Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0630 ATGGGTATTTCATGGAGTAACAGAAGAAGAAACAATTATCTTCAAAACCCACCCCCGCCTCCTCCTCCTCCCTACCTTTCTTCTTCCTCTTTCTATTACCCCTCTGAACCTCAATCTCTTTCTCCTACTCCACCTCCGCCGCTGCAGACCCATCAGTTCACCAATTCCCACCCTCCTCCCCCGCACAGCCACCCTTACGGTCCAACTTCTCAGCCGCCACCTCTGCCGCCGATTCCTCATCCCCCTGCCCCTGCCCCCGCTCCTCACCCTTATTACTTCTCCGGTGGGTACAATTCGTGTAATTATGGAAATTCTTCGATGGGGCGTTTCAATTTTCACCCTTATTATGCTAATCAGAGTAATGGGTGGTCCCAAATTCGGCCGGCCATGGGTCCGCCGTTGCTTCCGCCACCGTCCTTGCCGTTTGTGGAGCATCGGCAAGCAAAGAAGGTTAGAAATGATGTGAATGTACATAAGGATACTTTAAGGATTGAGGTGGACGAGCAGAACCCTGATCATCATTTGGTTTCTTTCGTTTTCGATGCGTTGTATGATGGAAGCGTAACCATTCTATTTTTTGCCAAGGAGGAACCCAACTGTAGGTTCGTTCCAGTATATCCTGATGCCTTTAAGCCAGTCAAAATCCCATTTCAGAAGGGTCCTGCTCAGAAATTCTTTCAGCCTGTGGGAACTGGCTTTGACTTAGGGTTTTTCGAGTTGGAGGACCTCTCAAAACCATCACCTGGAGAAGACATTTTCCCTCTTGTTATATCAGCTGAGACTTGTTCACCCTCTCAATCTGATGAAGAACAAATTGGTGAGCCTCAGCGAGATAATTCACACATGCAAATCACTCAAGCTGTTTTGGAGAAGAAAAATGGTGGTCTTTTCCAGGTTAGAGTGATTAGGCAACTACTATGGATTGATGGAGTGAGATATGAGTTGCGTGAAATATTTGGAATAGGGAGTTCATCAGCAGAAGGTTTTGACGATAATGACACCGGGAAGGAGTGTGTGATTTGCATGACTGAACCCAAGGATACCGCTGTATTACCATGCCGACATTTGTGCATGTGCAGTGATTGTGCCAAGGAACTGAGGCTTCAATCTAATAAATGTCCTATCTGTCGTCAACCGATTGAAGAACTTATAGAAATCAAGATAAATAATAGCGACCATGTAAAGTGGCTGTTTAGACCAGAAGCCCCTCAATGTGACCTTTATAAGAACATATGGGTTGGATTTAGAAGTGCATGGGTCTATGACCTACGTGGGTTTGAAGAGCTACATGGATTCTATGTAATATTGAACTTCCCTCGAGGAGCTATGAGTAAAGAAGAGTTTTTGAAGATCCAGAAATGTGTTTTGAAGGTGAACATTCACTGTGATGGATGTAAGCACAAGGTGAAGAAAATCTTGCAGAAAATCGATGGTGTTTTCACCACCGAGATAGATGCAGAACAGGGGAAGGTTACAGTGACCGGGAACGTAGATGCCGCCGTACTCATCAAGAAGCTGTCAAAATCCGGCAAACATGCAGAGATTTGGGGCAGCCAACCGGCAAACAACAACAAAAATCAGCAAAACAACATAGCTAATCAGATGAAGAACATGCAAATTGATAATGCGAAAGGTGGGAACAACAACAAGGGCCAGAACCAGAAGGGCGGCGCTGCAGGCGGCGGCGGTGGTGGTGGCAATGGAAATAACCTGCCTAAAGGTGGACAAGGGCAAGGGTTGCCACCGTCACAGCTTCAGCAGCTACAAGCAATGAAAGGGTTTCAAGATCTGAAGCTCCCACCTCAATTTAAAGGCTTGAAATTGCCCGTTAAAGATCAGAACCCGAATCTTCCCAAGGCTGGGAAGTTCAATTTGCACGAGGGTGATGATCTGAGCGATGAGGATGATCTTGATGACTATGATGATGAAGATGATTATGACGATGACGATGAGTTTGACGATGATTTAGGTAATCTTCACCTCCCTCCGGCGAATAAGATGAAACCCATGATGGGGAATGCACAGATGCCGAAAATGATGATGAGCGGCAATCATCCGCCGGTGATGAATGGCCCTGCCGGCGGTGGAAATGGCGGAGGTAACGGAAAGAAAGGCGGTGGAGCGGTGCCGGTTCAGGGGAATAACAATGCAAAGAATGGAAACGGCGGAGGAGGTAAAGGGAATGGCGGTGGAGGTGGAGGTGGAGGTGGAGGTGGTAGCAACCAAAAACAGAGCGGCGGAGGAGGTGGAGGAAAGAACAACGGTGGCGGCGGTGGCGGTGGTGGAGGCAATAACAAAACTGGCCATGCCGGTGGGAATGGGAGTAATAATGGGATGAACGGCGTTCAAAAGGCAGTCGGTGGGGCAAACGGAATGGGCCATGATTTACAGAGCTTGGTCGGAGCTCATGGATTGGGAATGTCCAATTTGGGTCAAATGGGTGACCGGCCGATGAGCCAAATGGGCAATCTTCCGGCGGTACAAGGCCTTCCCGCCCCAGCGCCAACCATGAACGGCAACGGCGGCGGTGGTGGCGGCGGTAGGTTTTCGCCGGAGGGCATGGCGGGGAACCCTTACCAACAGCACCCACAGCAGCAGTACATGGCGCAAATGATGAACCAACAACAACACCACGCGCTTGGGCACCAACCGATGATGTACGCGCGGCCACCGCCAGCCGTAAATTACGTGCCGCCGCCGTACCCATACCCATATCCACCACCGTACCACAACCCATATCCCCCAACGCAGCCAGAACCCTACACATATTTTAGCGACGAGAACCCCTCAAGTTGTAACATCATGTGA 2808 49.25 MGISWSNRRRNNYLQNPPPPPPPPYLSSSSFYYPSEPQSLSPTPPPPLQTHQFTNSHPPPPHSHPYGPTSQPPPLPPIPHPPAPAPAPHPYYFSGGYNSCNYGNSSMGRFNFHPYYANQSNGWSQIRPAMGPPLLPPPSLPFVEHRQAKKVRNDVNVHKDTLRIEVDEQNPDHHLVSFVFDALYDGSVTILFFAKEEPNCRFVPVYPDAFKPVKIPFQKGPAQKFFQPVGTGFDLGFFELEDLSKPSPGEDIFPLVISAETCSPSQSDEEQIGEPQRDNSHMQITQAVLEKKNGGLFQVRVIRQLLWIDGVRYELREIFGIGSSSAEGFDDNDTGKECVICMTEPKDTAVLPCRHLCMCSDCAKELRLQSNKCPICRQPIEELIEIKINNSDHVKWLFRPEAPQCDLYKNIWVGFRSAWVYDLRGFEELHGFYVILNFPRGAMSKEEFLKIQKCVLKVNIHCDGCKHKVKKILQKIDGVFTTEIDAEQGKVTVTGNVDAAVLIKKLSKSGKHAEIWGSQPANNNKNQQNNIANQMKNMQIDNAKGGNNNKGQNQKGGAAGGGGGGGNGNNLPKGGQGQGLPPSQLQQLQAMKGFQDLKLPPQFKGLKLPVKDQNPNLPKAGKFNLHEGDDLSDEDDLDDYDDEDDYDDDDEFDDDLGNLHLPPANKMKPMMGNAQMPKMMMSGNHPPVMNGPAGGGNGGGNGKKGGGAVPVQGNNNAKNGNGGGGKGNGGGGGGGGGGGSNQKQSGGGGGGKNNGGGGGGGGGNNKTGHAGGNGSNNGMNGVQKAVGGANGMGHDLQSLVGAHGLGMSNLGQMGDRPMSQMGNLPAVQGLPAPAPTMNGNGGGGGGGRFSPEGMAGNPYQQHPQQQYMAQMMNQQQHHALGHQPMMYARPPPAVNYVPPPYPYPYPPPYHNPYPPTQPEPYTYFSDENPSSCNIM 935
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5236426 5246530 - ClG42_05g0063000.10 Clacu05g0630 248377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0630 935 MobiDBLite consensus disorder prediction 38 83 - -
Clacu05g0630 935 FunFam probable E3 ubiquitin-protein ligase LOG2 322 387 - -
Clacu05g0630 935 MobiDBLite consensus disorder prediction 540 555 - -
Clacu05g0630 935 SUPERFAMILY HMA, heavy metal-associated domain 452 517 IPR036163 GO:0046872(InterPro)
