Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0568 ATGAATTCGGTAAAAAAGAAGGAGGAATCTTGGCTCATCCATCCGTTGGATACGTGCGTACAGTCAACATTTACGGTCTTCTTCTTTCTGGCGAGGGCTCCTTTTAGGGTCTGCGGGTCCGATTATGCTGAGAGGTCTAGAATTCCTTGTATTCGAGGTGTACTATTTGAGTTATCTGTGTTGATCTTAGCAATGAATTCGAAAGGCAATGATATGGGGGGTTCTCCGGTCCCAAAGGAGACACAGAGCCAGGATAGAACTCTGAACTCAAAGGTGGCTGGTATGGGAAGCATTAGCAGCAAAGATATGATATTCAGAGCAGATATGATTGATTTGAAAACTCTAGATATGCAGCTAGAGAAGCACTTGAGCCGTGTCTGGTCAAAGAGCATTGAGAATCAAAGGCCTAAGGATGTGTGGGAGATTGATTTGTCTAAACTTGAGATCATAAGGCTGGTTGCTCAAGGGACTTATGGAACAGTATACCGGGGTACATATGACAATCAAGATGTTGCAGTGAAGGTATTGGACTGGGGGGAGGAGGGTCTAGCCACAACGGCTGAAACTGCTGCTTTGCGGGCATCATTTCGGCAAGAGGTTGCTGTTTGGCACAAGCTTGATCATCCTAATGTTACAAAATTTGTCGGAGCTTCAATGGGAGCAACAAATCTTAAAATTCCAATGGATGAACAAAATTCGTTTCCATCTAGGGCCTGTTGCGTTGTTGTTGAGTTTGTTCCTGGTGGGACATTAAAACAATACTTGATTAGATTCTGTAGAAGGAAACTTAGCTTTAGGGAAGTGATTAAATTAGCTTTGGAACTCTCTAGAGGGCTTAGCTATCTACACTCCAAGAAGATTGTGCATCGTGATGTCAAAACTGAAAATATGTTGATGACAAGCGACTACGCTGTCAAAATTGCTGATTTTGGGGTTGCCCGTGTTGAAGCTCAGAATCCAAGAGATATGACTGGGGAAACTGGTACTCTTGGATACATGGCCCCAGAGGTTCTTCAAGGGAAGCCATACAATAGAAGATGTGATGTCTATAGCTTTGGCATCTGCTTGTGGGAAATTTACTGCTGTGATATGCCATACGCCGATCTTAGTTTTGCTGACGTGTCATCTGCAGTTGTTCGACAGAATCTGCGACCCAGTATCCCGAGATGCTGTCCAAGTTCTCTGGCAAATGTGATGAAGAAATGCTGGGATGCGAATCCAGCCAAACGCCCTGAAATGCATGAGGTTGTCAAAATGTTGGAAGCCATTGATACAAGCAGAGGAGGGGGGATGATTTCTCCTGATGACACTAGCTGTTTATGTTTCAGGCCTTTCGGCAAGGTCCGTGGACCATAA 1356 44.4 MNSVKKKEESWLIHPLDTCVQSTFTVFFFLARAPFRVCGSDYAERSRIPCIRGVLFELSVLILAMNSKGNDMGGSPVPKETQSQDRTLNSKVAGMGSISSKDMIFRADMIDLKTLDMQLEKHLSRVWSKSIENQRPKDVWEIDLSKLEIIRLVAQGTYGTVYRGTYDNQDVAVKVLDWGEEGLATTAETAALRASFRQEVAVWHKLDHPNVTKFVGASMGATNLKIPMDEQNSFPSRACCVVVEFVPGGTLKQYLIRFCRRKLSFREVIKLALELSRGLSYLHSKKIVHRDVKTENMLMTSDYAVKIADFGVARVEAQNPRDMTGETGTLGYMAPEVLQGKPYNRRCDVYSFGICLWEIYCCDMPYADLSFADVSSAVVRQNLRPSIPRCCPSSLANVMKKCWDANPAKRPEMHEVVKMLEAIDTSRGGGMISPDDTSCLCFRPFGKVRGP 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4788853 4793612 + ClG42_05g0056800.10 Clacu05g0568 248315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0568 451 CDD STKc_MAP3K-like 153 420 - -
Clacu05g0568 451 SUPERFAMILY Protein kinase-like (PK-like) 127 420 IPR011009 -
Clacu05g0568 451 ProSiteProfiles Protein kinase domain profile. 147 423 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g0568 451 Gene3D Transferase(Phosphotransferase) domain 1 246 431 - -
Clacu05g0568 451 SMART serkin_6 147 423 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g0568 451 PRINTS Tyrosine kinase catalytic domain signature 281 299 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu05g0568 451 PRINTS Tyrosine kinase catalytic domain signature 347 369 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu05g0568 451 PRINTS Tyrosine kinase catalytic domain signature 243 256 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu05g0568 451 PRINTS Tyrosine kinase catalytic domain signature 391 413 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu05g0568 451 Pfam Protein tyrosine and serine/threonine kinase 148 420 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu05g0568 451 Gene3D Phosphorylase Kinase; domain 1 137 230 - -
Clacu05g0568 451 ProSitePatterns Serine/Threonine protein kinases active-site signature. 287 299 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu05g0568 451 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 90 421 IPR051681 GO:0004674(PANTHER)|GO:0005886(PANTHER)
Clacu05g0568 451 FunFam Kinase suppressor of Ras 1 136 230 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0568 Clacu-Chr5:4788853 Clacu10g1415 Clacu-Chr10:27302698 4.70E-139 dispersed
Clacu05g0568 Clacu-Chr5:4788853 Clacu09g0722 Clacu-Chr9:6264419 7.50E-161 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73547 PF07714 PK_Tyr_Ser-Thr 1.30E-60 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0568 - - - 0.0