Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0666 ATGAGAGCGGGGGGAAAGATAGTACAGACTACGGAGAGAGAGAGAGGGAGAGAGACCCGCGTAGCCATCGTTACCATTTTGCGAAACCAAAAACATTTTTACTCCATTTTTTCTTTGCTTTCACTTCTTCCCTTCTCTGCTTCCATTTCCACTCATTTTCCTCTTCCAATTTTCAGCTCAGATCTCTCCAACAAACTCCTCACTCACCCACCCCTTTTCCCTCTCCTCTGTTTGCTCGCGCAAGTTCGAATTCAATCCCCTAATCGCTTCAACTGGAAGTCTATCGTTAATTCAGCGGTTAGAGTCATGACTATGGAGCTTTTCGAAGTTCAACCGGCCGAACTTAAATTCACTTTTGAGTTGAAGAAGCAAAGTTCATGCTTGATACAACTTATCAATAAGTCCGAGCAACATGTTGCTTTCAAGGTAAAAACTACATCTCCCAAGAAGTACTGTGTGCGACCCAATACTGGCATCATTAAGCCCAAGGATACGTGTGACTTTACAGTCACCATGCTAGCTCAGCGTACGGCTCCACCTGATATGCAATGCAAAGACAAATTCCTGGTCCAAGGCACAGTCATCTCCCCTGGAACATCTGAAGAGGACATCACATCTGACGTGTTTGCAAAAGATAGTGGCAAGCACATTGAAGAGAAGAAGCTGAAGGTTTTTCTAGTGAGCGCAACACCACCTCCTGTTTTATTACCAATTAATGGTGAGTTGAAACTAGATTCAAATCATGAAACTTCCATGCCAAGAGATAGAATGCAGACAGGAGTTGAGAACATACCTCCACCTCATAAGGTTGCAGAAGACTCCAATGGACTTGATACCTGCAAACACATAGATGAACTTAGAACAGTTGATACCCCAGAATTGTTATCTCCACCTTATAAGGTGGCTGAGGGAGTTGAGAAAATTGATAGTTGTAAAGATTCAGGTGAGAATAGAGCAGCTGTGGATGTTTCAACAAGACAAAATGAGGATGTGGTGGCCAAACCAAGTGAAAATATTGAAACCACGCCAGCTGAGGGAATTGAGGAATCAAAACTGGCGAAGGATCTACCAGAGTTAAACTTAACTAAAGACTTTCAAGAGCTGAAATCAAAGCTTACTCTCATGGATGCAGAACTACTAGAGGCTGAAGCTACCATAATGAGGCTGAAAAAGGAGAGGATGATAACAACTCAGGAAAGGGAAATGCTCAAGCGTGACTTGGAGACATTGAGAGAAACTGGCCAAAGAAGTATTCAAAAGCAGAACAAATCAATGGGGGTTCCATCACAGAGGGAAACGACGTCGGTTTACGAAGAACCAAATCACGTGCAAGCAATTTCTTTGGCTGGTTTCACGGTTTCTTCTTTCCTCTTTCACTGTTTTTTCTCCTCTTCTTCATGCTATTCGCCCTTCACTTCCGCAGCATTTCTCTCAAATTTCTCTAAATTCGTCTCAGCAGTTGATTCGAATTTCTCCGCTTTCTCGCTGGTTTCATGCGCCTGGATGATTGGAGGAGCTTTCGTGCTGCGGTGTAGAACCTCTTCCTTCCCGTACATAATACATTTGCTTAGTCTCAATGGTAAACCGAGAGAGGAAGTTGGTCACCAGAAATTTGCTTCTGAATTTATCTGCCGAGAACTTCGTGATGCAGATGAAGCAAATTTAATTGATGAGGAAGATATGCACGTTTTTGGTTTGAAGCCTATGGTTGATCCTCTGAACTTGGTTTGCTGCAATATTTGTAAGAAGCCAGTAAAGGCCAGTCAATATATCATTCATTCAGAACTTTGCAGGTCATTAGGTTTTGGACAAGGAACTATAATGGACCTTGATGGTGGGATGGGTCATAGAAAACACTCAAGGAAGGAGAAGAAAAAGTTACTACTTGCTGATGCTAATATATCAGCTGTGGAGAAAGAAGGGTCTGAATCAACATTTGCTGACTATTCTGCTGCACCTGCATTTCCAACTAATAACCAACTTGAAATGGTCAAGTTGACAAAAAGAAATTCAACTTGTACTGTGGCACCTATACTGGATGATGGTACAGGAGTCTGTTCTGGTGTTGTAGACCATGCAGCTAGTCTCATACATCCTTCGACAAAGCGGTCCAAATTGATAACTGGTGAAGGGCTGTTACTGGCATCTGATTTAGAACCATCGTCAGCTAAAACAAAAATTAGAAATGTTCCGATTCCCCTTGCAAGTAAAATATATTACTCTCAGAGAAATAATCGTCTGCGCTCGGCTCTTGGTTATCTTTACTGGGAGGCTGTTGCATCTAGCAAGGAAATTTGTAATATGGTGGATCATCAAATAACAAAGGAAGATATAAAACAATTTCACAATACTTCCCAGGAGGAGTCGTCTCAAGAACAAACAAGTGACATTATTGGAAAGAAGATGGATAGTCAGTCCTTAACCTCTGCATGGAAATCTGACCATAATCTGGCCATATTCTCATCTGGCAAATGTCTGCCTGCCGGTGGTGCCTCAAATAAAGGGCTAGACCTAACTATTTTGAAGGATAGACTAGACAACAGCCAAGTGGAAGTATTCCTGTTGTATAGAAGTCTTGGTGGCACTTTTTTTGTAGGCACAGTGAGGGAGTTGTGGAAATTTAGTGGGGAGTCTGTGCTATTCAAAATGAAGTGGAAAATCTCAGGAGCAGGGCAAGCTTTTAAAAGCGACTTGGCTAGGGCATTACCAGTCTGGTTTACTTGGGGAAATGCAGCTCGCTGCAAAAGGTTTGAGTTTTTGTGA 