacu09g0724 Clacu-Chr9:6309365 8.00E-177 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g541 . . . . . Bpe14g01206 . . . . Cma06g01386 Cma14g01737 Car06g01195 Car14g01566 Sed02g1335 Cpe08g00276 Cpe03g01456 Bhi01g00773 Tan10g0800 Cmetu06g0678 . . . . . . . . . . . . . . . Lsi05g01629 . . Cme06g00583 Blo02g00526 Blo07g00230 Bda11g00592 Bda13g00105 . Bpe13g00592 Bma02g00829 . . Cmo06g01392 Cmo14g01776 . . . . . . . . . . . . . Cla05g00517 Cam05g0568 Cec05g0580 Cco05g0578 Clacu05g0565 Cmu05g0536 Cre05g0605 . Csa03g01300 Chy06g00554 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003822 2 2 2 1 2 1 2 1 1 1 1 1 4 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 2 44