Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0646 ATGGGTTGTGTTCTTGGAAAGTGTTGCACTTCCAGTCGTTACCAGCCGTCTTCCGACGGCGATATCACCCAATTTGGTGATGCCCCGCCGTGTAGTTTACATGGAAAACATATACTAACCGGAAGGTCATTGGAGTCTGTTCGTGTGCCTTCTCACAACTACAATTTGGAGTATTCGCTTCTGACCCAGCGCGGCTACTACCCTGATTCCCCTGATAAAGAAAACCAAGATAGTTTCTGTGTTAGTACACAAATTCGAGGTAACCCGAATATCCACATCTTTGGTGTTTTTGATGGTCATGGTCAATTTGGAATGCAGTGTTCGAATTTCGTTAAGGATAGGGTTGTGCAGCTATTGTGTAATGATTCAAAATTGTTGGAAGATCCTGTTAAAGCTTATAATTCGGCATTTTTGACTGCGAATGATGAATTGCATAATAGTGAGATTGATGATTCCATGAGTGGTACAACAGCTATTACTGTTCTTGTTCTTGGGAATACACTTTACGTTGCGAATGTGGGTGATTCGAGGGCGGTAGTGGCTGTTAAAAATGGGAATCGAATTGTGGCTGAGGACATGTCTCATGATCAAACACCATTTAGGAAGGATGAGTGTGAGAGAGTAAAGCTAGCTGGGGCTAGGGTTTTGACCATTGATCAAATTGAGGGGCTTAGAGATCCGGATATTCAAGTATGGGGTGATGAGGAGAGTGAGGGAAATGATCCTCCTCGATTGTGGTTTCCTAATAGTTTGTATCCTGGTACTGCATTTACGCGGAGTGTAGGAGACAGTGCAGCGGAGAAGATTGGTGTCACTGCTGTCCCTGAGGTTTCAGTTGTTCAACTGACTCAAAACCATCTTTTCTTTGTCGTTGCAAGCGATGGAGTTTTCGAGTTCCTTACAAGTCAAGCTGTTGTTGATATGGCTGCAAGGTATGCCGATCCGCGGGATGCATGCTCTGCTATTGCTGGAGAATCATATAAGCTATGGTTGGAGCATGAAAACCGGACAGATGATATAACAATCATCATTGTTCACATCAAAGGCCTCTCTAATTCAGGTGGTACTGGAACTGTTGGGCTGAATGGGGTCCGCATAAGGCATTCAAATTCAGAGCGGGGAACCTCCGAGATATCAGCTACCACTGGAAGTTCAGAAGCTTTTCGCTCCTTCAGAAGTGATTTATCAGATCTGCATATCTCTCAGCATGTGGGTTTGATGAACAGGAGTACAGCAATTGTCGTTCCATCTCCTGCGCAGCACCGACCGTTAGAAGTGGAAGTGGGCTAA 1290 44.73 MGCVLGKCCTSSRYQPSSDGDITQFGDAPPCSLHGKHILTGRSLESVRVPSHNYNLEYSLLTQRGYYPDSPDKENQDSFCVSTQIRGNPNIHIFGVFDGHGQFGMQCSNFVKDRVVQLLCNDSKLLEDPVKAYNSAFLTANDELHNSEIDDSMSGTTAITVLVLGNTLYVANVGDSRAVVAVKNGNRIVAEDMSHDQTPFRKDECERVKLAGARVLTIDQIEGLRDPDIQVWGDEESEGNDPPRLWFPNSLYPGTAFTRSVGDSAAEKIGVTAVPEVSVVQLTQNHLFFVVASDGVFEFLTSQAVVDMAARYADPRDACSAIAGESYKLWLEHENRTDDITIIIVHIKGLSNSGGTGTVGLNGVRIRHSNSERGTSEISATTGSSEAFRSFRSDLSDLHISQHVGLMNRSTAIVVPSPAQHRPLEVEVG 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5375511 5378995 + ClG42_05g0064600.10 Clacu05g0646 248393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0646 429 ProSitePatterns PPM-type phosphatase domain signature. 93 101 IPR000222 GO:0043169(InterPro)
Clacu05g0646 429 ProSiteProfiles PPM-type phosphatase domain profile. 57 347 IPR001932 -
Clacu05g0646 429 SUPERFAMILY PP2C-like 45 349 IPR036457 -
Clacu05g0646 429 Gene3D - 43 349 IPR036457 -
Clacu05g0646 429 Pfam Protein phosphatase 2C 79 322 IPR001932 -
Clacu05g0646 429 SMART PP2C_4 49 345 IPR001932 -
Clacu05g0646 429 PANTHER PROTEIN PHOSPHATASE 58 346 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Clacu05g0646 429 FunFam Phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 52 349 - -
Clacu05g0646 429 CDD PP2Cc 73 347 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0646 Clacu-Chr5:5375511 Clacu06g0961 Clacu-Chr6:13174916 2.60E-25 dispersed
Clacu05g2449 Clacu-Chr5:32651776 Clacu05g0646 Clacu-Chr5:5375511 8.10E-11 transposed
Clacu05g0646 Clacu-Chr5:5375511 Clacu06g0555 Clacu-Chr6:6292837 1.10E-156 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0646 - - - 0.0