2763 42.31 MRAGGKIVQTTERERGRETRVAIVTILRNQKHFYSIFSLLSLLPFSASISTHFPLPIFSSDLSNKLLTHPPLFPLLCLLAQVRIQSPNRFNWKSIVNSAVRVMTMELFEVQPAELKFTFELKKQSSCLIQLINKSEQHVAFKVKTTSPKKYCVRPNTGIIKPKDTCDFTVTMLAQRTAPPDMQCKDKFLVQGTVISPGTSEEDITSDVFAKDSGKHIEEKKLKVFLVSATPPPVLLPINGELKLDSNHETSMPRDRMQTGVENIPPPHKVAEDSNGLDTCKHIDELRTVDTPELLSPPYKVAEGVEKIDSCKDSGENRAAVDVSTRQNEDVVAKPSENIETTPAEGIEESKLAKDLPELNLTKDFQELKSKLTLMDAELLEAEATIMRLKKERMITTQEREMLKRDLETLRETGQRSIQKQNKSMGVPSQRETTSVYEEPNHVQAISLAGFTVSSFLFHCFFSSSSCYSPFTSAAFLSNFSKFVSAVDSNFSAFSLVSCAWMIGGAFVLRCRTSSFPYIIHLLSLNGKPREEVGHQKFASEFICRELRDADEANLIDEEDMHVFGLKPMVDPLNLVCCNICKKPVKASQYIIHSELCRSLGFGQGTIMDLDGGMGHRKHSRKEKKKLLLADANISAVEKEGSESTFADYSAAPAFPTNNQLEMVKLTKRNSTCTVAPILDDGTGVCSGVVDHAASLIHPSTKRSKLITGEGLLLASDLEPSSAKTKIRNVPIPLASKIYYSQRNNRLRSALGYLYWEAVASSKEICNMVDHQITKEDIKQFHNTSQEESSQEQTSDIIGKKMDSQSLTSAWKSDHNLAIFSSGKCLPAGGASNKGLDLTILKDRLDNSQVEVFLLYRSLGGTFFVGTVRELWKFSGESVLFKMKWKISGAGQAFKSDLARALPVWFTWGNAARCKRFEFL 920
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5587707 5607157 + ClG42_05g0066600.10 Clacu05g0666 248413

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0666 920 Coils Coil 365 413 - -
Clacu05g0666 920 SUPERFAMILY PapD-like 107 235 IPR008962 -
Clacu05g0666 920 Gene3D Immunoglobulins 102 229 IPR013783 -
Clacu05g0666 920 FunFam Vesicle-associated protein 1-1 102 230 - -
Clacu05g0666 920 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 105 458 IPR016763 GO:0005789(PANTHER)|GO:0005789(InterPro)|GO:0005886(PANTHER)|GO:0061817(PANTHER)|GO:0090158(PANTHER)
Clacu05g0666 920 Pfam MSP (Major sperm protein) domain 109 211 IPR000535 -
Clacu05g0666 920 ProSiteProfiles Major sperm protein (MSP) domain profile. 107 227 IPR000535 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0666 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1690 Clacu-Chr3:30671706 Clacu05g0666 Clacu-Chr5:5587707 5.30E-34 dispersed
Clacu03g1692 Clacu-Chr3:30688039 Clacu05g0666 Clacu-Chr5:5587707 3.70E-41 dispersed
Clacu05g0666 Clacu-Chr5:5587707 Clacu10g0226 Clacu-Chr10:2730858 6.20E-37 dispersed
Clacu05g0666 Clacu-Chr5:5587707 Clacu02g1667 Clacu-Chr2:30093905 3.00E-47 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g366 . . . . . . . . . . Cma06g01462 Cma14g01646 . Car14g01479 Sed12g0869 Cpe08g00217 Cpe03g01390 Bhi01g00933 Tan10g0945 Cmetu06g0148 . . . . . . . . . . . Cone14ag0787 Cone15ag0788 . . Lsi05g01498 . . . . . . . . . . . . Cmo06g01462 Cmo14g01690 . . . . . . . . . . . . . Cla05g00611 Cam05g0671 Cec05g0681 Cco05g0675 Clacu05g0666 Cmu05g0634 Cre05g0704 . Csa03g01410 Chy06g00653 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003314 0 13 1 0 0 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 48