Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0629 ATGGCTCATATTGCTGTGGAAAGAAATAGGAGAAGGCAAATGAATGAACATCTTAGGGTTTTGAGATCTTTGACTCCTTGTTTCTATATCAAAAGGGGAGATCAAGCCTCGATTATTGGGGGAGTCATAGAGTTTATCAAGGAGTTGCATCAAGTTTTACAATCGTTGGAGTCCAACAAACGGAGGAGGAAGAGTATAAGCCCTAGCCCTGGTCCGAGCCCGAGGCCGCAATCAATGGCGGGATCCAATAATGGCTCGCTTGGATTTGAAAATGGAGTTGATGTCGTCGGAGCATGTTGCAATTCATCGGTCGCAGATGTCGAAGCGAAGATTTCGGGTTCAAACGTGGTTTTGAAGATCATTTCCCGCCGGATTCCTGGTCAACTTTCGAAGATGATTGGTGTCTTCGAGAGGCTCTCCTTTGAGGTTCTTCATCTCAACATTAGTAGTATGGATGACACAGTTCTGTACTCTTTTGTTGTCAAGATAGGGCTTGAATGTCAACTAAGTTTGGAGGAACTAGCTTATGAAGTTCAACAAAGCTTCTGCTCTCAAGTGTATTTATGCCAATGA 573 43.8 MAHIAVERNRRRQMNEHLRVLRSLTPCFYIKRGDQASIIGGVIEFIKELHQVLQSLESNKRRRKSISPSPGPSPRPQSMAGSNNGSLGFENGVDVVGACCNSSVADVEAKISGSNVVLKIISRRIPGQLSKMIGVFERLSFEVLHLNISSMDDTVLYSFVVKIGLECQLSLEELAYEVQQSFCSQVYLCQ 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5216421 5218074 + ClG42_05g0062900.10 Clacu05g0629 248376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0629 190 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 49 IPR011598 GO:0046983(InterPro)
Clacu05g0629 190 SMART finulus 4 55 IPR011598 GO:0046983(InterPro)
Clacu05g0629 190 CDD bHLH_AtFAMA_like 1 64 - -
Clacu05g0629 190 Gene3D - 1 66 IPR036638 GO:0046983(InterPro)
Clacu05g0629 190 Pfam Helix-loop-helix DNA-binding domain 1 50 IPR011598 GO:0046983(InterPro)
Clacu05g0629 190 MobiDBLite consensus disorder prediction 59 83 - -
Clacu05g0629 190 FunFam Transcription factor MUTE 1 67 - -
Clacu05g0629 190 PANTHER TRANSCRIPTION FACTOR FAMA 1 182 IPR044283 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010052(InterPro)|GO:0010374(PANTHER)|GO:0045893(PANTHER)
Clacu05g0629 190 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1 63 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0377 Clacu-Chr5:3232928 Clacu05g0629 Clacu-Chr5:5216421 8.80E-38 dispersed
Clacu05g0629 Clacu-Chr5:5216421 Clacu05g1029 Clacu-Chr5:9107520 2.40E-36 dispersed
Clacu05g0629 Clacu-Chr5:5216421 Clacu08g1291 Clacu-Chr8:22829926 1.90E-28 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47627 PF00010 HLH 1.00E-07 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0629 - - - 0.0