Clacu05g0630 935 ProSiteProfiles Zinc finger RING-type profile. 338 377 IPR001841 -
Clacu05g0630 935 MobiDBLite consensus disorder prediction 838 860 - -
Clacu05g0630 935 MobiDBLite consensus disorder prediction 768 783 - -
Clacu05g0630 935 Pfam Heavy-metal-associated domain 456 512 IPR006121 GO:0046872(InterPro)
Clacu05g0630 935 MobiDBLite consensus disorder prediction 605 790 - -
Clacu05g0630 935 MobiDBLite consensus disorder prediction 14 28 - -
Clacu05g0630 935 MobiDBLite consensus disorder prediction 1 83 - -
Clacu05g0630 935 Gene3D - 451 523 - -
Clacu05g0630 935 Pfam Zinc finger, C3HC4 type (RING finger) 336 382 - -
Clacu05g0630 935 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 323 387 IPR013083 -
Clacu05g0630 935 MobiDBLite consensus disorder prediction 630 655 - -
Clacu05g0630 935 CDD HMA 455 514 IPR006121 GO:0046872(InterPro)
Clacu05g0630 935 SMART ring_2 338 376 IPR001841 -
Clacu05g0630 935 CDD mRING-HC-C3HC5_MGRN1-like 336 377 IPR045195 -
Clacu05g0630 935 ProSiteProfiles Heavy-metal-associated domain profile. 451 514 IPR006121 GO:0046872(InterPro)
Clacu05g0630 935 PANTHER MAHOGUNIN 70 391 IPR045194 GO:0016567(PANTHER)|GO:0061630(InterPro)|GO:0061630(PANTHER)
Clacu05g0630 935 MobiDBLite consensus disorder prediction 540 583 - -
Clacu05g0630 935 SUPERFAMILY RING/U-box 337 383 - -
Clacu05g0630 935 FunFam Copper transport protein ATOX1 450 519 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1589 Clacu-Chr2:29244411 Clacu05g0630 Clacu-Chr5:5236426 3.90E-16 dispersed
Clacu03g1745 Clacu-Chr3:31239295 Clacu05g0630 Clacu-Chr5:5236426 3.70E-17 dispersed
Clacu05g0630 Clacu-Chr5:5236426 Clacu05g0700 Clacu-Chr5:5930647 3.70E-21 dispersed
Clacu03g1721 Clacu-Chr3:31042541 Clacu05g0630 Clacu-Chr5:5236426 4.10E-10 transposed
Clacu05g1246 Clacu-Chr5:11867987 Clacu05g0630 Clacu-Chr5:5236426 1.20E-20 transposed
Clacu10g2007 Clacu-Chr10:33559349 Clacu05g0630 Clacu-Chr5:5236426 2.10E-76 transposed
Clacu05g0630 Clacu-Chr5:5236426 Clacu06g0576 Clacu-Chr6:6529229 6.40E-13 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0630 K27504 - csv:101203938 679.093